Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2846

Experiment: KB with Mitomycin C 0.625 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2845 and Psyr_2846 are separated by 296 nucleotidesPsyr_2846 and Psyr_2847 are separated by 329 nucleotidesPsyr_2847 and Psyr_2848 are separated by 132 nucleotides Psyr_2845: Psyr_2845 - hypothetical protein, at 3,418,796 to 3,419,257 _2845 Psyr_2846: Psyr_2846 - Phage integrase:Phage integrase, N-terminal SAM-like protein, at 3,419,554 to 3,420,588 _2846 Psyr_2847: Psyr_2847 - hypothetical protein, at 3,420,918 to 3,421,364 _2847 Psyr_2848: Psyr_2848 - hypothetical protein, at 3,421,497 to 3,421,922 _2848 Position (kb) 3419 3420 3421Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4 5at 3418.591 kb on + strandat 3418.591 kb on + strandat 3418.591 kb on + strandat 3418.591 kb on + strandat 3418.591 kb on + strandat 3418.591 kb on + strandat 3418.591 kb on + strandat 3418.591 kb on + strandat 3418.591 kb on + strandat 3418.591 kb on + strandat 3418.592 kb on - strandat 3418.592 kb on - strandat 3418.592 kb on - strandat 3418.592 kb on - strandat 3418.592 kb on - strandat 3418.592 kb on - strandat 3418.592 kb on - strandat 3418.592 kb on - strandat 3418.592 kb on - strandat 3418.592 kb on - strandat 3418.592 kb on - strandat 3418.631 kb on + strandat 3418.631 kb on + strandat 3418.631 kb on + strandat 3418.827 kb on - strandat 3419.333 kb on + strandat 3419.333 kb on + strandat 3419.333 kb on + strandat 3419.337 kb on + strandat 3419.337 kb on + strandat 3419.337 kb on + strandat 3419.372 kb on + strandat 3419.372 kb on + strandat 3419.372 kb on + strandat 3419.372 kb on + strandat 3419.373 kb on - strandat 3419.373 kb on - strandat 3419.373 kb on - strandat 3419.373 kb on - strandat 3419.412 kb on - strandat 3419.412 kb on - strandat 3419.626 kb on + strandat 3419.626 kb on + strandat 3419.626 kb on + strandat 3419.629 kb on + strandat 3419.629 kb on + strandat 3419.629 kb on + strandat 3419.629 kb on + strandat 3419.629 kb on + strandat 3419.629 kb on + strandat 3419.632 kb on + strandat 3419.632 kb on + strandat 3419.632 kb on + strandat 3419.632 kb on + strandat 3419.635 kb on + strandat 3419.635 kb on + strandat 3419.635 kb on + strandat 3419.635 kb on + strandat 3419.635 kb on + strandat 3419.635 kb on + strandat 3419.635 kb on + strandat 3419.684 kb on - strand, within Psyr_2846at 3419.767 kb on + strand, within Psyr_2846at 3419.767 kb on + strand, within Psyr_2846at 3419.767 kb on + strand, within Psyr_2846at 3419.783 kb on - strand, within Psyr_2846at 3419.783 kb on - strand, within Psyr_2846at 3419.783 kb on - strand, within Psyr_2846at 3419.783 kb on - strand, within Psyr_2846at 3419.783 kb on - strand, within Psyr_2846at 3419.783 kb on - strand, within Psyr_2846at 3419.783 kb on - strand, within Psyr_2846at 3419.783 kb on - strand, within Psyr_2846at 3419.783 kb on - strand, within Psyr_2846at 3419.948 kb on + strand, within Psyr_2846at 3419.948 kb on + strand, within Psyr_2846at 3419.982 kb on + strand, within Psyr_2846at 3419.983 kb on - strand, within Psyr_2846at 3419.983 kb on - strand, within Psyr_2846at 3420.073 kb on + strand, within Psyr_2846at 3420.073 kb on + strand, within Psyr_2846at 3420.073 kb on + strand, within Psyr_2846at 3420.073 kb on + strand, within Psyr_2846at 3420.073 kb on + strand, within Psyr_2846at 3420.073 kb on + strand, within Psyr_2846at 3420.073 kb on + strand, within Psyr_2846at 3420.074 kb on - strand, within Psyr_2846at 3420.074 kb on - strand, within Psyr_2846at 3420.074 kb on - strand, within Psyr_2846at 3420.074 kb on - strand, within Psyr_2846at 3420.074 kb on - strand, within Psyr_2846at 3420.074 kb on - strand, within Psyr_2846at 3420.074 kb on - strand, within Psyr_2846at 3420.074 kb on - strand, within Psyr_2846at 3420.103 kb on + strand, within Psyr_2846at 3420.103 kb on + strand, within Psyr_2846at 3420.143 kb on + strand, within Psyr_2846at 3420.143 kb on + strand, within Psyr_2846at 3420.143 kb on + strand, within Psyr_2846at 3420.143 kb on + strand, within Psyr_2846at 3420.143 kb on + strand, within Psyr_2846at 3420.144 kb on - strand, within Psyr_2846at 3420.144 kb on - strand, within Psyr_2846at 3420.144 kb on - strand, within Psyr_2846at 3420.144 kb on - strand, within Psyr_2846at 3420.144 kb on - strand, within Psyr_2846at 3420.148 kb on + strand, within Psyr_2846at 3420.148 kb on + strand, within Psyr_2846at 3420.148 kb on + strand, within Psyr_2846at 3420.148 kb on + strand, within Psyr_2846at 3420.148 kb on + strand, within Psyr_2846at 3420.149 kb on - strand, within Psyr_2846at 3420.201 kb on - strand, within Psyr_2846at 3420.201 kb on - strand, within Psyr_2846at 3420.201 kb on - strandat 3420.373 kb on - strand, within Psyr_2846at 3420.373 kb on - strand, within Psyr_2846at 3420.373 kb on - strand, within Psyr_2846at 3420.373 kb on - strand, within Psyr_2846at 3420.765 kb on + strandat 3420.765 kb on + strandat 3420.765 kb on + strandat 3420.765 kb on + strandat 3420.765 kb on + strandat 3420.765 kb on + strandat 3420.765 kb on + strandat 3420.765 kb on + strandat 3420.765 kb on + strandat 3420.765 kb on + strandat 3420.765 kb on + strandat 3420.765 kb on + strandat 3420.765 kb on + strandat 3420.765 kb on + strandat 3420.765 kb on + strandat 3420.765 kb on + strandat 3420.765 kb on + strandat 3420.765 kb on + strandat 3420.766 kb on - strandat 3420.766 kb on - strandat 3420.766 kb on - strandat 