Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3237

Experiment: KB with Mitomycin C 0.625 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3236 and Psyr_3237 are separated by 129 nucleotidesPsyr_3237 and Psyr_3238 are separated by 42 nucleotidesPsyr_3238 and Psyr_3239 are separated by 234 nucleotides Psyr_3236: Psyr_3236 - transcriptional regulator, LysR family, at 3,874,607 to 3,875,497 _3236 Psyr_3237: Psyr_3237 - 3-oxoacid CoA-transferase, at 3,875,627 to 3,876,328 _3237 Psyr_3238: Psyr_3238 - 3-oxoacid CoA-transferase, at 3,876,371 to 3,877,027 _3238 Psyr_3239: Psyr_3239 - Short chain fatty acid transporter, at 3,877,262 to 3,878,680 _3239 Position (kb) 3875 3876 3877Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3 4 5at 3874.898 kb on + strand, within Psyr_3236at 3874.898 kb on + strand, within Psyr_3236at 3874.899 kb on - strand, within Psyr_3236at 3875.016 kb on + strand, within Psyr_3236at 3875.016 kb on + strand, within Psyr_3236at 3875.016 kb on + strand, within Psyr_3236at 3875.016 kb on + strand, within Psyr_3236at 3875.016 kb on + strand, within Psyr_3236at 3875.017 kb on - strand, within Psyr_3236at 3875.017 kb on - strand, within Psyr_3236at 3875.017 kb on - strand, within Psyr_3236at 3875.017 kb on - strand, within Psyr_3236at 3875.017 kb on - strand, within Psyr_3236at 3875.239 kb on + strand, within Psyr_3236at 3875.240 kb on - strand, within Psyr_3236at 3875.240 kb on - strand, within Psyr_3236at 3875.454 kb on + strandat 3875.498 kb on - strandat 3875.499 kb on + strandat 3875.609 kb on + strandat 3875.609 kb on + strandat 3875.609 kb on + strandat 3875.609 kb on + strandat 3875.610 kb on - strandat 3875.610 kb on - strandat 3875.611 kb on + strandat 3875.611 kb on + strandat 3875.611 kb on + strandat 3875.611 kb on + strandat 3875.611 kb on + strandat 3875.612 kb on - strandat 3875.612 kb on - strandat 3875.612 kb on - strandat 3875.612 kb on - strandat 3875.612 kb on - strandat 3875.612 kb on - strandat 3875.612 kb on - strandat 3875.612 kb on - strandat 3875.612 kb on - strandat 3875.657 kb on + strandat 3875.658 kb on - strandat 3875.658 kb on - strandat 3875.865 kb on - strand, within Psyr_3237at 3875.987 kb on + strand, within Psyr_3237at 3875.987 kb on + strand, within Psyr_3237at 3875.988 kb on - strand, within Psyr_3237at 3875.988 kb on - strand, within Psyr_3237at 3875.988 kb on - strand, within Psyr_3237at 3875.988 kb on - strand, within Psyr_3237at 3876.134 kb on + strand, within Psyr_3237at 3876.134 kb on + strand, within Psyr_3237at 3876.135 kb on - strand, within Psyr_3237at 3876.135 kb on - strand, within Psyr_3237at 3876.135 kb on - strand, within Psyr_3237at 3876.143 kb on - strand, within Psyr_3237at 3876.260 kb on + strandat 3876.260 kb on + strandat 3876.260 kb on + strandat 3876.261 kb on - strandat 3876.261 kb on - strandat 3876.261 kb on - strandat 3876.261 kb on - strandat 3876.261 kb on - strandat 3876.261 kb on - strandat 3876.276 kb on + strandat 3876.277 kb on - strandat 3876.346 kb on + strandat 3876.432 kb on - strandat 3876.432 kb on - strandat 3876.432 kb on - strandat 3876.432 kb on - strandat 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.477 kb on + strand, within Psyr_3238at 3876.477 kb on + strand, within Psyr_3238at 3876.478 kb on - strand, within Psyr_3238at 3876.673 kb on - strand, within Psyr_3238at 3877.208 kb on + strandat 3877.238 kb on + strandat 3877.238 kb on + strandat 3877.239 kb on - strandat 3877.242 kb on + strandat 3877.242 kb on + strandat 3877.275 kb on + strandat 3877.275 kb on + strandat 3877.275 kb on + strandat 3877.275 kb on + strandat 3877.276 kb on - strandat 3877.276 kb on - strandat 3877.276 kb on - strandat 3877.276 kb on - strandat 3877.276 kb on - strandat 3877.276 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
