Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3282 and Psyr_3283 are separated by 256 nucleotides Psyr_3283 and Psyr_3284 are separated by 9 nucleotides Psyr_3284 and Psyr_3285 are separated by 14 nucleotides Psyr_3285 and Psyr_3286 are separated by 64 nucleotides Psyr_3286 and Psyr_3287 are separated by 6 nucleotides
Psyr_3282: Psyr_3282 - transcriptional regulator, TetR family, at 3,929,512 to 3,930,228
_3282
Psyr_3283: Psyr_3283 - SOS-response transcriptional repressor, LexA, at 3,930,485 to 3,931,093
_3283
Psyr_3284: Psyr_3284 - SOS cell division inhibitor SulA, at 3,931,103 to 3,931,573
_3284
Psyr_3285: Psyr_3285 - conserved hypothetical protein, at 3,931,588 to 3,931,821
_3285
Psyr_3286: Psyr_3286 - conserved hypothetical protein, at 3,931,886 to 3,932,524
_3286
Psyr_3287: Psyr_3287 - DNA topoisomerase I, at 3,932,531 to 3,935,143
_3287
Position (kb)
3931
3932 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 3930.138 kb on + strand, within Psyr_3282 at 3930.262 kb on + strand at 3930.262 kb on + strand at 3930.263 kb on - strand at 3930.263 kb on - strand at 3930.263 kb on - strand at 3930.263 kb on - strand at 3930.266 kb on + strand at 3930.334 kb on - strand at 3930.389 kb on - strand at 3930.443 kb on + strand at 3930.444 kb on - strand at 3930.444 kb on - strand at 3930.445 kb on + strand at 3930.446 kb on - strand at 3931.417 kb on - strand, within Psyr_3284 at 3931.425 kb on + strand, within Psyr_3284 at 3931.468 kb on + strand, within Psyr_3284 at 3931.468 kb on + strand, within Psyr_3284 at 3931.503 kb on + strand, within Psyr_3284 at 3931.606 kb on + strand at 3931.606 kb on + strand at 3931.776 kb on + strand, within Psyr_3285 at 3931.815 kb on + strand at 3931.825 kb on + strand at 3931.825 kb on + strand at 3931.831 kb on + strand at 3931.831 kb on + strand at 3931.832 kb on - strand at 3931.832 kb on - strand at 3931.832 kb on - strand at 3931.854 kb on + strand at 3931.855 kb on - strand at 3931.855 kb on - strand at 3931.872 kb on + strand at 3931.873 kb on - strand at 3931.873 kb on - strand at 3932.006 kb on + strand, within Psyr_3286 at 3932.007 kb on - strand, within Psyr_3286 at 3932.007 kb on - strand, within Psyr_3286 at 3932.007 kb on - strand, within Psyr_3286 at 3932.061 kb on + strand, within Psyr_3286 at 3932.061 kb on + strand, within Psyr_3286 at 3932.061 kb on + strand, within Psyr_3286 at 3932.061 kb on + strand, within Psyr_3286 at 3932.061 kb on + strand, within Psyr_3286 at 3932.061 kb on + strand, within Psyr_3286 at 3932.061 kb on + strand, within Psyr_3286 at 3932.062 kb on - strand, within Psyr_3286 at 3932.062 kb on - strand, within Psyr_3286 at 3932.062 kb on - strand, within Psyr_3286 at 3932.062 kb on - strand, within Psyr_3286 at 3932.062 kb on - strand, within Psyr_3286 at 3932.062 kb on - strand, within Psyr_3286 at 3932.062 kb on - strand, within Psyr_3286 at 3932.073 kb on + strand, within Psyr_3286 at 3932.073 kb on + strand, within Psyr_3286 at 3932.085 kb on - strand, within Psyr_3286 at 3932.085 kb on - strand, within Psyr_3286 at 3932.085 kb on - strand, within Psyr_3286 at 3932.123 kb on + strand, within Psyr_3286 