Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3378

Experiment: KB with Mitomycin C 0.625 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3376 and Psyr_3377 are separated by 539 nucleotidesPsyr_3377 and Psyr_3378 overlap by 4 nucleotidesPsyr_3378 and Psyr_3379 overlap by 4 nucleotidesPsyr_3379 and Psyr_3380 overlap by 4 nucleotides Psyr_3376: Psyr_3376 - lyase, putative, at 4,035,018 to 4,035,686 _3376 Psyr_3377: Psyr_3377 - transcriptional regulator, MarR family, at 4,036,226 to 4,036,678 _3377 Psyr_3378: Psyr_3378 - Fusaric acid resistance protein conserved region, at 4,036,675 to 4,038,762 _3378 Psyr_3379: Psyr_3379 - membrane protein, putative, at 4,038,759 to 4,038,968 _3379 Psyr_3380: Psyr_3380 - Secretion protein HlyD, at 4,038,965 to 4,039,849 _3380 Position (kb) 4036 4037 4038 4039Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4 5at 4035.952 kb on + strandat 4035.952 kb on + strandat 4035.953 kb on - strandat 4035.953 kb on - strandat 4036.006 kb on + strandat 4036.018 kb on - strandat 4036.061 kb on - strandat 4036.140 kb on + strandat 4036.140 kb on + strandat 4036.204 kb on - strandat 4036.319 kb on + strand, within Psyr_3377at 4036.319 kb on + strand, within Psyr_3377at 4036.319 kb on + strand, within Psyr_3377at 4036.320 kb on - strand, within Psyr_3377at 4036.320 kb on - strand, within Psyr_3377at 4036.629 kb on + strand, within Psyr_3377at 4036.720 kb on + strandat 4036.721 kb on - strandat 4036.759 kb on + strandat 4036.759 kb on + strandat 4036.759 kb on + strandat 4036.759 kb on + strandat 4036.759 kb on + strandat 4036.759 kb on + strandat 4036.760 kb on - strandat 4036.760 kb on - strandat 4036.760 kb on - strandat 4036.760 kb on - strandat 4036.813 kb on + strandat 4036.813 kb on + strandat 4036.813 kb on + strandat 4036.814 kb on - strandat 4036.814 kb on - strandat 4036.814 kb on - strandat 4037.011 kb on + strand, within Psyr_3378at 4037.011 kb on + strand, within Psyr_3378at 4037.033 kb on - strand, within Psyr_3378at 4037.224 kb on + strand, within Psyr_3378at 4037.224 kb on + strand, within Psyr_3378at 4037.225 kb on - strand, within Psyr_3378at 4037.225 kb on - strand, within Psyr_3378at 4037.238 kb on + strand, within Psyr_3378at 4037.782 kb on + strand, within Psyr_3378at 4037.801 kb on + strand, within Psyr_3378at 4037.802 kb on - strand, within Psyr_3378at 4037.929 kb on + strand, within Psyr_3378at 4037.930 kb on - strand, within Psyr_3378at 4037.977 kb on + strand, within Psyr_3378at 4037.978 kb on - strand, within Psyr_3378at 4037.978 kb on - strand, within Psyr_3378at 4038.520 kb on + strand, within Psyr_3378at 4038.738 kb on + strandat 4038.873 kb on + strand, within Psyr_3379at 4038.907 kb on + strand, within Psyr_3379at 4038.907 kb on + strand, within Psyr_3379at 4038.907 kb on + strand, within Psyr_3379at 4038.907 kb on + strand, within Psyr_3379at 4038.907 kb on + strand, within Psyr_3379at 4038.907 kb on + strand, within Psyr_3379at 