Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3140

Experiment: KB with Mitomycin C 0.625 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3139 and Psyr_3140 are separated by 43 nucleotidesPsyr_3140 and Psyr_3141 are separated by 74 nucleotides Psyr_3139: Psyr_3139 - conserved hypothetical protein, at 3,765,196 to 3,765,942 _3139 Psyr_3140: Psyr_3140 - Phospholipase/Carboxylesterase, at 3,765,986 to 3,766,708 _3140 Psyr_3141: Psyr_3141 - type II and III secretion system protein:NolW-like protein, at 3,766,783 to 3,769,113 _3141 Position (kb) 3765 3766 3767Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 3765.050 kb on + strandat 3765.050 kb on + strandat 3765.050 kb on + strandat 3765.102 kb on + strandat 3765.102 kb on + strandat 3765.102 kb on + strandat 3765.103 kb on - strandat 3765.103 kb on - strandat 3765.103 kb on - strandat 3765.103 kb on - strandat 3765.103 kb on - strandat 3765.276 kb on + strand, within Psyr_3139at 3765.276 kb on + strand, within Psyr_3139at 3765.276 kb on + strand, within Psyr_3139at 3765.276 kb on + strand, within Psyr_3139at 3765.276 kb on + strand, within Psyr_3139at 3765.277 kb on - strand, within Psyr_3139at 3765.277 kb on - strand, within Psyr_3139at 3765.277 kb on - strand, within Psyr_3139at 3765.277 kb on - strand, within Psyr_3139at 3765.277 kb on - strand, within Psyr_3139at 3765.295 kb on + strand, within Psyr_3139at 3765.330 kb on + strand, within Psyr_3139at 3765.397 kb on + strand, within Psyr_3139at 3765.397 kb on + strand, within Psyr_3139at 3765.397 kb on + strand, within Psyr_3139at 3765.397 kb on + strand, within Psyr_3139at 3765.397 kb on + strand, within Psyr_3139at 3765.398 kb on - strand, within Psyr_3139at 3765.464 kb on + strand, within Psyr_3139at 3765.465 kb on - strand, within Psyr_3139at 3765.602 kb on + strand, within Psyr_3139at 3765.602 kb on + strand, within Psyr_3139at 3765.602 kb on + strand, within Psyr_3139at 3765.602 kb on + strand, within Psyr_3139at 3765.602 kb on + strand, within Psyr_3139at 3765.602 kb on + strand, within Psyr_3139at 3765.602 kb on + strand, within Psyr_3139at 3765.602 kb on + strand, within Psyr_3139at 3765.602 kb on + strand, within Psyr_3139at 3765.602 kb on + strand, within Psyr_3139at 3765.602 kb on + strand, within Psyr_3139at 3765.602 kb on + strand, within Psyr_3139at 3765.602 kb on + strand, within Psyr_3139at 3765.602 kb on + strand, within Psyr_3139at 3765.602 kb on + strand, within Psyr_3139at 3765.603 kb on - strand, within Psyr_3139at 3765.603 kb on - strand, within Psyr_3139at 3765.603 kb on - strand, within Psyr_3139at 3765.603 kb on - strand, within Psyr_3139at 3765.603 