Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3383

Experiment: KB with Mitomycin C 0.625 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3382 and Psyr_3383 are separated by 76 nucleotidesPsyr_3383 and Psyr_3384 are separated by 59 nucleotidesPsyr_3384 and Psyr_3385 are separated by 11 nucleotides Psyr_3382: Psyr_3382 - Ion transport protein, at 4,042,017 to 4,042,850 _3382 Psyr_3383: Psyr_3383 - extracellular solute-binding protein, family 1, at 4,042,927 to 4,043,952 _3383 Psyr_3384: Psyr_3384 - lipoprotein, putative, at 4,044,012 to 4,044,419 _3384 Psyr_3385: Psyr_3385 - TPR repeat protein, at 4,044,431 to 4,045,624 _3385 Position (kb) 4042 4043 4044Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4 5at 4041.984 kb on + strandat 4041.985 kb on - strandat 4042.052 kb on + strandat 4042.053 kb on - strandat 4042.058 kb on + strandat 4042.059 kb on - strandat 4042.073 kb on + strandat 4042.073 kb on + strandat 4042.139 kb on + strand, within Psyr_3382at 4042.139 kb on + strand, within Psyr_3382at 4042.140 kb on - strand, within Psyr_3382at 4042.160 kb on + strand, within Psyr_3382at 4042.161 kb on - strand, within Psyr_3382at 4042.161 kb on - strand, within Psyr_3382at 4042.161 kb on - strand, within Psyr_3382at 4042.230 kb on + strand, within Psyr_3382at 4042.230 kb on + strand, within Psyr_3382at 4042.230 kb on + strand, within Psyr_3382at 4042.230 kb on + strand, within Psyr_3382at 4042.231 kb on - strand, within Psyr_3382at 4042.231 kb on - strand, within Psyr_3382at 4042.231 kb on - strand, within Psyr_3382at 4042.231 kb on - strand, within Psyr_3382at 4042.231 kb on - strand, within Psyr_3382at 4042.231 kb on - strand, within Psyr_3382at 4042.231 kb on - strand, within Psyr_3382at 4042.246 kb on - strand, within Psyr_3382at 4042.269 kb on + strand, within Psyr_3382at 4042.269 kb on + strand, within Psyr_3382at 4042.333 kb on - strand, within Psyr_3382at 4042.333 kb on - strand, within Psyr_3382at 4042.333 kb on - strand, within Psyr_3382at 4042.333 kb on - strand, within Psyr_3382at 4042.333 kb on - strand, within Psyr_3382at 4042.333 kb on - strand, within Psyr_3382at 4042.335 kb on + strand, within Psyr_3382at 4042.336 kb on - strand, within Psyr_3382at 4042.351 kb on - strand, within Psyr_3382at 4042.376 kb on + strand, within Psyr_3382at 4042.376 kb on + strand, within Psyr_3382at 4042.414 kb on - strand, within Psyr_3382at 4042.414 kb on - strand, within Psyr_3382at 4042.414 kb on - strand, within Psyr_3382at 4042.431 kb on + strand, within Psyr_3382at 4042.431 kb on + strand, within Psyr_3382at 4042.431 kb on + strand, within Psyr_3382at 4042.431 kb on + strand, within Psyr_3382at 4042.431 kb on + strand, within Psyr_3382at 4042.432 kb on - strand, within Psyr_3382at 4042.432 kb on - strand, within Psyr_3382at 4042.524 kb on + strand, within Psyr_3382at 4042.524 kb on + strand, within Psyr_3382at 4042.524 kb on + strand, within Psyr_3382at 4042.524 kb on + strand, within Psyr_3382at 4042.524 kb on + strand, within Psyr_3382at 4042.524 kb on + strand, within Psyr_3382at 4042.524 kb on + strand, within Psyr_3382at 4042.524 kb on + strand, within Psyr_3382at 4042.524 