3420.766 kb on - strandat 3420.766 kb on - strandat 3420.766 kb on - strandat 3420.766 kb on - strandat 3420.766 kb on - strandat 3420.766 kb on - strandat 3420.766 kb on - strandat 3420.766 kb on - strandat 3420.766 kb on - strandat 3420.766 kb on - strandat 3420.766 kb on - strandat 3420.767 kb on + strandat 3420.767 kb on + strandat 3420.767 kb on + strandat 3420.767 kb on + strandat 3420.767 kb on + strandat 3420.767 kb on + strandat 3420.767 kb on + strandat 3420.767 kb on + strandat 3420.767 kb on + strandat 3420.767 kb on + strandat 3420.767 kb on + strandat 3420.767 kb on + strandat 3420.767 kb on + strandat 3420.767 kb on + strandat 3420.768 kb on - strandat 3420.768 kb on - strandat 3420.768 kb on - strandat 3420.768 kb on - strandat 3420.768 kb on - strandat 3420.768 kb on - strandat 3420.768 kb on - strandat 3420.768 kb on - strandat 3420.768 kb on - strandat 3420.768 kb on - strandat 3420.768 kb on - strandat 3420.768 kb on - strandat 3420.768 kb on - strandat 3420.768 kb on - strandat 3420.768 kb on - strandat 3420.768 kb on - strandat 3420.768 kb on - strandat 3420.768 kb on - strandat 3420.768 kb on - strandat 3420.769 kb on + strandat 3420.769 kb on + strandat 3420.769 kb on + strandat 3420.769 kb on + strandat 3420.769 kb on + strandat 3420.769 kb on + strandat 3420.770 kb on - strandat 3420.770 kb on - strandat 3420.770 kb on - strandat 3420.770 kb on - strandat 3420.770 kb on - strandat 3421.001 kb on + strand, within Psyr_2847at 3421.132 kb on - strand, within Psyr_2847at 3421.205 kb on - strand, within Psyr_2847at 3421.280 kb on + strand, within Psyr_2847at 3421.281 kb on - strand, within Psyr_2847at 3421.323 kb on + strandat 3421.323 kb on + strandat 3421.323 kb on + strandat 3421.324 kb on - strandat 3421.324 kb on - strandat 3421.397 kb on + strandat 3421.397 kb on + strandat 3421.397 kb on + strandat 3421.397 kb on + strandat 3421.398 kb on - strandat 3421.398 kb on - strandat 3421.398 kb on - strandat 3421.398 kb on - strandat 3421.398 kb on - strandat 3421.398 kb on - strandat 3421.408 kb on + strandat 3421.408 kb on + strandat 3421.409 kb on - strandat 3421.409 kb on - strandat 3421.409 kb on - strandat 3421.410 kb on + strandat 3421.410 kb on + strandat 3421.411 kb on - strandat 3421.411 kb on - strandat 3421.411 kb on - strandat 3421.411 kb on - strandat 3421.411 kb on - strandat 3421.411 kb on - strandat 3421.418 kb on - strandat 3421.418 kb on - strandat 3421.433 kb on + strandat 3421.434 kb on - strandat 3421.438 kb on + strandat 3421.442 kb on + strandat 3421.443 kb on - strandat 3421.469 kb on + strandat 3421.469 kb on + strandat 3421.469 kb on + strandat 3421.470 kb on - strandat 3421.470 kb on - strandat 3421.533 kb on + strandat 3421.557 kb on + strand, within Psyr_2848at 3421.558 kb on - strand, within Psyr_2848at 3421.558 kb on - strand, within Psyr_2848