kb on - strand, within Psyr_3139at 3765.603 kb on - strand, within Psyr_3139at 3765.603 kb on - strand, within Psyr_3139at 3765.603 kb on - strand, within Psyr_3139at 3765.603 kb on - strand, within Psyr_3139at 3765.603 kb on - strand, within Psyr_3139at 3765.603 kb on - strand, within Psyr_3139at 3765.603 kb on - strand, within Psyr_3139at 3765.603 kb on - strand, within Psyr_3139at 3765.603 kb on - strand, within Psyr_3139at 3765.603 kb on - strand, within Psyr_3139at 3765.603 kb on - strand, within Psyr_3139at 3765.603 kb on - strand, within Psyr_3139at 3765.603 kb on - strand, within Psyr_3139at 3765.603 kb on - strand, within Psyr_3139at 3765.603 kb on - strand, within Psyr_3139at 3765.603 kb on - strand, within Psyr_3139at 3765.606 kb on + strand, within Psyr_3139at 3765.606 kb on + strand, within Psyr_3139at 3765.606 kb on + strand, within Psyr_3139at 3765.606 kb on + strandat 3765.606 kb on + strand, within Psyr_3139at 3765.607 kb on - strand, within Psyr_3139at 3765.669 kb on + strand, within Psyr_3139at 3765.940 kb on + strandat 3765.940 kb on + strandat 3765.941 kb on - strandat 3765.941 kb on - strandat 3765.941 kb on - strandat 3765.941 kb on - strandat 3765.941 kb on - strandat 3765.941 kb on - strandat 3765.941 kb on - strandat 3765.941 kb on - strandat 3765.983 kb on + strandat 3765.983 kb on + strandat 3765.983 kb on + strandat 3765.983 kb on + strandat 3765.984 kb on - strandat 3765.984 kb on - strandat 3765.984 kb on - strandat 3765.984 kb on - strandat 3766.065 kb on + strand, within Psyr_3140at 3766.066 kb on - strand, within Psyr_3140at 3766.066 kb on - strand, within Psyr_3140at 3766.066 kb on - strand, within Psyr_3140at 3766.073 kb on + strand, within Psyr_3140at 3766.073 kb on + strand, within Psyr_3140at 3766.073 kb on + strand, within Psyr_3140at 3766.073 kb on + strand, within Psyr_3140at 3766.073 kb on + strand, within Psyr_3140at 3766.073 kb on + strandat 3766.073 kb on + strand, within Psyr_3140at 3766.073 kb on + strand, within Psyr_3140at 3766.073 kb on + strand, within Psyr_3140at 3766.073 kb on + strand, within Psyr_3140at 3766.074 kb on - strand, within Psyr_3140at 3766.074 kb on - strand, within Psyr_3140at 3766.074 kb on - strand, within Psyr_3140at 3766.074 kb on - strand, within Psyr_3140at 3766.074 kb on - strand, within Psyr_3140at 3766.074 kb on - strand, within Psyr_3140at 3766.074 kb on - strand, within Psyr_3140at 3766.074 kb on - strand, within Psyr_3140at 3766.074 kb on - strand, within Psyr_3140at 3766.074 kb on - strand, within Psyr_3140at 3766.131 kb on + strand, within Psyr_3140at 3766.131 kb on + strand, within Psyr_3140at 3766.169 