Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3002 and Psyr_3003 are separated by 376 nucleotides Psyr_3003 and Psyr_3004 are separated by 74 nucleotides
Psyr_3002: Psyr_3002 - conserved hypothetical protein, at 3,597,756 to 3,598,796
_3002
Psyr_3003: Psyr_3003 - [Acyl-carrier protein] phosphodiesterase, at 3,599,173 to 3,599,781
_3003
Psyr_3004: Psyr_3004 - transcriptional regulator, LysR family, at 3,599,856 to 3,600,815
_3004
Position (kb)
3599
3600 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3
4
5
6
7
8
9
10 at 3598.232 kb on - strand, within Psyr_3002 at 3598.329 kb on + strand, within Psyr_3002 at 3598.329 kb on + strand, within Psyr_3002 at 3598.329 kb on + strand, within Psyr_3002 at 3598.329 kb on + strand, within Psyr_3002 at 3598.329 kb on + strand, within Psyr_3002 at 3598.330 kb on - strand, within Psyr_3002 at 3598.330 kb on - strand, within Psyr_3002 at 3598.330 kb on - strand, within Psyr_3002 at 3598.330 kb on - strand, within Psyr_3002 at 3598.400 kb on - strand, within Psyr_3002 at 3598.575 kb on - strand, within Psyr_3002 at 3598.791 kb on + strand at 3598.791 kb on + strand at 3598.791 kb on + strand at 3598.791 kb on + strand at 3598.792 kb on - strand at 3598.792 kb on - strand at 3598.792 kb on - strand at 3598.792 kb on - strand at 3598.894 kb on + strand at 3598.894 kb on + strand at 3598.894 kb on + strand at 3598.894 kb on + strand at 3598.894 kb on + strand at 3598.895 kb on - strand at 3598.895 kb on - strand at 3598.895 kb on - strand at 3598.915 kb on + strand at 3598.915 kb on + strand at 3598.915 kb on + strand at 3598.916 kb on - strand at 3598.966 kb on + strand at 3599.009 kb on + strand at 3599.010 kb on - strand at 3599.035 kb on + strand at 3599.055 kb on + strand at 3599.055 kb on + strand at 3599.148 kb on - strand at 3599.148 kb on - strand at 3599.201 kb on + strand at 3599.201 kb on + strand at 3599.201 kb on + strand at 3599.201 kb on + strand at 3599.201 kb on + strand at 3599.201 kb on + strand at 3599.202 kb on - strand at 3599.202 kb on - strand at 3599.202 kb on - strand at 3599.246 kb on + strand, within Psyr_3003 at 3599.247 kb on - strand, within Psyr_3003 at 3599.247 kb on - strand, within Psyr_3003 at 3599.329 kb on + strand, within Psyr_3003 at 3599.330 kb on - strand, within Psyr_3003 at 3599.495 kb on + strand, within Psyr_3003 at 3599.495 kb on + strand, within Psyr_3003 at 3599.495 kb on + strand, within Psyr_3003 at 3599.495 kb on + strand, within Psyr_3003 at 3599.495 kb on + strand, within Psyr_3003 at 3599.495 kb on + strand, within Psyr_3003 at 3599.495 kb on + strand, within Psyr_3003 at 3599.495 kb on + strand, within Psyr_3003 at 3599.496 kb on - strand, within Psyr_3003 at 3599.496 kb on - strand, within Psyr_3003 at 3599.496 kb on - strand, within Psyr_3003 at 3599.496 kb on - strand, within Psyr_3003 at 3599.496 kb on - strand, within Psyr_3003 at 3599.496 kb on - strand, within Psyr_3003 at 3599.699 kb on + strand, within Psyr_3003 at 3599.699 kb on + strand, within Psyr_3003 at 3599.699 kb on + strand, within Psyr_3003 at 3599.773 kb on + strand at 3599.773 kb on + strand at 3599.773 kb on + strand at 3599.773 kb on + strand at 3599.773 kb on + strand at 3599.773 kb on + strand at 3599.774 kb on - strand at 