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
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3,418,591 + +3.4
3,418,591 + -1.0
3,418,591 + +1.3
3,418,591 + +0.6
3,418,591 + +3.5
3,418,591 + +1.1
3,418,591 + +0.2
3,418,591 + +1.1
3,418,591 + +1.2
3,418,591 + +0.5
3,418,592 - +3.6
3,418,592 - +5.2
3,418,592 - +2.2
3,418,592 - +2.5
3,418,592 - -1.1
3,418,592 - +0.8
3,418,592 - -2.5
3,418,592 - +4.7
3,418,592 - -0.3
3,418,592 - +0.6
3,418,592 - -0.7
3,418,631 + +4.8
3,418,631 + -0.6
3,418,631 + +0.4
3,418,827 - +3.2
3,419,333 + +0.3
3,419,333 + +4.9
3,419,333 + -0.4
3,419,337 + +3.3
3,419,337 + +0.3
3,419,337 + +0.8
3,419,372 + +0.3
3,419,372 + +2.8
3,419,372 + +0.2
3,419,372 + +2.5
3,419,373 - +0.3
3,419,373 - -0.2
3,419,373 - +2.7
3,419,373 - -0.5
3,419,412 - -0.2
3,419,412 - +3.0
3,419,626 + +2.4
3,419,626 + +3.8
3,419,626 + +2.4
3,419,629 + +0.8
3,419,629 + -0.1
3,419,629 + +0.5
3,419,629 + +5.0
3,419,629 + +0.0
3,419,629 + +4.1
3,419,632 + +4.5
3,419,632 + -0.8
3,419,632 + -1.9
3,419,632 + +0.2
3,419,635 + +0.2
3,419,635 + +2.9
3,419,635 + +3.5
3,419,635 + +4.7
3,419,635 + +0.8
3,419,635 + +0.4
3,419,635 + +3.9
3,419,684 - Psyr_2846 0.13 +2.5
3,419,767 + Psyr_2846 0.21 -0.3
3,419,767 + Psyr_2846 0.21 +5.0
3,419,767 + Psyr_2846 0.21 +4.4
3,419,783 - Psyr_2846 0.22 +0.8
3,419,783 - Psyr_2846 0.22 -0.1
3,419,783 - Psyr_2846 0.22 +2.8
3,419,783 - Psyr_2846 0.22 -0.9
3,419,783 - Psyr_2846 0.22 +2.2
3,419,783 - Psyr_2846 0.22 +3.5
3,419,783 - Psyr_2846 0.22 -0.7
3,419,783 - Psyr_2846 0.22 -1.3
3,419,783 - Psyr_2846 0.22 +2.7
3,419,948 + Psyr_2846 0.38 +3.3
3,419,948 + Psyr_2846 0.38 +0.1
3,419,982 + Psyr_2846 0.41 +3.7
3,419,983 - Psyr_2846 0.41 -0.3
3,419,983 - Psyr_2846 0.41 +1.4
3,420,073 + Psyr_2846 0.50 +4.9
3,420,073 + Psyr_2846 0.50 -0.9
3,420,073 + Psyr_2846 0.50 -1.3
3,420,073 + Psyr_2846 0.50 +1.1
3,420,073 + Psyr_2846 0.50 +1.2
3,420,073 + Psyr_2846 0.50 +2.5
3,420,073 + Psyr_2846 0.50 +1.6
3,420,074 - Psyr_2846 0.50 -3.0
3,420,074 - Psyr_2846 0.50 -0.8
3,420,074 - Psyr_2846 0.50 -3.2
3,420,074 - Psyr_2846 0.50 -0.0
3,420,074 - Psyr_2846 0.50 -1.2
3,420,074 - Psyr_2846 0.50 +2.5
3,420,074 - Psyr_2846 0.50 +0.2
3,420,074 - Psyr_2846 0.50 +3.4
3,420,103 + Psyr_2846 0.53 +3.9
3,420,103 + Psyr_2846 0.53 +1.7
3,420,143 + Psyr_2846 0.57 -0.1
3,420,143 + Psyr_2846 0.57 +2.5
3,420,143 + Psyr_2846 0.57 +0.2
3,420,143 + Psyr_2846 0.57 -0.4
3,420,143 + Psyr_2846 0.57 +3.5
3,420,144 - Psyr_2846 0.57 +2.7
3,420,144 - Psyr_2846 0.57 +1.3
3,420,144 - Psyr_2846 0.57 +2.9
3,420,144 - Psyr_2846 0.57 -1.0