kb on + strand, within Psyr_3382at 4042.524 kb on + strand, within Psyr_3382at 4042.524 kb on + strand, within Psyr_3382at 4042.524 kb on + strand, within Psyr_3382at 4042.524 kb on + strand, within Psyr_3382at 4042.524 kb on + strand, within Psyr_3382at 4042.524 kb on + strand, within Psyr_3382at 4042.524 kb on + strand, within Psyr_3382at 4042.524 kb on + strand, within Psyr_3382at 4042.524 kb on + strand, within Psyr_3382at 4042.525 kb on - strand, within Psyr_3382at 4042.525 kb on - strand, within Psyr_3382at 4042.525 kb on - strand, within Psyr_3382at 4042.525 kb on - strand, within Psyr_3382at 4042.525 kb on - strand, within Psyr_3382at 4042.525 kb on - strand, within Psyr_3382at 4042.525 kb on - strand, within Psyr_3382at 4042.525 kb on - strand, within Psyr_3382at 4042.525 kb on - strand, within Psyr_3382at 4042.525 kb on - strand, within Psyr_3382at 4042.575 kb on + strand, within Psyr_3382at 4042.575 kb on + strand, within Psyr_3382at 4042.618 kb on + strand, within Psyr_3382at 4042.618 kb on + strand, within Psyr_3382at 4042.619 kb on - strand, within Psyr_3382at 4042.619 kb on - strand, within Psyr_3382at 4042.619 kb on - strand, within Psyr_3382at 4042.619 kb on - strand, within Psyr_3382at 4042.619 kb on - strand, within Psyr_3382at 4042.959 kb on + strandat 4043.044 kb on + strand, within Psyr_3383at 4043.045 kb on - strand, within Psyr_3383at 4043.065 kb on + strand, within Psyr_3383at 4043.065 kb on + strand, within Psyr_3383at 4043.066 kb on - strand, within Psyr_3383at 4043.074 kb on + strand, within Psyr_3383at 4043.075 kb on - strand, within Psyr_3383at 4043.428 kb on + strand, within Psyr_3383at 4043.429 kb on - strand, within Psyr_3383at 4043.550 kb on + strand, within Psyr_3383at 4043.550 kb on + strand, within Psyr_3383at 4043.551 kb on - strand, within Psyr_3383at 4043.551 kb on - strand, within Psyr_3383at 4043.740 kb on + strand, within Psyr_3383at 4043.740 kb on + strand, within Psyr_3383at 4043.740 kb on + strand, within Psyr_3383at 4043.749 kb on + strand, within Psyr_3383at 4043.750 kb on - strand, within Psyr_3383at 4043.750 kb on - strand, within Psyr_3383at 4043.750 kb on - strand, within Psyr_3383at 4043.827 kb on + strand, within Psyr_3383at 4043.827 kb on + strand, within Psyr_3383at 4043.828 kb on - strand, within Psyr_3383at 4043.828 kb on - strand, within Psyr_3383at 4043.828 kb on - strand, within Psyr_3383at 4043.828 kb on - strand, within Psyr_3383at 4043.828 kb on - strand, within Psyr_3383at 4043.828 kb on - strand, within Psyr_3383at 4043.828 kb on - strand, within Psyr_3383at 4043.828 kb on - strand, within Psyr_3383at 4043.828 kb on - strand, within Psyr_3383at 4043.829 kb on + strand, within Psyr_3383at 4043.829 kb on + strand, within Psyr_3383at 4043.938 kb on + strandat 4043.938 kb on + strandat 4043.950 kb on + strandat 4043.951 kb on - strandat 4043.951 kb on - strandat 4043.951 kb on - strandat 4043.999 kb on - strandat 4044.017 kb on + strandat 4044.018 kb on - strandat 4044.118 kb on + strand, within Psyr_3384at 4044.119 kb on - strand, within Psyr_3384at 4044.121 kb on + strand, within Psyr_3384at 4044.121 kb on + strand, within