kb on + strand, within Psyr_3140at 3766.170 kb on - strand, within Psyr_3140at 3766.170 kb on - strand, within Psyr_3140at 3766.287 kb on + strand, within Psyr_3140at 3766.288 kb on - strand, within Psyr_3140at 3766.288 kb on - strand, within Psyr_3140at 3766.423 kb on - strand, within Psyr_3140at 3766.458 kb on + strand, within Psyr_3140at 3766.458 kb on + strand, within Psyr_3140at 3766.458 kb on + strand, within Psyr_3140at 3766.458 kb on + strand, within Psyr_3140at 3766.459 kb on - strand, within Psyr_3140at 3766.459 kb on - strand, within Psyr_3140at 3766.459 kb on - strand, within Psyr_3140at 3766.500 kb on + strand, within Psyr_3140at 3766.500 kb on + strand, within Psyr_3140at 3766.500 kb on + strand, within Psyr_3140at 3766.500 kb on + strand, within Psyr_3140at 3766.500 kb on + strand, within Psyr_3140at 3766.500 kb on + strand, within Psyr_3140at 3766.500 kb on + strand, within Psyr_3140at 3766.500 kb on + strand, within Psyr_3140at 3766.500 kb on + strand, within Psyr_3140at 3766.500 kb on + strand, within Psyr_3140at 3766.500 kb on + strand, within Psyr_3140at 3766.500 kb on + strand, within Psyr_3140at 3766.500 kb on + strand, within Psyr_3140at 3766.501 kb on - strand, within Psyr_3140at 3766.501 kb on - strand, within Psyr_3140at 3766.501 kb on - strand, within Psyr_3140at 3766.501 kb on - strand, within Psyr_3140at 3766.501 kb on - strand, within Psyr_3140at 3766.501 kb on - strand, within Psyr_3140at 3766.501 kb on - strand, within Psyr_3140at 3766.501 kb on - strand, within Psyr_3140at 3766.501 kb on - strand, within Psyr_3140at 3766.501 kb on - strand, within Psyr_3140at 3766.501 kb on - strand, within Psyr_3140at 3766.501 kb on - strand, within Psyr_3140at 3766.501 kb on - strand, within Psyr_3140at 3766.501 kb on - strand, within Psyr_3140at 3766.501 kb on - strand, within Psyr_3140at 3766.501 kb on - strand, within Psyr_3140at 3766.501 kb on - strand, within Psyr_3140at 3766.501 kb on - strand, within Psyr_3140at 3766.501 kb on - strand, within Psyr_3140at 3766.501 kb on - strand, within Psyr_3140at 3766.506 kb on + strand, within Psyr_3140at 3766.506 kb on + strand, within Psyr_3140at 3766.507 kb on - strand, within Psyr_3140at 3766.685 kb on + strandat 3766.686 kb on - strandat 3766.936 kb on - strandat 3766.976 kb on + strandat 3767.085 kb on + strand, within Psyr_3141at 3767.154 kb on + strand, within Psyr_3141at 3767.154 kb on + strand, within Psyr_3141at 3767.155 kb on - strand, within Psyr_3141at 3767.155 kb on - strand, within Psyr_3141at 3767.155 kb on - strand, within Psyr_3141at 3767.155 kb on - strand, within Psyr_3141at 3767.156 kb on + strand, within