Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3404

Experiment: KB with Mitomycin C 0.625 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Mitomycin C 0.625 ug/ml
4,061,343	+		Psyr_3403	0.28	-1.8
4,061,343	+		Psyr_3403	0.28	-0.1
4,061,343	+		Psyr_3403	0.28	+5.6
4,061,344	-		Psyr_3403	0.28	+1.6
4,061,344	-		Psyr_3403	0.28	+1.4
4,061,348	-		Psyr_3403	0.28	-3.9
4,061,348	-		Psyr_3403	0.28	+3.3
4,061,348	-		Psyr_3403	0.28	-2.5
4,061,454	+		Psyr_3403	0.38	-0.8
4,061,454	+		Psyr_3403	0.38	+2.6
4,061,455	-		Psyr_3403	0.38	-0.3
4,061,455	-		Psyr_3403	0.38	+1.6
4,061,455	-		Psyr_3403	0.38	+0.3
4,062,060	-				-0.4
4,062,104	-				-1.0
4,062,104	-				+4.5
4,062,112	+				-0.3
4,062,112	+				-0.0
4,062,112	+				-0.2
4,062,112	+				-0.0
4,062,112	+				+2.3
4,062,112	+				-0.5
4,062,112	+				-0.1
4,062,112	+				-2.1
4,062,113	-				-0.0
4,062,113	-				+2.6
4,062,113	-				-0.6
4,062,113	-				+3.0
4,062,180	+				+3.7
4,062,374	+				+1.0
4,062,375	-				+1.0
4,062,375	-				+3.9
4,062,375	-				+3.5
4,062,375	-				+0.6
4,062,375	-				+2.0
4,062,870	-		Psyr_3404	0.20	-0.6
4,062,914	+		Psyr_3404	0.22	+3.2
4,062,915	-		Psyr_3404	0.22	+0.4
4,062,953	-		Psyr_3404	0.23	+2.6
4,062,953	-		Psyr_3404	0.23	-0.0
4,063,239	-		Psyr_3404	0.34	+0.4
4,063,275	+		Psyr_3404	0.35	-0.7
4,063,276	-		Psyr_3404	0.35	+2.3
4,063,276	-		Psyr_3404	0.35	+1.6
4,063,276	-		Psyr_3404	0.35	+2.8
4,063,276	-		Psyr_3404	0.35	+0.3
4,063,286	+		Psyr_3404	0.36	-0.7
4,063,287	-		Psyr_3404	0.36	+0.2
4,063,338	-		Psyr_3404	0.37	+1.0
4,063,338	-		Psyr_3404	0.37	-2.6
4,063,415	-		Psyr_3404	0.40	+0.7
4,063,415	-		Psyr_3404	0.40	-3.0
4,063,461	+		Psyr_3404	0.42	+1.6
4,063,462	-		Psyr_3404	0.42	+1.6
4,063,462	-		Psyr_3404	0.42	-0.2
4,063,462	-		Psyr_3404	0.42	-1.2
4,063,607	+		Psyr_3404	0.47	+2.3
4,063,613	+		Psyr_3404	0.47	-0.0
4,063,613	+		Psyr_3404	0.47	+2.0
4,063,613	+		Psyr_3404	0.47	+3.7
4,063,613	+		Psyr_3404	0.47	-3.7
4,063,613	+		Psyr_3404	0.47	-1.7
4,063,613	+		Psyr_3404	0.47	-2.4
4,063,613	+		Psyr_3404	0.47	-3.0
4,063,613	+		Psyr_3404	0.47	-4.1
4,063,614	-		Psyr_3404	0.47	+2.3
4,063,614	-		Psyr_3404	0.47	+3.2
4,063,614	-		Psyr_3404	0.47	+3.0
4,063,614	-		Psyr_3404	0.47	-1.9
4,063,614	-		Psyr_3404	0.47	-4.0
4,063,614	-		Psyr_3404	0.47	+2.6
4,063,628	+		Psyr_3404	0.48	-0.9
4,063,628	+		Psyr_3404	0.48	-4.5
4,063,628	+		Psyr_3404	0.48	+3.7
4,063,629	-		Psyr_3404	0.48	+3.9
4,063,629	-		Psyr_3404	0.48	+1.0
4,063,629	-		Psyr_3404	0.48	+4.3