3,420,144 - Psyr_2846 0.57 +1.8
3,420,148 + Psyr_2846 0.57 +3.9
3,420,148 + Psyr_2846 0.57 +3.2
3,420,148 + Psyr_2846 0.57 +2.0
3,420,148 + Psyr_2846 0.57 +5.0
3,420,148 + Psyr_2846 0.57 +0.9
3,420,149 - Psyr_2846 0.57 -1.4
3,420,201 - Psyr_2846 0.63 -0.3
3,420,201 - Psyr_2846 0.63 +1.8
3,420,201 - -2.8
3,420,373 - Psyr_2846 0.79 +2.8
3,420,373 - Psyr_2846 0.79 -1.3
3,420,373 - Psyr_2846 0.79 +1.2
3,420,373 - Psyr_2846 0.79 +2.0
3,420,765 + -0.3
3,420,765 + -1.1
3,420,765 + +3.4
3,420,765 + +3.6
3,420,765 + +2.4
3,420,765 + +0.7
3,420,765 + +1.5
3,420,765 + -0.8
3,420,765 + +2.5
3,420,765 + +1.8
3,420,765 + -0.4
3,420,765 + +4.1
3,420,765 + -1.0
3,420,765 + +3.4
3,420,765 + -2.0
3,420,765 + -0.8
3,420,765 + +3.1
3,420,765 + +1.5
3,420,766 - +0.3
3,420,766 - -0.8
3,420,766 - +2.9
3,420,766 - +3.4
3,420,766 - +4.3
3,420,766 - -2.1
3,420,766 - -0.7
3,420,766 - -0.6
3,420,766 - +0.1
3,420,766 - +0.2
3,420,766 - +0.1
3,420,766 - -0.5
3,420,766 - +1.3
3,420,766 - -1.6
3,420,767 + -1.0
3,420,767 + +0.7
3,420,767 + +2.8
3,420,767 + +4.8
3,420,767 + -1.4
3,420,767 + +3.9
3,420,767 + +2.8
3,420,767 + -3.1
3,420,767 + +2.5
3,420,767 + -2.6
3,420,767 + -1.4
3,420,767 + +0.5
3,420,767 + -2.4
3,420,767 + +0.1
3,420,768 - -1.8
3,420,768 - +1.5
3,420,768 - -2.3
3,420,768 - +4.4
3,420,768 - -0.4
3,420,768 - +2.0
3,420,768 - -3.0
3,420,768 - +2.5
3,420,768 - -0.8
3,420,768 - +3.1
3,420,768 - +0.1
3,420,768 - +1.5
3,420,768 - -1.7
3,420,768 - +0.1
3,420,768 - +0.2
3,420,768 - -0.8
3,420,768 - +3.7
3,420,768 - -0.3
3,420,768 - +4.3
3,420,769 + -2.8
3,420,769 + -0.9
3,420,769 + -1.7
3,420,769 + -0.8
3,420,769 + -1.8
3,420,769 + -3.3
3,420,770 - +2.6
3,420,770 - +3.6
3,420,770 - -1.5
3,420,770 - +3.4
3,420,770 - -0.8
3,421,001 + Psyr_2847 0.19 +2.6
3,421,132 - Psyr_2847 0.48 -1.5
3,421,205 - Psyr_2847 0.64 -5.1
3,421,280 + Psyr_2847 0.81 -0.8
3,421,281 - Psyr_2847 0.81 +2.2
3,421,323 + +0.2
3,421,323 + -3.3
3,421,323 + -3.1
3,421,324 - -0.8
3,421,324 - +2.6
3,421,397 + -0.8
3,421,397 + -0.8
3,421,397 + -0.8
3,421,397 + -1.2
3,421,398 - +3.4
3,421,398 - +2.6
3,421,398 - +0.1
3,421,398 - -2.7
3,421,398 - +2.8
3,421,398 - +1.2
3,421,408 + -0.8
3,421,408 + -0.8
3,421,409 - -5.1
3,421,409 - -1.0
3,421,409 - +2.9
3,421,410 + +1.2
3,421,410 + -2.0
3,421,411 - -0.1
3,421,411 - -0.8
3,421,411 - +1.2
3,421,411 - +1.6
3,421,411 - +2.8
3,421,411 - +2.8
3,421,418 - +0.0
3,421,418 - +0.8
3,421,433 + -2.8
3,421,434 - -0.8
3,421,438 + -0.8
3,421,442 + -2.8
3,421,443 - -3.4
3,421,469 + -1.8
3,421,469 + -3.5
3,421,469 + -0.8
3,421,470 - -2.7
3,421,470 - -0.8
3,421,533 + -0.8
3,421,557 + Psyr_2848 0.14 +1.2
3,421,558 - Psyr_2848 0.14 -4.1
3,421,558 - Psyr_2848 0.14 -4.5

Or see this region's nucleotide sequence