4038.907 kb on + strand, within Psyr_3379at 4038.908 kb on - strand, within Psyr_3379at 4038.908 kb on - strand, within Psyr_3379at 4038.908 kb on - strand, within Psyr_3379at 4038.913 kb on + strand, within Psyr_3379at 4038.913 kb on + strand, within Psyr_3379at 4038.913 kb on + strand, within Psyr_3379at 4038.913 kb on + strand, within Psyr_3379at 4038.913 kb on + strand, within Psyr_3379at 4038.913 kb on + strand, within Psyr_3379at 4038.914 kb on - strand, within Psyr_3379at 4038.914 kb on - strand, within Psyr_3379at 4038.915 kb on + strand, within Psyr_3379at 4038.915 kb on + strand, within Psyr_3379at 4038.916 kb on - strand, within Psyr_3379at 4038.916 kb on - strand, within Psyr_3379at 4038.916 kb on - strand, within Psyr_3379at 4038.916 kb on - strand, within Psyr_3379at 4038.946 kb on + strand, within Psyr_3379at 4038.946 kb on + strand, within Psyr_3379at 4038.947 kb on - strand, within Psyr_3379at 4038.947 kb on - strand, within Psyr_3379at 4038.947 kb on - strand, within Psyr_3379at 4038.947 kb on - strand, within Psyr_3379at 4039.039 kb on - strandat 4039.039 kb on - strandat 4039.055 kb on + strand, within Psyr_3380at 4039.055 kb on + strand, within Psyr_3380at 4039.055 kb on + strand, within Psyr_3380at 4039.055 kb on + strand, within Psyr_3380at 4039.055 kb on + strand, within Psyr_3380at 4039.055 kb on + strand, within Psyr_3380at 4039.055 kb on + strand, within Psyr_3380at 4039.055 kb on + strand, within Psyr_3380at 4039.056 kb on - strand, within Psyr_3380at 4039.056 kb on - strand, within Psyr_3380at 4039.056 kb on - strand, within Psyr_3380at 4039.056 kb on - strand, within Psyr_3380at 4039.056 kb on - strand, within Psyr_3380at 4039.056 kb on - strand, within Psyr_3380at 4039.056 kb on - strand, within Psyr_3380at 4039.056 kb on - strand, within Psyr_3380at 4039.056 kb on - strand, within Psyr_3380at 4039.056 kb on - strand, within Psyr_3380at 4039.056 kb on - strand, within Psyr_3380at 4039.058 kb on + strand, within Psyr_3380at 4039.058 kb on + strand, within Psyr_3380at 4039.058 kb on + strand, within Psyr_3380at 4039.058 kb on + strand, within Psyr_3380at 4039.058 kb on + strand, within Psyr_3380at 4039.058 kb on + strand, within Psyr_3380at 4039.058 kb on + strand, within Psyr_3380at 4039.058 kb on + strand, within Psyr_3380at 4039.058 kb on + strand, within Psyr_3380at 4039.058 kb on + strand, within Psyr_3380at 4039.058 kb on + strand, within Psyr_3380at 4039.058 kb on + strandat 4039.058 kb on + strand, within Psyr_3380at 4039.059 kb on - strand, within Psyr_3380at 4039.059 kb on - strand, within Psyr_3380at 4039.059 kb on - strand, within Psyr_3380at 4039.059 kb on - strand, within Psyr_3380at 4039.059 kb on - strand, within Psyr_3380at 4039.059 kb on - strand, within Psyr_3380at 4039.059 kb on - strand, within Psyr_3380at 4039.059 kb on - strand, within Psyr_3380at 4039.059 kb on - strand, within Psyr_3380at 4039.059 kb on - strandat 4039.059 kb on - strand, within