Psyr_3384at 4044.121 kb on + strand, within Psyr_3384at 4044.121 kb on + strand, within Psyr_3384at 4044.121 kb on + strand, within Psyr_3384at 4044.121 kb on + strand, within Psyr_3384at 4044.121 kb on + strand, within Psyr_3384at 4044.122 kb on - strand, within Psyr_3384at 4044.122 kb on - strand, within Psyr_3384at 4044.122 kb on - strand, within Psyr_3384at 4044.122 kb on - strand, within Psyr_3384at 4044.136 kb on + strand, within Psyr_3384at 4044.137 kb on - strand, within Psyr_3384at 4044.166 kb on + strand, within Psyr_3384at 4044.167 kb on - strand, within Psyr_3384at 4044.167 kb on - strand, within Psyr_3384at 4044.275 kb on + strand, within Psyr_3384at 4044.276 kb on - strand, within Psyr_3384at 4044.336 kb on - strand, within Psyr_3384at 4044.336 kb on - strand, within Psyr_3384at 4044.415 kb on + strandat 4044.419 kb on + strandat 4044.419 kb on + strandat 4044.419 kb on + strandat 4044.419 kb on + strandat 4044.419 kb on + strandat 4044.420 kb on - strandat 4044.420 kb on - strandat 4044.420 kb on - strandat 4044.432 kb on + strandat 4044.433 kb on - strandat 4044.433 kb on - strandat 4044.476 kb on - strandat 4044.476 kb on - strandat 4044.719 kb on + strand, within Psyr_3385at 4044.775 kb on + strand, within Psyr_3385

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
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4,041,984 + -0.2
4,041,985 - +0.1
4,042,052 + -1.8
4,042,053 - -0.6
4,042,058 + -4.6
4,042,059 - -2.1
4,042,073 + -1.3
4,042,073 + +0.6
4,042,139 + Psyr_3382 0.15 +2.0
4,042,139 + Psyr_3382 0.15 -0.0
4,042,140 - Psyr_3382 0.15 -1.8
4,042,160 + Psyr_3382 0.17 -1.1
4,042,161 - Psyr_3382 0.17 -1.6
4,042,161 - Psyr_3382 0.17 +1.0
4,042,161 - Psyr_3382 0.17 +2.3
4,042,230 + Psyr_3382 0.26 +3.3
4,042,230 + Psyr_3382 0.26 +1.4
4,042,230 + Psyr_3382 0.26 +2.6
4,042,230 + Psyr_3382 0.26 -0.4
4,042,231 - Psyr_3382 0.26 +1.0
4,042,231 - Psyr_3382 0.26 -3.1
4,042,231 - Psyr_3382 0.26 -3.9
4,042,231 - Psyr_3382 0.26 -3.6
4,042,231 - Psyr_3382 0.26 +3.2
4,042,231 - Psyr_3382 0.26 +2.3
4,042,231 - Psyr_3382 0.26 -0.0
4,042,246 - Psyr_3382 0.27 -2.0
4,042,269 + Psyr_3382 0.30 +2.8
4,042,269 + Psyr_3382 0.30 -0.0
4,042,333 - Psyr_3382 0.38 -3.7
4,042,333 - Psyr_3382 0.38 -0.0
4,042,333 - Psyr_3382 0.38 -0.0
4,042,333 - Psyr_3382 0.38 -2.2
4,042,333 - Psyr_3382 0.38 -0.8
4,042,333 - Psyr_3382 0.38 +1.0
4,042,335 + Psyr_3382 0.38 +1.6
4,042,336 - Psyr_3382 0.38 -1.9
4,042,351 - Psyr_3382 0.40 -0.4
4,042,376 + Psyr_3382 0.43 +3.4
4,042,376 + Psyr_3382 0.43 -0.0
4,042,414 - Psyr_3382 0.48 -2.8
4,042,414 - Psyr_3382 0.48 -0.0
4,042,414 - Psyr_3382 0.48 +3.4
4,042,431 + Psyr_3382 0.50 +3.2
4,042,431 + Psyr_3382 0.50 -0.0
4,042,431 + Psyr_3382 0.50 +0.4
4,042,431 + Psyr_3382 0.50 -3.1
4,042,431 + Psyr_3382 0.50 -0.0
4,042,432 - Psyr_3382 0.50 +4.2
4,042,432 - Psyr_3382 0.50 +3.7
4,042,524 + Psyr_3382 0.61 -0.6
4,042,524 + Psyr_3382 0.61 -0.4
4,042,524 + Psyr_3382 0.61 -0.0
4,042,524 + Psyr_3382 0.61 -1.7
4,042,524 + Psyr_3382 0.61 -1.4
4,042,524 + Psyr_3382 0.61 -2.1
4,042,524 + Psyr_3382 0.61 -2.3
4,042,524 + Psyr_3382 0.61 -2.1
4,042,524 + Psyr_3382 0.61 +1.0
4,042,524 + Psyr_3382 0.61 +1.6
