Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3114

Experiment: KB with Mitomycin C 0.625 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3113 and Psyr_3114 are separated by 125 nucleotidesPsyr_3114 and Psyr_3115 are separated by 172 nucleotides Psyr_3113: Psyr_3113 - N-acylglucosamine 2-epimerase, at 3,730,375 to 3,731,619 _3113 Psyr_3114: Psyr_3114 - methyl-accepting chemotaxis sensory transducer, at 3,731,745 to 3,733,370 _3114 Psyr_3115: Psyr_3115 - Glycerate kinase, at 3,733,543 to 3,734,682 _3115 Position (kb) 3731 3732 3733 3734Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 3730.910 kb on + strand, within Psyr_3113at 3730.911 kb on - strand, within Psyr_3113at 3731.267 kb on + strandat 3731.267 kb on + strand, within Psyr_3113at 3731.267 kb on + strand, within Psyr_3113at 3731.267 kb on + strand, within Psyr_3113at 3731.267 kb on + strand, within Psyr_3113at 3731.268 kb on - strand, within Psyr_3113at 3731.268 kb on - strand, within Psyr_3113at 3731.268 kb on - strand, within Psyr_3113at 3731.394 kb on + strand, within Psyr_3113at 3731.395 kb on - strand, within Psyr_3113at 3731.481 kb on - strand, within Psyr_3113at 3731.481 kb on - strand, within Psyr_3113at 3731.607 kb on + strandat 3731.607 kb on + strandat 3731.608 kb on - strandat 3731.613 kb on + strandat 3731.613 kb on + strandat 3731.661 kb on + strandat 3731.688 kb on + strandat 3731.689 kb on - strandat 3731.731 kb on - strandat 3731.746 kb on + strandat 3731.746 kb on + strandat 3732.380 kb on + strand, within Psyr_3114at 3732.666 kb on - strand, within Psyr_3114at 3732.792 kb on - strand, within Psyr_3114at 3732.862 kb on + strand, within Psyr_3114at 3732.862 kb on + strand, within Psyr_3114at 3732.862 kb on + strand, within Psyr_3114at 3732.862 kb on + strand, within Psyr_3114at 3732.863 kb on - strand, within Psyr_3114at 3732.863 kb on - strand, within Psyr_3114at 3732.863 kb on - strand, within Psyr_3114at 3732.863 kb on - strand, within Psyr_3114at 3732.863 kb on - strand, within Psyr_3114at 3732.863 kb on - strand, within Psyr_3114at 3732.863 kb on - strand, within Psyr_3114at 3733.120 kb on + strand, within Psyr_3114at 3733.316 kb on + strandat 3733.316 kb on + strandat 3733.316 kb on + strandat 3733.362 kb on + strandat 3733.384 kb on + strandat 3733.386 kb on + strandat 3733.453 kb on - strandat 3733.488 kb on + strandat 3733.488 kb on + strandat 3733.492 kb on + strandat 3733.493 kb on - strandat 3733.682 kb on + strand, within Psyr_3115at 3733.682 kb on + strand, within Psyr_3115at 3733.682 kb on + strand, within Psyr_3115at 3733.682 kb on + strand, within Psyr_3115at 3733.682 kb on + strand, within Psyr_3115at 3733.683 kb on - strand, within Psyr_3115at 3733.683 kb on - strand, within Psyr_3115at 3733.683 kb on - strand, within Psyr_3115at 3733.683 kb on - strand, within Psyr_3115at 3733.683 kb on - strand, within Psyr_3115at 3733.683 kb on - strand, within Psyr_3115at 3733.904 kb on + strand, within Psyr_3115

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
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3,730,910 + Psyr_3113 0.43 -3.5
3,730,911 - Psyr_3113 0.43 -1.2
3,731,267 + -0.2
3,731,267 + Psyr_3113 0.72 -0.9
3,731,267 + Psyr_3113 0.72 -2.2
3,731,267 + Psyr_3113 0.72 -1.8
3,731,267 + Psyr_3113 0.72 +4.8
3,731,268 - Psyr_3113 0.72 -2.5
3,731,268 - Psyr_3113 0.72 -1.6
3,731,268 - Psyr_3113 0.72 -3.1
3,731,394 + Psyr_3113 0.82 +3.1
3,731,395 - Psyr_3113 0.82 +2.4
3,731,481 - Psyr_3113 0.89 +2.6
3,731,481 - Psyr_3113 0.89 -0.5
3,731,607 + -2.4
3,731,607 + +2.1
3,731,608 - +1.4
3,731,613 + +1.8
3,731,613 + +3.4
3,731,661 + -2.3
3,731,688 + +1.6
3,731,689 - -0.6
3,731,731 - +4.6
3,731,746 + +0.4
3,731,746 + +3.5
3,732,380 + Psyr_3114 0.39 +2.8
3,732,666 - Psyr_3114 0.57 -3.1
3,732,792 - Psyr_3114 0.64 -2.5
3,732,862 + Psyr_3114 0.69 -0.9
3,732,862 + Psyr_3114 0.69 -3.9
3,732,862 + Psyr_3114 0.69 -2.6
3,732,862 + Psyr_3114 0.69 -2.8
3,732,863 - Psyr_3114 0.69 +0.4
3,732,863 - Psyr_3114 0.69 -0.2
3,732,863 - Psyr_3114 0.69 -0.6
3,732,863 - Psyr_3114 0.69 -2.1
3,732,863 - Psyr_3114 0.69 +2.4
3,732,863 - Psyr_3114 0.69 -0.2
3,732,863 - Psyr_3114 0.69 -1.5
3,733,120 + Psyr_3114 0.85 -3.1
3,733,316 + -0.2
3,733,316 + -2.3
3,733,316 + -0.8
3,733,362 + +1.4
3,733,384 + -2.7
3,733,386 + -0.2
3,733,453 - +2.6
3,733,488 + +4.0
3,733,488 + +1.4
3,733,492 + +3.8
3,733,493 - -2.3
3,733,682 + Psyr_3115 0.12 -1.2
3,733,682 + Psyr_3115 0.12 -3.1
3,733,682 + Psyr_3115 0.12 -4.0
3,733,682 + Psyr_3115 0.12 +1.4
3,733,682 + Psyr_3115 0.12 +4.0
3,733,683 - Psyr_3115 0.12 +1.4
3,733,683 - Psyr_3115 0.12 +2.4
3,733,683 - Psyr_3115 0.12 -0.4
3,733,683 - Psyr_3115 0.12 +0.2
3,733,683 - Psyr_3115 0.12 -1.7
3,733,683 - Psyr_3115 0.12 -1.4
3,733,904 + Psyr_3115 0.32 +2.6

Or see this region's nucleotide sequence