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3,874,898 + Psyr_3236 0.33 -0.1
3,874,898 + Psyr_3236 0.33 -2.0
3,874,899 - Psyr_3236 0.33 -0.1
3,875,016 + Psyr_3236 0.46 -0.1
3,875,016 + Psyr_3236 0.46 -1.3
3,875,016 + Psyr_3236 0.46 -3.3
3,875,016 + Psyr_3236 0.46 +1.2
3,875,016 + Psyr_3236 0.46 +1.9
3,875,017 - Psyr_3236 0.46 +4.1
3,875,017 - Psyr_3236 0.46 -1.4
3,875,017 - Psyr_3236 0.46 -1.2
3,875,017 - Psyr_3236 0.46 +0.7
3,875,017 - Psyr_3236 0.46 +5.6
3,875,239 + Psyr_3236 0.71 +3.2
3,875,240 - Psyr_3236 0.71 +1.4
3,875,240 - Psyr_3236 0.71 -1.5
3,875,454 + -2.5
3,875,498 - -1.9
3,875,499 + +2.9
3,875,609 + +0.5
3,875,609 + -0.5
3,875,609 + +1.9
3,875,609 + -1.4
3,875,610 - -1.1
3,875,610 - +4.0
3,875,611 + +1.5
3,875,611 + +1.5
3,875,611 + -0.1
3,875,611 + +3.7
3,875,611 + +2.7
3,875,612 - +1.0
3,875,612 - +2.2
3,875,612 - +2.2
3,875,612 - -2.6
3,875,612 - +3.6
3,875,612 - -2.9
3,875,612 - -1.7
3,875,612 - +1.2
3,875,612 - +1.5
3,875,657 + -2.1
3,875,658 - -2.9
3,875,658 - +0.9
3,875,865 - Psyr_3237 0.34 -0.9
3,875,987 + Psyr_3237 0.51 -3.3
3,875,987 + Psyr_3237 0.51 -2.7
3,875,988 - Psyr_3237 0.51 -2.3
3,875,988 - Psyr_3237 0.51 +3.4
3,875,988 - Psyr_3237 0.51 -2.2
3,875,988 - Psyr_3237 0.51 -2.2
3,876,134 + Psyr_3237 0.72 -2.7
3,876,134 + Psyr_3237 0.72 -0.1
3,876,135 - Psyr_3237 0.72 +0.9
3,876,135 - Psyr_3237 0.72 -4.9
3,876,135 - Psyr_3237 0.72 -2.2
3,876,143 - Psyr_3237 0.74 -0.0
3,876,260 + +0.7
3,876,260 + -2.8
3,876,260 + -2.7
3,876,261 - -2.3
3,876,261 - -2.1
3,876,261 - +3.1
3,876,261 - -0.3
3,876,261 - -4.4
3,876,261 - +0.3
3,876,276 + -0.1
3,876,277 - -0.1
3,876,346 + -2.1
3,876,432 - -3.9
3,876,432 - +1.5
3,876,432 - -2.0
3,876,432 - -0.1
3,876,473 + Psyr_3238 0.16 +0.9
3,876,473 + Psyr_3238 0.16 +3.2
3,876,473 + Psyr_3238 0.16 -0.1
3,876,473 + Psyr_3238 0.16 +2.5
3,876,473 + Psyr_3238 0.16 +2.2
3,876,473 + Psyr_3238 0.16 -0.7
3,876,473 + Psyr_3238 0.16 -1.8
3,876,473 + Psyr_3238 0.16 -1.8
3,876,473 + Psyr_3238 0.16 -0.1
3,876,473 + Psyr_3238 0.16 +4.2
3,876,473 + Psyr_3238 0.16 +3.1
3,876,473 + Psyr_3238 0.16 -2.5
3,876,473 + Psyr_3238 0.16 -0.1
3,876,473 + Psyr_3238 0.16 -1.1
3,876,473 + Psyr_3238 0.16 +2.2
3,876,474 - Psyr_3238 0.16 +1.5
3,876,474 - Psyr_3238 0.16 -2.0
3,876,474 - Psyr_3238 0.16 -1.4
3,876,474 - Psyr_3238 0.16 +2.9
3,876,474 - Psyr_3238 0.16 -0.1
3,876,474 - Psyr_3238 0.16 -3.4
3,876,474 - Psyr_3238 0.16 -2.8
3,876,474 - Psyr_3238 0.16 -4.3
3,876,474 - Psyr_3238 0.16 -0.1
3,876,474 - Psyr_3238 0.16 -0.1
3,876,474 - Psyr_3238 0.16 +0.9
3,876,474 - Psyr_3238 0.16 -1.9
3,876,474 - Psyr_3238 0.16 -1.7
3,876,474 - Psyr_3238 0.16 -2.0
3,876,474 - Psyr_3238 0.16 -3.9
3,876,474 - Psyr_3238 0.16 -0.1
3,876,474 - Psyr_3238 0.16 +2.7
3,876,477 + Psyr_3238 0.16 +2.9
3,876,477 + Psyr_3238 0.16 +1.9
3,876,478 - Psyr_3238 0.16 +3.2
3,876,673 - Psyr_3238 0.46 +2.9
3,877,208 + +0.8
3,877,238 + -0.1
3,877,238 + +2.7
3,877,239 - -0.0
3,877,242 + +1.9
3,877,242 + -0.6
3,877,275 + -3.1
3,877,275 + -0.5
3,877,275 + -1.4
3,877,275 + -0.3
3,877,276 - +0.9
3,877,276 - -1.4
3,877,276 - -6.0
3,877,276 - -0.1
3,877,276 - +1.9
3,877,276 - -3.0

Or see this region's nucleotide sequence