4,063,629	-		Psyr_3404	0.48	+2.6
4,063,806	-		Psyr_3404	0.54	-1.6
4,063,806	-		Psyr_3404	0.54	-2.0
4,063,808	+		Psyr_3404	0.55	+1.0
4,063,808	+		Psyr_3404	0.55	+0.5
4,063,808	+		Psyr_3404	0.55	-2.4
4,063,809	-		Psyr_3404	0.55	+2.3
4,063,809	-		Psyr_3404	0.55	-0.3
4,063,809	-		Psyr_3404	0.55	+1.0
4,063,809	-		Psyr_3404	0.55	-4.5
4,063,973	-		Psyr_3404	0.61	-3.7
4,063,973	-		Psyr_3404	0.61	-1.9
4,063,973	-		Psyr_3404	0.61	+1.8
4,064,034	+		Psyr_3404	0.63	-0.9
4,064,035	-		Psyr_3404	0.63	-2.5
4,064,042	+		Psyr_3404	0.63	-2.0
4,064,043	-		Psyr_3404	0.63	-0.9
4,064,129	-		Psyr_3404	0.66	-2.3
4,064,261	+		Psyr_3404	0.71	+3.9
4,064,261	+		Psyr_3404	0.71	+3.7
4,064,261	+		Psyr_3404	0.71	+2.3
4,064,261	+		Psyr_3404	0.71	-0.0
4,064,261	+		Psyr_3404	0.71	-3.4
4,064,262	-		Psyr_3404	0.71	+2.3
4,064,262	-		Psyr_3404	0.71	-0.8
4,064,262	-		Psyr_3404	0.71	+0.3
4,064,262	-		Psyr_3404	0.71	-1.5
4,064,262	-		Psyr_3404	0.71	+2.0
4,064,285	+		Psyr_3404	0.72	+3.5
4,064,285	+		Psyr_3404	0.72	+3.7
4,064,285	+		Psyr_3404	0.72	-0.0
4,064,285	+		Psyr_3404	0.72	-1.8
4,064,286	-		Psyr_3404	0.72	-1.4
4,064,286	-		Psyr_3404	0.72	-0.8
4,064,416	+		Psyr_3404	0.77	-0.7
4,064,417	-		Psyr_3404	0.77	+0.3
4,064,417	-		Psyr_3404	0.77	-3.3
4,064,468	+		Psyr_3404	0.79	+4.2
4,064,622	-		Psyr_3404	0.84	-1.2
4,064,722	+		Psyr_3404	0.88	+1.8
4,064,999	+				+3.0
4,064,999	+				+2.0
4,065,000	-				-2.6
4,065,000	-				-0.6
4,065,000	-				+1.2
4,065,026	+				-1.3
4,065,026	+				+1.3
4,065,027	-				-0.0
4,065,027	-				+3.9
4,065,114	+				+2.3
4,065,115	-				-1.0
4,065,116	+				-4.0
4,065,116	+				-0.0
4,065,117	-				+0.8
4,065,175	+				-1.0
4,065,175	+				-2.8
4,065,175	+				-0.0
4,065,175	+				-2.2
4,065,175	+				-2.6
4,065,176	-				-0.5
4,065,176	-				-0.9
4,065,176	-				-0.0
4,065,176	-				-1.8
4,065,176	-				+4.2
4,065,176	-				-0.5
4,065,176	-				+3.3
4,065,176	-				-1.3
4,065,176	-				-0.0
4,065,176	-				+4.5
4,065,321	+		Psyr_3405	0.18	-3.0
4,065,321	+		Psyr_3405	0.18	+3.2
4,065,321	+		Psyr_3405	0.18	+1.2
4,065,322	-		Psyr_3405	0.18	-2.9
4,065,613	+		Psyr_3405	0.54	-3.8
4,065,613	+		Psyr_3405	0.54	-3.8
4,065,614	-		Psyr_3405	0.54	+1.6
4,065,614	-		Psyr_3405	0.54	-0.0
4,065,658	+		Psyr_3405	0.60	-2.0
4,065,718	-		Psyr_3405	0.67	+2.3
4,065,759	+		Psyr_3405	0.73	+2.8
4,065,759	+		Psyr_3405	0.73	-1.2
4,065,759	+		Psyr_3405	0.73	+0.1
4,065,759	+		Psyr_3405	0.73	+2.8
4,066,039	+				-4.1
4,066,039	+				+3.3