3599.774 kb on - strand at 3599.774 kb on - strand at 3599.774 kb on - strand at 3599.774 kb on - strand at 3599.774 kb on - strand at 3599.781 kb on + strand at 3599.786 kb on + strand at 3599.786 kb on + strand at 3599.786 kb on + strand at 3599.786 kb on + strand at 3599.787 kb on - strand at 3599.787 kb on - strand at 3599.787 kb on - strand at 3599.787 kb on - strand at 3599.850 kb on - strand at 3599.900 kb on - strand at 3600.171 kb on + strand, within Psyr_3004 at 3600.172 kb on - strand, within Psyr_3004 at 3600.435 kb on - strand, within Psyr_3004 at 3600.619 kb on + strand, within Psyr_3004 at 3600.619 kb on + strand, within Psyr_3004 at 3600.622 kb on + strand, within Psyr_3004 at 3600.622 kb on + strand, within Psyr_3004 at 3600.622 kb on + strand, within Psyr_3004
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 3,598,232 - Psyr_3002 0.46 +0.9 3,598,329 + Psyr_3002 0.55 -1.3 3,598,329 + Psyr_3002 0.55 +3.9 3,598,329 + Psyr_3002 0.55 -2.3 3,598,329 + Psyr_3002 0.55 -3.6 3,598,329 + Psyr_3002 0.55 +3.0 3,598,330 - Psyr_3002 0.55 -2.8 3,598,330 - Psyr_3002 0.55 +4.5 3,598,330 - Psyr_3002 0.55 -1.6 3,598,330 - Psyr_3002 0.55 -2.8 3,598,400 - Psyr_3002 0.62 -0.3 3,598,575 - Psyr_3002 0.79 -2.7 3,598,791 + -0.3 3,598,791 + -3.9 3,598,791 + -5.4 3,598,791 + -3.9 3,598,792 - -1.2 3,598,792 - +0.7 3,598,792 - +2.5 3,598,792 - +3.7 3,598,894 + -3.1 3,598,894 + +2.2 3,598,894 + -2.9 3,598,894 + -2.0 3,598,894 + -4.2 3,598,895 - -0.1 3,598,895 - -2.2 3,598,895 - +3.2 3,598,915 + -0.3 3,598,915 + +2.5 3,598,915 + -2.9 3,598,916 - +1.2 3,598,966 + -1.7 3,599,009 + +2.5 3,599,010 - +2.2 3,599,035 + +1.2 3,599,055 + -2.8 3,599,055 + -1.1 3,599,148 - +2.0 3,599,148 - -1.3 3,599,201 + +10.6 3,599,201 + +5.7 3,599,201 + +10.1 3,599,201 + +5.5 3,599,201 + +6.2 3,599,201 + +3.4 3,599,202 - +6.7 3,599,202 - +8.6 3,599,202 - +6.0 3,599,246 + Psyr_3003 0.12 +9.3 3,599,247 - Psyr_3003 0.12 +10.1 3,599,247 - Psyr_3003 0.12 +9.1 3,599,329 + Psyr_3003 0.26 +8.7 3,599,330 - Psyr_3003 0.26 +2.8 3,599,495 + Psyr_3003 0.53 +10.0 3,599,495 + Psyr_3003 0.53 +5.2 3,599,495 + Psyr_3003 0.53 +9.2 3,599,495 + Psyr_3003 0.53 +5.2 3,599,495 + Psyr_3003 0.53 +4.3 3,599,495 + Psyr_3003 0.53 +6.6 3,599,495 + Psyr_3003 0.53 +8.2 3,599,495 + Psyr_3003 0.53 +10.1 3,599,496 - Psyr_3003 0.53 +5.6 3,599,496 - Psyr_3003 0.53 +10.4 3,599,496 - Psyr_3003 0.53 +8.7 3,599,496 - Psyr_3003 0.53 +4.9 3,599,496 - Psyr_3003 0.53 +10.2 3,599,496 - Psyr_3003 0.53 +9.4 3,599,699 + Psyr_3003 0.86 +4.8 3,599,699 + Psyr_3003 0.86 +5.0 3,599,699 + Psyr_3003 0.86 +8.2 3,599,773 + +7.0 3,599,773 + +1.8 3,599,773 + +2.2 3,599,773 + +6.9 3,599,773 + +8.5 3,599,773 + +3.9 3,599,774 - +5.3 3,599,774 - +2.1 3,599,774 - +6.6 3,599,774 - +10.0 3,599,774 - +6.5 3,599,774 - +2.6 3,599,781 + +5.5 3,599,786 + +7.4 3,599,786 + +4.0 3,599,786 + +5.5 3,599,786 + +3.2 3,599,787 - +0.7 3,599,787 - -1.8 3,599,787 - -1.1 3,599,787 - -0.6 3,599,850 - -1.5 3,599,900 - -1.8 3,600,171 + Psyr_3004 0.33 +3.2 3,600,172 - Psyr_3004 0.33 +0.6 3,600,435 - Psyr_3004 0.60 -1.5 3,600,619 + Psyr_3004 0.79 -1.4 3,600,619 + Psyr_3004 0.79 -5.5 3,600,622 + Psyr_3004 0.80 -0.2 3,600,622 + Psyr_3004 0.80 -1.4 3,600,622 + Psyr_3004 0.80 -0.2
Or see this region's nucleotide sequence