Psyr_3380at 4039.059 kb on - strand, within Psyr_3380at 4039.059 kb on - strand, within Psyr_3380at 4039.059 kb on - strand, within Psyr_3380at 4039.059 kb on - strand, within Psyr_3380at 4039.059 kb on - strand, within Psyr_3380at 4039.059 kb on - strand, within Psyr_3380at 4039.059 kb on - strand, within Psyr_3380at 4039.064 kb on + strand, within Psyr_3380at 4039.064 kb on + strand, within Psyr_3380at 4039.064 kb on + strand, within Psyr_3380at 4039.064 kb on + strand, within Psyr_3380at 4039.064 kb on + strand, within Psyr_3380at 4039.064 kb on + strand, within Psyr_3380at 4039.064 kb on + strand, within Psyr_3380at 4039.064 kb on + strand, within Psyr_3380at 4039.064 kb on + strand, within Psyr_3380at 4039.064 kb on + strand, within Psyr_3380at 4039.064 kb on + strand, within Psyr_3380at 4039.065 kb on - strand, within Psyr_3380at 4039.065 kb on - strand, within Psyr_3380at 4039.065 kb on - strand, within Psyr_3380at 4039.065 kb on - strand, within Psyr_3380at 4039.065 kb on - strand, within Psyr_3380at 4039.065 kb on - strand, within Psyr_3380at 4039.547 kb on + strand, within Psyr_3380at 4039.547 kb on + strand, within Psyr_3380at 4039.548 kb on - strand, within Psyr_3380at 4039.548 kb on - strand, within Psyr_3380

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
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4,035,952 + +2.6
4,035,952 + -3.5
4,035,953 - -0.4
4,035,953 - +1.0
4,036,006 + -1.3
4,036,018 - -0.0
4,036,061 - -3.2
4,036,140 + -0.0
4,036,140 + +2.0
4,036,204 - -1.4
4,036,319 + Psyr_3377 0.21 +1.8
4,036,319 + Psyr_3377 0.21 -1.8
4,036,319 + Psyr_3377 0.21 +1.0
4,036,320 - Psyr_3377 0.21 +1.6
4,036,320 - Psyr_3377 0.21 -2.3
4,036,629 + Psyr_3377 0.89 +3.0
4,036,720 + +3.3
4,036,721 - +0.7
4,036,759 + -1.9
4,036,759 + -0.0
4,036,759 + -3.4
4,036,759 + +1.0
4,036,759 + +3.1
4,036,759 + +2.3
4,036,760 - -0.7
4,036,760 - -1.0
4,036,760 - -1.6
4,036,760 - -0.0
4,036,813 + -2.7
4,036,813 + +1.0
4,036,813 + +2.3
4,036,814 - -1.3
4,036,814 - -0.4
4,036,814 - +3.0
4,037,011 + Psyr_3378 0.16 -1.5
4,037,011 + Psyr_3378 0.16 +0.1
4,037,033 - Psyr_3378 0.17 -3.1
4,037,224 + Psyr_3378 0.26 +3.8
4,037,224 + Psyr_3378 0.26 -1.4
4,037,225 - Psyr_3378 0.26 -0.5
4,037,225 - Psyr_3378 0.26 -0.0
4,037,238 + Psyr_3378 0.27 +2.6
4,037,782 + Psyr_3378 0.53 +2.8
4,037,801 + Psyr_3378 0.54 -0.8
4,037,802 - Psyr_3378 0.54 -0.0
4,037,929 + Psyr_3378 0.60 -1.6
4,037,930 - Psyr_3378 0.60 -3.9
4,037,977 + Psyr_3378 0.62 -1.7
4,037,978 - Psyr_3378 0.62 -3.3
4,037,978 - Psyr_3378 0.62 -1.6
4,038,520 + Psyr_3378 0.88 -1.7
4,038,738 + -0.4
4,038,873 + Psyr_3379 0.54 +2.6
4,038,907 + Psyr_3379 0.70 -3.1
4,038,907 + Psyr_3379 0.70 +1.0
4,038,907 + Psyr_3379 0.70 -0.3
4,038,907 + Psyr_3379 0.70 -2.6
4,038,907 + Psyr_3379 0.70 +2.0
4,038,907 + Psyr_3379 0.70 +3.9
4,038,907 + Psyr_3379 0.70 -3.6
4,038,908 - Psyr_3379 0.71 +2.0
4,038,908 - Psyr_3379 0.71 -1.2
4,038,908 - Psyr_3379 0.71 -3.6