Psyr_3141at 3767.156 kb on + strand, within Psyr_3141at 3767.156 kb on + strand, within Psyr_3141at 3767.156 kb on + strand, within Psyr_3141at 3767.156 kb on + strand, within Psyr_3141at 3767.156 kb on + strand, within Psyr_3141at 3767.156 kb on + strand, within Psyr_3141at 3767.156 kb on + strand, within Psyr_3141at 3767.156 kb on + strand, within Psyr_3141at 3767.156 kb on + strand, within Psyr_3141at 3767.156 kb on + strand, within Psyr_3141at 3767.156 kb on + strand, within Psyr_3141at 3767.156 kb on + strand, within Psyr_3141at 3767.156 kb on + strand, within Psyr_3141at 3767.156 kb on + strand, within Psyr_3141at 3767.157 kb on - strand, within Psyr_3141at 3767.157 kb on - strand, within Psyr_3141at 3767.157 kb on - strand, within Psyr_3141at 3767.157 kb on - strand, within Psyr_3141at 3767.157 kb on - strand, within Psyr_3141at 3767.157 kb on - strand, within Psyr_3141at 3767.157 kb on - strand, within Psyr_3141at 3767.157 kb on - strand, within Psyr_3141at 3767.157 kb on - strand, within Psyr_3141at 3767.216 kb on + strand, within Psyr_3141at 3767.216 kb on + strand, within Psyr_3141at 3767.217 kb on - strand, within Psyr_3141at 3767.217 kb on - strand, within Psyr_3141at 3767.217 kb on - strand, within Psyr_3141at 3767.414 kb on + strand, within Psyr_3141at 3767.414 kb on + strand, within Psyr_3141at 3767.414 kb on + strand, within Psyr_3141at 3767.414 kb on + strand, within Psyr_3141at 3767.415 kb on - strand, within Psyr_3141

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
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3,765,050 + +1.4
3,765,050 + +0.8
3,765,050 + -0.2
3,765,102 + +2.4
3,765,102 + -0.2
3,765,102 + -0.2
3,765,103 - -0.2
3,765,103 - +2.8
3,765,103 - -1.3
3,765,103 - +3.8
3,765,103 - +1.2
3,765,276 + Psyr_3139 0.11 -1.6
3,765,276 + Psyr_3139 0.11 -1.2
3,765,276 + Psyr_3139 0.11 -1.2
3,765,276 + Psyr_3139 0.11 -0.2
3,765,276 + Psyr_3139 0.11 -2.3
3,765,277 - Psyr_3139 0.11 -2.4
3,765,277 - Psyr_3139 0.11 +1.8
3,765,277 - Psyr_3139 0.11 -0.2
3,765,277 - Psyr_3139 0.11 +3.3
3,765,277 - Psyr_3139 0.11 -0.2
3,765,295 + Psyr_3139 0.13 -1.5
3,765,330 + Psyr_3139 0.18 -1.2
3,765,397 + Psyr_3139 0.27 -4.0
3,765,397 + Psyr_3139 0.27 -1.5
3,765,397 + Psyr_3139 0.27 -0.2
3,765,397 + Psyr_3139 0.27 -1.8
3,765,397 + Psyr_3139 0.27 -2.0
3,765,398 - Psyr_3139 0.27 +0.8
3,765,464 + Psyr_3139 0.36 -4.2
3,765,465 - Psyr_3139 0.36 -0.2
3,765,602 + Psyr_3139 0.54 +1.3
3,765,602 + Psyr_3139 0.54 +3.4
3,765,602 + Psyr_3139 0.54 -0.7
3,765,602 + Psyr_3139 0.54 -4.4
3,765,602 + Psyr_3139 0.54 +1.0
3,765,602 + Psyr_3139 0.54 -0.9
3,765,602 + Psyr_3139 0.54 -2.7