at 3932.218 kb on - strand, within Psyr_3286 at 3932.259 kb on + strand, within Psyr_3286 at 3932.259 kb on + strand, within Psyr_3286 at 3932.260 kb on - strand, within Psyr_3286 at 3932.260 kb on - strand, within Psyr_3286 at 3932.260 kb on - strand, within Psyr_3286 at 3932.260 kb on - strand, within Psyr_3286 at 3932.391 kb on + strand, within Psyr_3286 at 3932.391 kb on + strand, within Psyr_3286 at 3932.391 kb on + strand, within Psyr_3286 at 3932.391 kb on + strand, within Psyr_3286 at 3932.391 kb on + strand, within Psyr_3286 at 3932.392 kb on - strand, within Psyr_3286 at 3932.392 kb on - strand, within Psyr_3286 at 3932.392 kb on - strand, within Psyr_3286 at 3932.392 kb on - strand, within Psyr_3286 at 3932.392 kb on - strand, within Psyr_3286 at 3932.392 kb on - strand, within Psyr_3286 at 3932.434 kb on - strand, within Psyr_3286 at 3932.446 kb on - strand, within Psyr_3286
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 3,930,138 + Psyr_3282 0.87 +1.5 3,930,262 + -0.5 3,930,262 + -0.1 3,930,263 - -2.2 3,930,263 - -4.0 3,930,263 - +2.5 3,930,263 - -1.4 3,930,266 + +2.7 3,930,334 - -3.9 3,930,389 - +0.9 3,930,443 + -0.1 3,930,444 - +0.9 3,930,444 - -0.1 3,930,445 + -1.1 3,930,446 - -3.4 3,931,417 - Psyr_3284 0.67 -0.1 3,931,425 + Psyr_3284 0.68 -0.6 3,931,468 + Psyr_3284 0.77 -3.5 3,931,468 + Psyr_3284 0.77 -0.7 3,931,503 + Psyr_3284 0.85 -2.9 3,931,606 + -0.8 3,931,606 + -1.7 3,931,776 + Psyr_3285 0.80 +0.2 3,931,815 + +0.3 3,931,825 + -3.5 3,931,825 + +2.2 3,931,831 + -0.1 3,931,831 + -0.1 3,931,832 - -0.9 3,931,832 - -0.1 3,931,832 - +3.2 3,931,854 + +0.9 3,931,855 - -0.1 3,931,855 - +1.9 3,931,872 + -3.5 3,931,873 - +1.9 3,931,873 - -3.5 3,932,006 + Psyr_3286 0.19 -4.2 3,932,007 - Psyr_3286 0.19 -0.1 3,932,007 - Psyr_3286 0.19 -0.1 3,932,007 - Psyr_3286 0.19 -2.1 3,932,061 + Psyr_3286 0.27 -1.8 3,932,061 + Psyr_3286 0.27 -1.6 3,932,061 + Psyr_3286 0.27 -3.3 3,932,061 + Psyr_3286 0.27 -3.2 3,932,061 + Psyr_3286 0.27 +0.9 3,932,061 + Psyr_3286 0.27 -2.9 3,932,061 + Psyr_3286 0.27 -0.1 3,932,062 - Psyr_3286 0.28 -0.9 3,932,062 - Psyr_3286 0.28 -0.1 3,932,062 - Psyr_3286 0.28 -3.1 3,932,062 - Psyr_3286 0.28 -0.1 3,932,062 - Psyr_3286 0.28 +3.1 3,932,062 - Psyr_3286 0.28 -0.1 3,932,062 - Psyr_3286 0.28 -0.1 3,932,073 + Psyr_3286 0.29 -3.4 3,932,073 + Psyr_3286 0.29 +2.7 3,932,085 - Psyr_3286 0.31 -3.7 3,932,085 - Psyr_3286 0.31 -4.7 3,932,085 - Psyr_3286 0.31 -0.1 3,932,123 + Psyr_3286 0.37 -0.1 3,932,218 - Psyr_3286 0.52 +2.9 3,932,259 + Psyr_3286 0.58 +0.9 3,932,259 + Psyr_3286 0.58 -0.1 3,932,260 - Psyr_3286 0.59 +2.5 3,932,260 - Psyr_3286 0.59 -3.5 3,932,260 - Psyr_3286 0.59 +1.5 3,932,260 - Psyr_3286 0.59 +2.2 3,932,391 + Psyr_3286 0.79 +1.5 3,932,391 + Psyr_3286 0.79 -1.9 3,932,391 + Psyr_3286 0.79 -1.3 3,932,391 + Psyr_3286 0.79 -3.1 3,932,391 + Psyr_3286 0.79 -0.1 3,932,392 - Psyr_3286 0.79 -0.9 3,932,392 - Psyr_3286 0.79 -0.1 3,932,392 - Psyr_3286 0.79 -1.3 3,932,392 - Psyr_3286 0.79 -4.3 3,932,392 - Psyr_3286 0.79 -0.1 3,932,392 - Psyr_3286 0.79 -2.0 3,932,434 - Psyr_3286 0.86 -4.1 3,932,446 - Psyr_3286 0.88 +3.4
Or see this region's nucleotide sequence