Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3034

Experiment: KB with Mitomycin C 0.625 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3033 and Psyr_3034 are separated by 879 nucleotidesPsyr_3034 and Psyr_3035 overlap by 4 nucleotides Psyr_3033: Psyr_3033 - conserved domain protein, at 3,631,486 to 3,632,364 _3033 Psyr_3034: Psyr_3034 - conserved hypothetical protein, at 3,633,244 to 3,633,555 _3034 Psyr_3035: Psyr_3035 - Glycoside hydrolase, family 3, N-terminal:Glycoside hydrolase, family 3, C-terminal:Glycoside hydrolase, family 3, C-terminal, at 3,633,552 to 3,636,293 _3035 Position (kb) 3633 3634Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 3632.248 kb on + strand, within Psyr_3033at 3632.248 kb on + strand, within Psyr_3033at 3632.248 kb on + strand, within Psyr_3033at 3632.335 kb on + strandat 3632.336 kb on - strandat 3632.338 kb on + strandat 3632.338 kb on + strandat 3632.338 kb on + strandat 3632.338 kb on + strandat 3632.339 kb on - strandat 3632.339 kb on - strandat 3632.363 kb on - strandat 3632.560 kb on - strandat 3632.580 kb on + strandat 3632.580 kb on + strandat 3632.580 kb on + strandat 3632.581 kb on - strandat 3632.581 kb on - strandat 3632.695 kb on + strandat 3632.695 kb on + strandat 3632.698 kb on + strandat 3632.698 kb on + strandat 3632.725 kb on - strandat 3632.730 kb on + strandat 3632.731 kb on - strandat 3632.912 kb on + strandat 3633.178 kb on + strandat 3633.184 kb on + strandat 3633.184 kb on + strandat 3633.185 kb on - strandat 3633.269 kb on + strandat 3633.306 kb on + strand, within Psyr_3034at 3633.307 kb on - strand, within Psyr_3034at 3633.307 kb on - strand, within Psyr_3034at 3633.307 kb on - strand, within Psyr_3034at 3633.335 kb on + strand, within Psyr_3034at 3633.828 kb on + strand, within Psyr_3035at 3634.017 kb on + strand, within Psyr_3035at 3634.038 kb on + strand, within Psyr_3035at 3634.210 kb on - strand, within Psyr_3035at 3634.290 kb on + strand, within Psyr_3035at 3634.290 kb on + strand, within Psyr_3035at 3634.290 kb on + strand, within Psyr_3035at 3634.290 kb on + strand, within Psyr_3035at 3634.442 kb on + strand, within Psyr_3035at 3634.539 kb on + strand, within Psyr_3035

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
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3,632,248 + Psyr_3033 0.87 +0.8
3,632,248 + Psyr_3033 0.87 +3.5
3,632,248 + Psyr_3033 0.87 +2.8
3,632,335 + -0.5
3,632,336 - +0.6
3,632,338 + +3.6
3,632,338 + -2.3
3,632,338 + -3.5
3,632,338 + -0.8
3,632,339 - -2.3
3,632,339 - -0.3
3,632,363 - -0.3
3,632,560 - -3.0
3,632,580 + -3.6
3,632,580 + -2.6
3,632,580 + +0.1
3,632,581 - -1.6
3,632,581 - -0.3
3,632,695 + -2.8
3,632,695 + +2.7
3,632,698 + -2.3
3,632,698 + -3.8
3,632,725 - -0.6
3,632,730 + -4.4
3,632,731 - +2.3
3,632,912 + -2.1
3,633,178 + -2.0
3,633,184 + -0.4
3,633,184 + -1.9
3,633,185 - -3.1
3,633,269 + -1.2
3,633,306 + Psyr_3034 0.20 -3.9
3,633,307 - Psyr_3034 0.20 +3.9
3,633,307 - Psyr_3034 0.20 -4.1
3,633,307 - Psyr_3034 0.20 -5.3
3,633,335 + Psyr_3034 0.29 -2.8
3,633,828 + Psyr_3035 0.10 -2.3
3,634,017 + Psyr_3035 0.17 -1.3
3,634,038 + Psyr_3035 0.18 +1.3
3,634,210 - Psyr_3035 0.24 -0.3
3,634,290 + Psyr_3035 0.27 +0.7
3,634,290 + Psyr_3035 0.27 -0.3
3,634,290 + Psyr_3035 0.27 -4.0
3,634,290 + Psyr_3035 0.27 -4.6
3,634,442 + Psyr_3035 0.32 +2.0
3,634,539 + Psyr_3035 0.36 +2.5

Or see this region's nucleotide sequence