4,038,913 + Psyr_3379 0.73 +2.3
4,038,913 + Psyr_3379 0.73 +3.3
4,038,913 + Psyr_3379 0.73 -0.5
4,038,913 + Psyr_3379 0.73 +2.6
4,038,913 + Psyr_3379 0.73 -1.5
4,038,913 + Psyr_3379 0.73 +3.3
4,038,914 - Psyr_3379 0.74 +0.2
4,038,914 - Psyr_3379 0.74 +3.1
4,038,915 + Psyr_3379 0.74 -1.0
4,038,915 + Psyr_3379 0.74 -0.7
4,038,916 - Psyr_3379 0.75 -1.5
4,038,916 - Psyr_3379 0.75 +1.4
4,038,916 - Psyr_3379 0.75 -0.4
4,038,916 - Psyr_3379 0.75 -0.0
4,038,946 + Psyr_3379 0.89 +2.3
4,038,946 + Psyr_3379 0.89 -3.8
4,038,947 - Psyr_3379 0.90 -2.8
4,038,947 - Psyr_3379 0.90 +0.1
4,038,947 - Psyr_3379 0.90 +2.0
4,038,947 - Psyr_3379 0.90 -0.5
4,039,039 - +3.3
4,039,039 - -4.3
4,039,055 + Psyr_3380 0.10 -0.0
4,039,055 + Psyr_3380 0.10 -3.4
4,039,055 + Psyr_3380 0.10 +1.0
4,039,055 + Psyr_3380 0.10 +1.6
4,039,055 + Psyr_3380 0.10 -0.6
4,039,055 + Psyr_3380 0.10 +2.8
4,039,055 + Psyr_3380 0.10 -2.8
4,039,055 + Psyr_3380 0.10 -1.2
4,039,056 - Psyr_3380 0.10 -1.6
4,039,056 - Psyr_3380 0.10 -0.3
4,039,056 - Psyr_3380 0.10 -3.8
4,039,056 - Psyr_3380 0.10 -3.4
4,039,056 - Psyr_3380 0.10 +5.3
4,039,056 - Psyr_3380 0.10 -2.0
4,039,056 - Psyr_3380 0.10 +3.3
4,039,056 - Psyr_3380 0.10 +2.6
4,039,056 - Psyr_3380 0.10 -2.8
4,039,056 - Psyr_3380 0.10 -2.2
4,039,056 - Psyr_3380 0.10 -0.7
4,039,058 + Psyr_3380 0.11 -0.0
4,039,058 + Psyr_3380 0.11 +4.1
4,039,058 + Psyr_3380 0.11 -0.3
4,039,058 + Psyr_3380 0.11 +2.6
4,039,058 + Psyr_3380 0.11 +0.2
4,039,058 + Psyr_3380 0.11 -1.1
4,039,058 + Psyr_3380 0.11 +1.0
4,039,058 + Psyr_3380 0.11 +2.3
4,039,058 + Psyr_3380 0.11 -0.5
4,039,058 + Psyr_3380 0.11 +0.8
4,039,058 + Psyr_3380 0.11 +1.6
4,039,058 + -4.4
4,039,058 + Psyr_3380 0.11 -2.3
4,039,059 - Psyr_3380 0.11 -0.0
4,039,059 - Psyr_3380 0.11 -1.1
4,039,059 - Psyr_3380 0.11 -1.0
4,039,059 - Psyr_3380 0.11 -0.9
4,039,059 - Psyr_3380 0.11 -2.2
4,039,059 - Psyr_3380 0.11 -0.0
4,039,059 - Psyr_3380 0.11 -0.2
4,039,059 - Psyr_3380 0.11 -0.0
4,039,059 - Psyr_3380 0.11 +2.8
4,039,059 - +3.0
4,039,059 - Psyr_3380 0.11 +2.6
4,039,059 - Psyr_3380 0.11 -0.0
4,039,059 - Psyr_3380 0.11 +0.5
4,039,059 - Psyr_3380 0.11 -2.2
4,039,059 - Psyr_3380 0.11 -3.4
4,039,059 - Psyr_3380 0.11 +2.3
4,039,059 - Psyr_3380 0.11 -4.9
4,039,059 - Psyr_3380 0.11 -0.7
4,039,064 + Psyr_3380 0.11 +2.0
4,039,064 + Psyr_3380 0.11 -1.8
4,039,064 + Psyr_3380 0.11 +2.0
4,039,064 + Psyr_3380 0.11 -0.0
4,039,064 + Psyr_3380 0.11 -4.4
4,039,064 + Psyr_3380 0.11 -2.0
4,039,064 + Psyr_3380 0.11 +3.0
4,039,064 + Psyr_3380 0.11 -0.0
4,039,064 + Psyr_3380 0.11 +1.0
4,039,064 + Psyr_3380 0.11 -3.0
4,039,064 + Psyr_3380 0.11 -1.1
4,039,065 - Psyr_3380 0.11 -0.0
4,039,065 - Psyr_3380 0.11 -2.4
4,039,065 - Psyr_3380 0.11 +2.0
4,039,065 - Psyr_3380 0.11 -1.1
4,039,065 - Psyr_3380 0.11 -3.5
4,039,065 - Psyr_3380 0.11 +2.8
4,039,547 + Psyr_3380 0.66 -0.0
4,039,547 + Psyr_3380 0.66 +3.3
4,039,548 - Psyr_3380 0.66 -2.8
4,039,548 - Psyr_3380 0.66 +4.4

Or see this region's nucleotide sequence