Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3033 and Psyr_3034 are separated by 879 nucleotides Psyr_3034 and Psyr_3035 overlap by 4 nucleotides
Psyr_3033: Psyr_3033 - conserved domain protein, at 3,631,486 to 3,632,364
_3033
Psyr_3034: Psyr_3034 - conserved hypothetical protein, at 3,633,244 to 3,633,555
_3034
Psyr_3035: Psyr_3035 - Glycoside hydrolase, family 3, N-terminal:Glycoside hydrolase, family 3, C-terminal:Glycoside hydrolase, family 3, C-terminal, at 3,633,552 to 3,636,293
_3035
Position (kb)
3633
3634 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3
4 at 3632.248 kb on + strand, within Psyr_3033 at 3632.248 kb on + strand, within Psyr_3033 at 3632.248 kb on + strand, within Psyr_3033 at 3632.335 kb on + strand at 3632.336 kb on - strand at 3632.338 kb on + strand at 3632.338 kb on + strand at 3632.338 kb on + strand at 3632.338 kb on + strand at 3632.339 kb on - strand at 3632.339 kb on - strand at 3632.363 kb on - strand at 3632.560 kb on - strand at 3632.580 kb on + strand at 3632.580 kb on + strand at 3632.580 kb on + strand at 3632.581 kb on - strand at 3632.581 kb on - strand at 3632.695 kb on + strand at 3632.695 kb on + strand at 3632.698 kb on + strand at 3632.698 kb on + strand at 3632.725 kb on - strand at 3632.730 kb on + strand at 3632.731 kb on - strand at 3632.912 kb on + strand at 3633.178 kb on + strand at 3633.184 kb on + strand at 3633.184 kb on + strand at 3633.185 kb on - strand at 3633.269 kb on + strand at 3633.306 kb on + strand, within Psyr_3034 at 3633.307 kb on - strand, within Psyr_3034 at 3633.307 kb on - strand, within Psyr_3034 at 3633.307 kb on - strand, within Psyr_3034 at 3633.335 kb on + strand, within Psyr_3034 at 3633.828 kb on + strand, within Psyr_3035 at 3634.017 kb on + strand, within Psyr_3035 at 3634.038 kb on + strand, within Psyr_3035 at 3634.210 kb on - strand, within Psyr_3035 at 3634.290 kb on + strand, within Psyr_3035 at 3634.290 kb on + strand, within Psyr_3035 at 3634.290 kb on + strand, within Psyr_3035 at 3634.290 kb on + strand, within Psyr_3035 at 3634.442 kb on + strand, within Psyr_3035 at 3634.539 kb on + strand, within Psyr_3035
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 3,632,248 + Psyr_3033 0.87 +0.8 3,632,248 + Psyr_3033 0.87 +3.5 3,632,248 + Psyr_3033 0.87 +2.8 3,632,335 + -0.5 3,632,336 - +0.6 3,632,338 + +3.6 3,632,338 + -2.3 3,632,338 + -3.5 3,632,338 + -0.8 3,632,339 - -2.3 3,632,339 - -0.3 3,632,363 - -0.3 3,632,560 - -3.0 3,632,580 + -3.6 3,632,580 + -2.6 3,632,580 + +0.1 3,632,581 - -1.6 3,632,581 - -0.3 3,632,695 + -2.8 3,632,695 + +2.7 3,632,698 + -2.3 3,632,698 + -3.8 3,632,725 - -0.6 3,632,730 + -4.4 3,632,731 - +2.3 3,632,912 + -2.1 3,633,178 + -2.0 3,633,184 + -0.4 3,633,184 + -1.9 3,633,185 - -3.1 3,633,269 + -1.2 3,633,306 + Psyr_3034 0.20 -3.9 3,633,307 - Psyr_3034 0.20 +3.9 3,633,307 - Psyr_3034 0.20 -4.1 3,633,307 - Psyr_3034 0.20 -5.3 3,633,335 + Psyr_3034 0.29 -2.8 3,633,828 + Psyr_3035 0.10 -2.3 3,634,017 + Psyr_3035 0.17 -1.3 3,634,038 + Psyr_3035 0.18 +1.3 3,634,210 - Psyr_3035 0.24 -0.3 3,634,290 + Psyr_3035 0.27 +0.7 3,634,290 + Psyr_3035 0.27 -0.3 3,634,290 + Psyr_3035 0.27 -4.0 3,634,290 + Psyr_3035 0.27 -4.6 3,634,442 + Psyr_3035 0.32 +2.0 3,634,539 + Psyr_3035 0.36 +2.5
Or see this region's nucleotide sequence