Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3369 and Psyr_3370 overlap by 4 nucleotides Psyr_3370 and Psyr_3371 are separated by 565 nucleotides
Psyr_3369: Psyr_3369 - Twin-arginine translocation pathway signal:Tat-translocated enzyme:Dyp-type peroxidase, at 4,027,962 to 4,029,284
_3369
Psyr_3370: Psyr_3370 - Protein of unknown function DUF451, at 4,029,281 to 4,030,138
_3370
Psyr_3371: Psyr_3371 - Oxidoreductase, molybdopterin binding protein, at 4,030,704 to 4,031,474
_3371
Position (kb) 4029
4030
4031 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 4028.796 kb on + strand, within Psyr_3369 at 4028.797 kb on - strand, within Psyr_3369 at 4028.934 kb on + strand, within Psyr_3369 at 4028.934 kb on + strand, within Psyr_3369 at 4029.046 kb on - strand, within Psyr_3369 at 4029.046 kb on - strand, within Psyr_3369 at 4029.046 kb on - strand, within Psyr_3369 at 4029.171 kb on + strand at 4029.171 kb on + strand at 4029.172 kb on - strand at 4029.195 kb on + strand at 4029.288 kb on - strand at 4029.288 kb on - strand at 4029.288 kb on - strand at 4029.431 kb on + strand, within Psyr_3370 at 4029.431 kb on + strand, within Psyr_3370 at 4029.431 kb on + strand, within Psyr_3370 at 4029.431 kb on + strand, within Psyr_3370 at 4029.431 kb on + strand, within Psyr_3370 at 4029.432 kb on - strand, within Psyr_3370 at 4029.432 kb on - strand, within Psyr_3370 at 4029.525 kb on - strand, within Psyr_3370 at 4029.542 kb on + strand, within Psyr_3370 at 4029.546 kb on - strand, within Psyr_3370 at 4029.546 kb on - strand, within Psyr_3370 at 4029.669 kb on - strand, within Psyr_3370 at 4029.872 kb on + strand, within Psyr_3370 at 4029.873 kb on - strand, within Psyr_3370 at 4030.007 kb on + strand, within Psyr_3370 at 4030.007 kb on + strand, within Psyr_3370 at 4030.007 kb on + strand, within Psyr_3370 at 4030.008 kb on - strand, within Psyr_3370 at 4030.008 kb on - strand, within Psyr_3370 at 4030.008 kb on - strand, within Psyr_3370 at 4030.008 kb on - strand, within Psyr_3370 at 4030.008 kb on - strand, within Psyr_3370 at 4030.008 kb on - strand, within Psyr_3370 at 4030.008 kb on - strand, within Psyr_3370 at 4030.191 kb on - strand at 4030.254 kb on + strand at 4030.273 kb on + strand at 4030.282 kb on - strand at 4030.510 kb on - strand at 4030.705 kb on + strand at 4030.706 kb on - strand at 4030.726 kb on + strand at 4030.727 kb on - strand at 4030.727 kb on - strand at 4030.727 kb on - strand at 4030.764 kb on - strand at 4030.907 kb on + strand, within Psyr_3371 at 4030.927 kb on + strand, within Psyr_3371 at 4030.928 kb on - strand, within Psyr_3371 at 4030.928 kb on - strand, within Psyr_3371 at 4030.984 kb on + strand, within Psyr_3371 at 4030.984 kb on + strand, within Psyr_3371 at 4030.984 kb on + strand, within Psyr_3371 at 4030.984 kb on + strand, within Psyr_3371 at 4030.985 kb on - strand, within Psyr_3371
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 4,028,796 + Psyr_3369 0.63 +3.4 4,028,797 - Psyr_3369 0.63 +2.0 4,028,934 + Psyr_3369 0.73 -1.3 4,028,934 + Psyr_3369 0.73 -1.7 4,029,046 - Psyr_3369 0.82 +3.6 4,029,046 - Psyr_3369 0.82 -0.6 4,029,046 - Psyr_3369 0.82 +0.5 4,029,171 + +1.0 4,029,171 + -1.8 4,029,172 - +1.0 4,029,195 + +1.0 4,029,288 - -4.8 4,029,288 - -2.3 4,029,288 - -2.1 4,029,431 + Psyr_3370 0.17 -2.4 4,029,431 + Psyr_3370 0.17 -0.0 4,029,431 + Psyr_3370 0.17 +0.3 4,029,431 + Psyr_3370 0.17 -3.6 4,029,431 + Psyr_3370 0.17 -1.8 4,029,432 - Psyr_3370 0.18 +2.6 4,029,432 - Psyr_3370 0.18 -0.2 4,029,525 - Psyr_3370 0.28 -1.7 4,029,542 + Psyr_3370 0.30 +4.0 4,029,546 - Psyr_3370 0.31 -2.6 4,029,546 - Psyr_3370 0.31 +3.6 4,029,669 - Psyr_3370 0.45 +2.6 4,029,872 + Psyr_3370 0.69 -0.0 4,029,873 - Psyr_3370 0.69 -2.2 4,030,007 + Psyr_3370 0.85 +0.2 4,030,007 + Psyr_3370 0.85 +0.2 4,030,007 + Psyr_3370 0.85 +1.0 4,030,008 - Psyr_3370 0.85 +3.0 4,030,008 - Psyr_3370 0.85 +5.3 4,030,008 - Psyr_3370 0.85 +1.6 4,030,008 - Psyr_3370 0.85 -0.0 4,030,008 - Psyr_3370 0.85 +0.8 4,030,008 - Psyr_3370 0.85 +1.6 4,030,008 - Psyr_3370 0.85 -0.6 4,030,191 - -2.8 4,030,254 + +0.1 4,030,273 + +1.8 4,030,282 - +1.6 4,030,510 - +3.7 4,030,705 + -1.5 4,030,706 - +0.8 4,030,726 + -0.0 4,030,727 - -2.2 4,030,727 - +0.2 4,030,727 - -3.5 4,030,764 - +1.6 4,030,907 + Psyr_3371 0.26 -0.9 4,030,927 + Psyr_3371 0.29 -5.2 4,030,928 - Psyr_3371 0.29 +2.3 4,030,928 - Psyr_3371 0.29 +2.8 4,030,984 + Psyr_3371 0.36 -0.0 4,030,984 + Psyr_3371 0.36 -1.8 4,030,984 + Psyr_3371 0.36 +3.9 4,030,984 + Psyr_3371 0.36 -3.8 4,030,985 - Psyr_3371 0.36 -1.9
Or see this region's nucleotide sequence