Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3056

Experiment: KB with Mitomycin C 0.625 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3054 and Psyr_3055 overlap by 4 nucleotidesPsyr_3055 and Psyr_3056 are separated by 10 nucleotidesPsyr_3056 and Psyr_3057 overlap by 23 nucleotidesPsyr_3057 and Psyr_3058 are separated by 2 nucleotides Psyr_3054: Psyr_3054 - Choline/ethanolamine kinase:Aminoglycoside phosphotransferase, at 3,651,609 to 3,652,544 _3054 Psyr_3055: Psyr_3055 - Aminoglycoside phosphotransferase, at 3,652,541 to 3,653,494 _3055 Psyr_3056: Psyr_3056 - Amidase, hydantoinase/carbamoylase, at 3,653,505 to 3,654,785 _3056 Psyr_3057: Psyr_3057 - transcriptional regulator, DeoR family, at 3,654,763 to 3,655,599 _3057 Psyr_3058: Psyr_3058 - Amidase, at 3,655,602 to 3,657,005 _3058 Position (kb) 3653 3654 3655Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3652.716 kb on + strand, within Psyr_3055at 3652.855 kb on - strand, within Psyr_3055at 3653.328 kb on + strand, within Psyr_3055at 3653.329 kb on - strand, within Psyr_3055at 3653.487 kb on + strandat 3653.488 kb on - strandat 3653.488 kb on - strandat 3653.731 kb on - strand, within Psyr_3056at 3653.731 kb on - strand, within Psyr_3056at 3653.944 kb on + strand, within Psyr_3056at 3654.100 kb on - strand, within Psyr_3056at 3654.473 kb on - strand, within Psyr_3056at 3654.474 kb on + strand, within Psyr_3056at 3654.474 kb on + strand, within Psyr_3056at 3654.474 kb on + strand, within Psyr_3056at 3654.474 kb on + strand, within Psyr_3056at 3654.474 kb on + strand, within Psyr_3056at 3654.474 kb on + strand, within Psyr_3056at 3654.474 kb on + strand, within Psyr_3056at 3654.474 kb on + strand, within Psyr_3056at 3654.474 kb on + strand, within Psyr_3056at 3654.475 kb on - strand, within Psyr_3056at 3654.475 kb on - strand, within Psyr_3056at 3654.475 kb on - strand, within Psyr_3056at 3654.475 kb on - strand, within Psyr_3056at 3654.475 kb on - strand, within Psyr_3056at 3654.475 kb on - strand, within Psyr_3056at 3654.475 kb on - strand, within Psyr_3056at 3654.475 kb on - strand, within Psyr_3056at 3654.636 kb on + strand, within Psyr_3056at 3654.636 kb on + strand, within Psyr_3056at 3654.636 kb on + strand, within Psyr_3056at 3654.636 kb on + strand, within Psyr_3056at 3654.637 kb on - strand, within Psyr_3056at 3654.637 kb on - strand, within Psyr_3056at 3654.637 kb on - strand, within Psyr_3056at 3654.637 kb on - strand, within Psyr_3056at 3654.637 kb on - strand, within Psyr_3056at 3654.770 kb on + strandat 3654.873 kb on + strand, within Psyr_3057at 3654.972 kb on - strand, within Psyr_3057at 3655.603 kb on + strandat 3655.604 kb on - strandat 3655.653 kb on + strandat 3655.653 kb on + strandat 3655.654 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
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3,652,716 + Psyr_3055 0.18 +0.7
3,652,855 - Psyr_3055 0.33 -0.3
3,653,328 + Psyr_3055 0.82 +2.3
3,653,329 - Psyr_3055 0.83 +2.3
3,653,487 + -0.3
3,653,488 - -0.3
3,653,488 - -3.0
3,653,731 - Psyr_3056 0.18 -1.6
3,653,731 - Psyr_3056 0.18 -0.3
3,653,944 + Psyr_3056 0.34 -1.8
3,654,100 - Psyr_3056 0.46 +0.7
3,654,473 - Psyr_3056 0.76 +3.5
3,654,474 + Psyr_3056 0.76 -3.0
3,654,474 + Psyr_3056 0.76 -0.3
3,654,474 + Psyr_3056 0.76 +3.0
3,654,474 + Psyr_3056 0.76 +0.7
3,654,474 + Psyr_3056 0.76 -1.3
3,654,474 + Psyr_3056 0.76 -0.3
3,654,474 + Psyr_3056 0.76 -0.7
3,654,474 + Psyr_3056 0.76 +3.2
3,654,474 + Psyr_3056 0.76 -2.7
3,654,475 - Psyr_3056 0.76 +3.6
3,654,475 - Psyr_3056 0.76 -1.9
3,654,475 - Psyr_3056 0.76 -4.2
3,654,475 - Psyr_3056 0.76 +1.3
3,654,475 - Psyr_3056 0.76 -0.6
3,654,475 - Psyr_3056 0.76 +2.3
3,654,475 - Psyr_3056 0.76 -2.9
3,654,475 - Psyr_3056 0.76 -0.3
3,654,636 + Psyr_3056 0.88 -1.4
3,654,636 + Psyr_3056 0.88 +0.7
3,654,636 + Psyr_3056 0.88 +3.3
3,654,636 + Psyr_3056 0.88 +3.5
3,654,637 - Psyr_3056 0.88 +2.5
3,654,637 - Psyr_3056 0.88 -2.1
3,654,637 - Psyr_3056 0.88 -3.8
3,654,637 - Psyr_3056 0.88 -0.3
3,654,637 - Psyr_3056 0.88 +0.7
3,654,770 + -1.6
3,654,873 + Psyr_3057 0.13 -0.3
3,654,972 - Psyr_3057 0.25 -1.1
3,655,603 + -0.7
3,655,604 - +2.0
3,655,653 + +1.3
3,655,653 + -0.3
3,655,654 - -1.5

Or see this region's nucleotide sequence