Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3181

Experiment: KB with Mitomycin C 0.625 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3180 and Psyr_3181 are separated by 48 nucleotidesPsyr_3181 and Psyr_3182 are separated by 101 nucleotidesPsyr_3182 and Psyr_3183 are separated by 117 nucleotides Psyr_3180: Psyr_3180 - Leucyl/phenylalanyl-tRNA--protein transferase, at 3,808,879 to 3,809,568 _3180 Psyr_3181: Psyr_3181 - Arginyltransferase, at 3,809,617 to 3,810,324 _3181 Psyr_3182: Psyr_3182 - bacterial translation initiation factor 1 (bIF-1), at 3,810,426 to 3,810,644 _3182 Psyr_3183: Psyr_3183 - ATP-dependent Clp protease ATP-binding subunit ClpA, at 3,810,762 to 3,813,035 _3183 Position (kb) 3809 3810 3811Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 3808.682 kb on - strandat 3808.682 kb on - strandat 3808.715 kb on - strandat 3809.198 kb on - strand, within Psyr_3180at 3809.239 kb on + strand, within Psyr_3180at 3809.240 kb on - strand, within Psyr_3180at 3809.240 kb on - strand, within Psyr_3180at 3809.271 kb on + strand, within Psyr_3180at 3809.271 kb on + strand, within Psyr_3180at 3809.272 kb on - strand, within Psyr_3180at 3809.315 kb on - strand, within Psyr_3180at 3809.466 kb on + strand, within Psyr_3180at 3809.467 kb on - strand, within Psyr_3180at 3809.467 kb on - strand, within Psyr_3180at 3809.510 kb on - strandat 3809.579 kb on + strandat 3809.580 kb on - strandat 3809.580 kb on - strandat 3809.580 kb on - strandat 3809.645 kb on - strandat 3809.645 kb on - strandat 3809.729 kb on + strand, within Psyr_3181at 3809.729 kb on + strand, within Psyr_3181at 3809.729 kb on + strand, within Psyr_3181at 3809.730 kb on - strand, within Psyr_3181at 3809.932 kb on + strand, within Psyr_3181at 3809.953 kb on + strand, within Psyr_3181at 3809.953 kb on + strand, within Psyr_3181at 3809.953 kb on + strand, within Psyr_3181at 3809.953 kb on + strand, within Psyr_3181at 3809.955 kb on + strand, within Psyr_3181at 3809.955 kb on + strand, within Psyr_3181at 3809.955 kb on + strand, within Psyr_3181at 3810.124 kb on + strand, within Psyr_3181at 3810.262 kb on + strandat 3810.262 kb on + strandat 3810.262 kb on + strandat 3810.262 kb on + strandat 3810.262 kb on + strandat 3810.262 kb on + strandat 3810.406 kb on + strandat 3810.406 kb on + strandat 3810.672 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
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3,808,682 - -0.4
3,808,682 - +1.5
3,808,715 - -3.7
3,809,198 - Psyr_3180 0.46 -0.4
3,809,239 + Psyr_3180 0.52 -1.8
3,809,240 - Psyr_3180 0.52 -2.3
3,809,240 - Psyr_3180 0.52 -1.0
3,809,271 + Psyr_3180 0.57 -3.0
3,809,271 + Psyr_3180 0.57 +2.2
3,809,272 - Psyr_3180 0.57 +0.9
3,809,315 - Psyr_3180 0.63 -1.9
3,809,466 + Psyr_3180 0.85 -2.9
3,809,467 - Psyr_3180 0.85 -0.1
3,809,467 - Psyr_3180 0.85 -0.6
3,809,510 - +2.7
3,809,579 + -0.6
3,809,580 - +2.5
3,809,580 - -1.3
3,809,580 - +2.9
3,809,645 - -4.6
3,809,645 - -0.3
3,809,729 + Psyr_3181 0.16 -2.3
3,809,729 + Psyr_3181 0.16 -0.2
3,809,729 + Psyr_3181 0.16 -0.1
3,809,730 - Psyr_3181 0.16 +3.3
3,809,932 + Psyr_3181 0.44 -4.0
3,809,953 + Psyr_3181 0.47 -2.4
3,809,953 + Psyr_3181 0.47 +2.7
3,809,953 + Psyr_3181 0.47 -3.2
3,809,953 + Psyr_3181 0.47 -1.7
3,809,955 + Psyr_3181 0.48 -2.9
3,809,955 + Psyr_3181 0.48 -1.3
3,809,955 + Psyr_3181 0.48 -2.7
3,810,124 + Psyr_3181 0.72 -0.1
3,810,262 + +1.9
3,810,262 + -0.1
3,810,262 + -2.9
3,810,262 + +2.5
3,810,262 + +3.2
3,810,262 + -3.9
3,810,406 + +0.2
3,810,406 + +2.7
3,810,672 - -5.3

Or see this region's nucleotide sequence