4,042,524 + Psyr_3382 0.61 -0.0
4,042,524 + Psyr_3382 0.61 -1.1
4,042,524 + Psyr_3382 0.61 -3.3
4,042,524 + Psyr_3382 0.61 -0.0
4,042,524 + Psyr_3382 0.61 +3.8
4,042,524 + Psyr_3382 0.61 -4.1
4,042,524 + Psyr_3382 0.61 +3.0
4,042,524 + Psyr_3382 0.61 -1.0
4,042,525 - Psyr_3382 0.61 -1.2
4,042,525 - Psyr_3382 0.61 +2.6
4,042,525 - Psyr_3382 0.61 -0.0
4,042,525 - Psyr_3382 0.61 +3.3
4,042,525 - Psyr_3382 0.61 +2.0
4,042,525 - Psyr_3382 0.61 -2.3
4,042,525 - Psyr_3382 0.61 -0.0
4,042,525 - Psyr_3382 0.61 +1.6
4,042,525 - Psyr_3382 0.61 +3.0
4,042,525 - Psyr_3382 0.61 -0.0
4,042,575 + Psyr_3382 0.67 -0.0
4,042,575 + Psyr_3382 0.67 -0.1
4,042,618 + Psyr_3382 0.72 -3.9
4,042,618 + Psyr_3382 0.72 +3.7
4,042,619 - Psyr_3382 0.72 -2.2
4,042,619 - Psyr_3382 0.72 -3.5
4,042,619 - Psyr_3382 0.72 +2.6
4,042,619 - Psyr_3382 0.72 -0.0
4,042,619 - Psyr_3382 0.72 +2.3
4,042,959 + +1.0
4,043,044 + Psyr_3383 0.11 -3.1
4,043,045 - Psyr_3383 0.12 +0.2
4,043,065 + Psyr_3383 0.13 +2.8
4,043,065 + Psyr_3383 0.13 -1.6
4,043,066 - Psyr_3383 0.14 +3.8
4,043,074 + Psyr_3383 0.14 +3.1
4,043,075 - Psyr_3383 0.14 -3.7
4,043,428 + Psyr_3383 0.49 +2.0
4,043,429 - Psyr_3383 0.49 -1.2
4,043,550 + Psyr_3383 0.61 -1.6
4,043,550 + Psyr_3383 0.61 +3.7
4,043,551 - Psyr_3383 0.61 +3.4
4,043,551 - Psyr_3383 0.61 +3.9
4,043,740 + Psyr_3383 0.79 -1.4
4,043,740 + Psyr_3383 0.79 -1.3
4,043,740 + Psyr_3383 0.79 -0.9
4,043,749 + Psyr_3383 0.80 +3.4
4,043,750 - Psyr_3383 0.80 -2.8
4,043,750 - Psyr_3383 0.80 -2.3
4,043,750 - Psyr_3383 0.80 -2.1
4,043,827 + Psyr_3383 0.88 -2.0
4,043,827 + Psyr_3383 0.88 -2.5
4,043,828 - Psyr_3383 0.88 -0.0
4,043,828 - Psyr_3383 0.88 -1.9
4,043,828 - Psyr_3383 0.88 -0.0
4,043,828 - Psyr_3383 0.88 -1.0
4,043,828 - Psyr_3383 0.88 -3.7
4,043,828 - Psyr_3383 0.88 +2.6
4,043,828 - Psyr_3383 0.88 +2.6
4,043,828 - Psyr_3383 0.88 -0.0
4,043,828 - Psyr_3383 0.88 -3.7
4,043,829 + Psyr_3383 0.88 -1.3
4,043,829 + Psyr_3383 0.88 -1.3
4,043,938 + +4.6
4,043,938 + +4.4
4,043,950 + -2.6
4,043,951 - -0.0
4,043,951 - -4.9
4,043,951 - +1.0
4,043,999 - -2.2
4,044,017 + +1.6
4,044,018 - -1.0
4,044,118 + Psyr_3384 0.26 +2.0
4,044,119 - Psyr_3384 0.26 -0.8
4,044,121 + Psyr_3384 0.27 -1.0
4,044,121 + Psyr_3384 0.27 -0.0
4,044,121 + Psyr_3384 0.27 +1.6
4,044,121 + Psyr_3384 0.27 +0.4
4,044,121 + Psyr_3384 0.27 -0.3
4,044,121 + Psyr_3384 0.27 +2.6
4,044,121 + Psyr_3384 0.27 -0.0
4,044,122 - Psyr_3384 0.27 +4.0
4,044,122 - Psyr_3384 0.27 -1.1
4,044,122 - Psyr_3384 0.27 +2.2
4,044,122 - Psyr_3384 0.27 +4.8
4,044,136 + Psyr_3384 0.30 +1.6
4,044,137 - Psyr_3384 0.31 +4.0
4,044,166 + Psyr_3384 0.38 -1.2
4,044,167 - Psyr_3384 0.38 -0.0
4,044,167 - Psyr_3384 0.38 +5.2
4,044,275 + Psyr_3384 0.64 +3.8
4,044,276 - Psyr_3384 0.65 +2.6
4,044,336 - Psyr_3384 0.79 -0.0
4,044,336 - Psyr_3384 0.79 +0.1
4,044,415 + -2.6
4,044,419 + -1.0
4,044,419 + -2.3
4,044,419 + -4.5
4,044,419 + -2.0
4,044,419 + -0.8
4,044,420 - +4.1
4,044,420 - +3.7
4,044,420 - +2.3
4,044,432 + +3.0
4,044,433 - +3.2
4,044,433 - +3.2
4,044,476 - -2.2
4,044,476 - -0.3
4,044,719 + Psyr_3385 0.24 +1.6
4,044,775 + Psyr_3385 0.29 -2.2

Or see this region's nucleotide sequence