3,765,602 + Psyr_3139 0.54 -3.6
3,765,602 + Psyr_3139 0.54 +1.4
3,765,602 + Psyr_3139 0.54 -0.8
3,765,602 + Psyr_3139 0.54 +2.4
3,765,602 + Psyr_3139 0.54 +1.1
3,765,602 + Psyr_3139 0.54 +3.0
3,765,602 + Psyr_3139 0.54 -1.4
3,765,602 + Psyr_3139 0.54 -0.2
3,765,603 - Psyr_3139 0.54 +1.8
3,765,603 - Psyr_3139 0.54 -3.3
3,765,603 - Psyr_3139 0.54 -3.3
3,765,603 - Psyr_3139 0.54 +1.4
3,765,603 - Psyr_3139 0.54 +3.6
3,765,603 - Psyr_3139 0.54 -1.7
3,765,603 - Psyr_3139 0.54 -3.6
3,765,603 - Psyr_3139 0.54 -0.6
3,765,603 - Psyr_3139 0.54 -1.1
3,765,603 - Psyr_3139 0.54 -0.8
3,765,603 - Psyr_3139 0.54 +0.3
3,765,603 - Psyr_3139 0.54 -0.2
3,765,603 - Psyr_3139 0.54 +3.0
3,765,603 - Psyr_3139 0.54 +3.2
3,765,603 - Psyr_3139 0.54 -0.2
3,765,603 - Psyr_3139 0.54 -1.6
3,765,603 - Psyr_3139 0.54 +1.8
3,765,603 - Psyr_3139 0.54 -0.9
3,765,603 - Psyr_3139 0.54 -0.2
3,765,603 - Psyr_3139 0.54 -0.5
3,765,603 - Psyr_3139 0.54 -0.4
3,765,606 + Psyr_3139 0.55 -1.5
3,765,606 + Psyr_3139 0.55 -0.2
3,765,606 + Psyr_3139 0.55 -0.2
3,765,606 + -0.2
3,765,606 + Psyr_3139 0.55 +1.8
3,765,607 - Psyr_3139 0.55 +3.0
3,765,669 + Psyr_3139 0.63 +0.1
3,765,940 + +2.8
3,765,940 + -0.5
3,765,941 - +2.6
3,765,941 - -0.2
3,765,941 - -2.4
3,765,941 - -2.8
3,765,941 - -1.6
3,765,941 - -0.2
3,765,941 - +2.2
3,765,941 - +3.0
3,765,983 + -1.5
3,765,983 + +0.8
3,765,983 + -1.1
3,765,983 + +1.8
3,765,984 - +0.1
3,765,984 - +0.2
3,765,984 - -1.9
3,765,984 - -0.2
3,766,065 + Psyr_3140 0.11 +0.1
3,766,066 - Psyr_3140 0.11 +2.9
3,766,066 - Psyr_3140 0.11 -2.8
3,766,066 - Psyr_3140 0.11 -1.1
3,766,073 + Psyr_3140 0.12 -1.7
3,766,073 + Psyr_3140 0.12 +0.3
3,766,073 + Psyr_3140 0.12 +1.4
3,766,073 + Psyr_3140 0.12 -0.9
3,766,073 + Psyr_3140 0.12 -3.9
3,766,073 + -0.2
3,766,073 + Psyr_3140 0.12 +1.4
3,766,073 + Psyr_3140 0.12 -2.4
3,766,073 + Psyr_3140 0.12 +2.2
3,766,073 + Psyr_3140 0.12 +1.4
3,766,074 - Psyr_3140 0.12 -1.2
3,766,074 - Psyr_3140 0.12 +3.8
3,766,074 - Psyr_3140 0.12 -0.3
3,766,074 - Psyr_3140 0.12 +0.0
3,766,074 - Psyr_3140 0.12 -0.2
3,766,074 - Psyr_3140 0.12 -1.7
3,766,074 - Psyr_3140 0.12 +1.0
3,766,074 - Psyr_3140 0.12 -0.8
3,766,074 - Psyr_3140 0.12 -1.9
3,766,074 - Psyr_3140 0.12 +0.0
3,766,131 + Psyr_3140 0.20 -3.0
3,766,131 + Psyr_3140 0.20 -2.5
3,766,169 + Psyr_3140 0.25 -1.3
3,766,170 - Psyr_3140 0.25 -0.2
3,766,170 - Psyr_3140 0.25 +1.4
3,766,287 + Psyr_3140 0.42 -1.2
3,766,288 - Psyr_3140 0.42 -0.6
3,766,288 - Psyr_3140 0.42 +0.7
3,766,423 - Psyr_3140 0.60 -1.7
3,766,458 + Psyr_3140 0.65 +0.6
3,766,458 + Psyr_3140 0.65 +0.8
3,766,458 + Psyr_3140 0.65 -1.2
3,766,458 + Psyr_3140 0.65 -1.7
3,766,459 - Psyr_3140 0.65 +3.0
