Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3394 and Psyr_3395 overlap by 1 nucleotides Psyr_3395 and Psyr_3396 are separated by 21 nucleotides Psyr_3396 and Psyr_3397 are separated by 110 nucleotides
Psyr_3394: Psyr_3394 - conserved hypothetical protein, at 4,051,598 to 4,053,223
_3394
Psyr_3395: Psyr_3395 - FlhB domain protein, at 4,053,223 to 4,053,546
_3395
Psyr_3396: Psyr_3396 - DNA replication and repair protein RecR, at 4,053,568 to 4,054,170
_3396
Psyr_3397: Psyr_3397 - transcriptional regulator, LysR family, at 4,054,281 to 4,055,165
_3397
Position (kb) 4053
4054
4055 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 4053.024 kb on + strand, within Psyr_3394 at 4053.024 kb on + strand, within Psyr_3394 at 4053.024 kb on + strand, within Psyr_3394 at 4053.025 kb on - strand, within Psyr_3394 at 4053.052 kb on - strand, within Psyr_3394 at 4053.052 kb on - strand, within Psyr_3394 at 4053.101 kb on + strand at 4053.268 kb on + strand, within Psyr_3395 at 4053.268 kb on + strand, within Psyr_3395 at 4053.269 kb on - strand, within Psyr_3395 at 4053.269 kb on - strand, within Psyr_3395 at 4053.364 kb on + strand, within Psyr_3395 at 4053.407 kb on + strand, within Psyr_3395 at 4053.417 kb on + strand, within Psyr_3395 at 4053.417 kb on + strand, within Psyr_3395 at 4053.541 kb on + strand at 4053.707 kb on + strand, within Psyr_3396 at 4053.707 kb on + strand, within Psyr_3396 at 4053.707 kb on + strand, within Psyr_3396 at 4053.707 kb on + strand, within Psyr_3396 at 4053.707 kb on + strand, within Psyr_3396 at 4053.707 kb on + strand, within Psyr_3396 at 4053.707 kb on + strand, within Psyr_3396 at 4053.708 kb on - strand, within Psyr_3396 at 4053.708 kb on - strand, within Psyr_3396 at 4053.708 kb on - strand, within Psyr_3396 at 4053.863 kb on + strand, within Psyr_3396 at 4053.864 kb on - strand, within Psyr_3396 at 4053.897 kb on - strand, within Psyr_3396 at 4053.897 kb on - strand, within Psyr_3396 at 4054.234 kb on + strand at 4054.234 kb on + strand at 4054.234 kb on + strand at 4054.234 kb on + strand at 4054.235 kb on - strand at 4054.235 kb on - strand at 4054.505 kb on + strand, within Psyr_3397 at 4054.656 kb on - strand, within Psyr_3397 at 4054.657 kb on + strand, within Psyr_3397 at 4054.657 kb on + strand, within Psyr_3397 at 4054.658 kb on - strand, within Psyr_3397 at 4054.658 kb on - strand, within Psyr_3397 at 4054.658 kb on - strand, within Psyr_3397 at 4054.658 kb on - strand, within Psyr_3397 at 4054.658 kb on - strand, within Psyr_3397 at 4054.658 kb on - strand, within Psyr_3397
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 4,053,024 + Psyr_3394 0.88 +4.1 4,053,024 + Psyr_3394 0.88 +3.3 4,053,024 + Psyr_3394 0.88 -1.4 4,053,025 - Psyr_3394 0.88 +1.0 4,053,052 - Psyr_3394 0.89 +3.2 4,053,052 - Psyr_3394 0.89 +1.6 4,053,101 + -3.4 4,053,268 + Psyr_3395 0.14 -1.4 4,053,268 + Psyr_3395 0.14 +2.3 4,053,269 - Psyr_3395 0.14 -0.0 4,053,269 - Psyr_3395 0.14 +1.0 4,053,364 + Psyr_3395 0.44 -0.0 4,053,407 + Psyr_3395 0.57 -2.4 4,053,417 + Psyr_3395 0.60 +1.0 4,053,417 + Psyr_3395 0.60 -1.7 4,053,541 + +2.6 4,053,707 + Psyr_3396 0.23 -3.1 4,053,707 + Psyr_3396 0.23 -2.2 4,053,707 + Psyr_3396 0.23 +1.6 4,053,707 + Psyr_3396 0.23 -1.0 4,053,707 + Psyr_3396 0.23 -2.6 4,053,707 + Psyr_3396 0.23 -2.5 4,053,707 + Psyr_3396 0.23 +2.0 4,053,708 - Psyr_3396 0.23 -1.6 4,053,708 - Psyr_3396 0.23 -0.0 4,053,708 - Psyr_3396 0.23 +1.6 4,053,863 + Psyr_3396 0.49 -4.9 4,053,864 - Psyr_3396 0.49 -3.3 4,053,897 - Psyr_3396 0.55 -2.1 4,053,897 - Psyr_3396 0.55 -4.0 4,054,234 + +1.0 4,054,234 + +1.6 4,054,234 + -2.6 4,054,234 + +1.6 4,054,235 - +2.8 4,054,235 - -0.6 4,054,505 + Psyr_3397 0.25 -0.0 4,054,656 - Psyr_3397 0.42 +2.0 4,054,657 + Psyr_3397 0.42 +1.0 4,054,657 + Psyr_3397 0.42 +2.0 4,054,658 - Psyr_3397 0.43 +0.4 4,054,658 - Psyr_3397 0.43 -2.9 4,054,658 - Psyr_3397 0.43 -1.2 4,054,658 - Psyr_3397 0.43 +3.7 4,054,658 - Psyr_3397 0.43 +2.6 4,054,658 - Psyr_3397 0.43 +1.6
Or see this region's nucleotide sequence