3,766,459 - Psyr_3140 0.65 +2.2
3,766,459 - Psyr_3140 0.65 +1.8
3,766,500 + Psyr_3140 0.71 -2.4
3,766,500 + Psyr_3140 0.71 +3.3
3,766,500 + Psyr_3140 0.71 -4.3
3,766,500 + Psyr_3140 0.71 +1.8
3,766,500 + Psyr_3140 0.71 -1.3
3,766,500 + Psyr_3140 0.71 +2.6
3,766,500 + Psyr_3140 0.71 +2.2
3,766,500 + Psyr_3140 0.71 +3.2
3,766,500 + Psyr_3140 0.71 +1.8
3,766,500 + Psyr_3140 0.71 +3.2
3,766,500 + Psyr_3140 0.71 -4.0
3,766,500 + Psyr_3140 0.71 +1.4
3,766,500 + Psyr_3140 0.71 -0.2
3,766,501 - Psyr_3140 0.71 -0.2
3,766,501 - Psyr_3140 0.71 -1.2
3,766,501 - Psyr_3140 0.71 +2.2
3,766,501 - Psyr_3140 0.71 +2.6
3,766,501 - Psyr_3140 0.71 +3.0
3,766,501 - Psyr_3140 0.71 -3.9
3,766,501 - Psyr_3140 0.71 +2.6
3,766,501 - Psyr_3140 0.71 -1.1
3,766,501 - Psyr_3140 0.71 +2.2
3,766,501 - Psyr_3140 0.71 -1.8
3,766,501 - Psyr_3140 0.71 +0.3
3,766,501 - Psyr_3140 0.71 +0.4
3,766,501 - Psyr_3140 0.71 +3.8
3,766,501 - Psyr_3140 0.71 +3.3
3,766,501 - Psyr_3140 0.71 -0.9
3,766,501 - Psyr_3140 0.71 -2.2
3,766,501 - Psyr_3140 0.71 +3.4
3,766,501 - Psyr_3140 0.71 +0.6
3,766,501 - Psyr_3140 0.71 -0.2
3,766,501 - Psyr_3140 0.71 +0.8
3,766,506 + Psyr_3140 0.72 -1.6
3,766,506 + Psyr_3140 0.72 +4.1
3,766,507 - Psyr_3140 0.72 -1.2
3,766,685 + -1.1
3,766,686 - +2.6
3,766,936 - -0.2
3,766,976 + -3.6
3,767,085 + Psyr_3141 0.13 +0.6
3,767,154 + Psyr_3141 0.16 -0.7
3,767,154 + Psyr_3141 0.16 +2.4
3,767,155 - Psyr_3141 0.16 -0.0
3,767,155 - Psyr_3141 0.16 +2.8
3,767,155 - Psyr_3141 0.16 +0.5
3,767,155 - Psyr_3141 0.16 -1.8
3,767,156 + Psyr_3141 0.16 -2.4
3,767,156 + Psyr_3141 0.16 -2.0
3,767,156 + Psyr_3141 0.16 +4.9
3,767,156 + Psyr_3141 0.16 +2.8
3,767,156 + Psyr_3141 0.16 +2.4
3,767,156 + Psyr_3141 0.16 +4.3
3,767,156 + Psyr_3141 0.16 +1.4
3,767,156 + Psyr_3141 0.16 -0.7
3,767,156 + Psyr_3141 0.16 +0.8
3,767,156 + Psyr_3141 0.16 +2.4
3,767,156 + Psyr_3141 0.16 +0.9
3,767,156 + Psyr_3141 0.16 -2.2
3,767,156 + Psyr_3141 0.16 +0.2
3,767,156 + Psyr_3141 0.16 -1.2
3,767,156 + Psyr_3141 0.16 -0.5
3,767,157 - Psyr_3141 0.16 +0.2
3,767,157 - Psyr_3141 0.16 +1.4
3,767,157 - Psyr_3141 0.16 -2.4
3,767,157 - Psyr_3141 0.16 +4.0
3,767,157 - Psyr_3141 0.16 +0.8
3,767,157 - Psyr_3141 0.16 -0.7
3,767,157 - Psyr_3141 0.16 -0.2
3,767,157 - Psyr_3141 0.16 +2.6
3,767,157 - Psyr_3141 0.16 +4.2
3,767,216 + Psyr_3141 0.19 -1.4
3,767,216 + Psyr_3141 0.19 +2.2
3,767,217 - Psyr_3141 0.19 +2.4
3,767,217 - Psyr_3141 0.19 -0.7
3,767,217 - Psyr_3141 0.19 -1.7
3,767,414 + Psyr_3141 0.27 +2.4
3,767,414 + Psyr_3141 0.27 -4.5
3,767,414 + Psyr_3141 0.27 +1.8
3,767,414 + Psyr_3141 0.27 +2.6
3,767,415 - Psyr_3141 0.27 +1.4

Or see this region's nucleotide sequence