Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2834

Experiment: KB with Mitomycin C 0.625 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2833 and Psyr_2834 are separated by 226 nucleotidesPsyr_2834 and Psyr_2835 are separated by 38 nucleotidesPsyr_2835 and Psyr_2836 overlap by 1 nucleotides Psyr_2833: Psyr_2833 - CDS, at 3,407,814 to 3,408,833 _2833 Psyr_2834: Psyr_2834 - hypothetical protein, at 3,409,060 to 3,409,506 _2834 Psyr_2835: Psyr_2835 - hypothetical protein, at 3,409,545 to 3,410,135 _2835 Psyr_2836: Psyr_2836 - hypothetical protein, at 3,410,135 to 3,410,761 _2836 Position (kb) 3409 3410Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6at 3408.479 kb on + strand, within Psyr_2833at 3408.479 kb on + strand, within Psyr_2833at 3408.479 kb on + strand, within Psyr_2833at 3408.712 kb on - strand, within Psyr_2833at 3408.938 kb on + strandat 3408.939 kb on - strandat 3408.939 kb on - strandat 3408.940 kb on + strandat 3408.941 kb on - strandat 3408.941 kb on - strandat 3409.014 kb on + strandat 3409.014 kb on + strandat 3409.014 kb on + strandat 3409.015 kb on - strandat 3409.015 kb on - strandat 3409.043 kb on - strandat 3409.047 kb on - strandat 3409.047 kb on - strandat 3409.049 kb on + strandat 3409.049 kb on + strandat 3409.050 kb on - strandat 3409.053 kb on + strandat 3409.072 kb on + strandat 3409.073 kb on - strandat 3409.200 kb on - strand, within Psyr_2834at 3409.200 kb on - strand, within Psyr_2834at 3409.207 kb on - strand, within Psyr_2834at 3409.207 kb on - strand, within Psyr_2834at 3409.207 kb on - strand, within Psyr_2834at 3409.207 kb on - strand, within Psyr_2834at 3409.216 kb on + strand, within Psyr_2834at 3409.217 kb on - strand, within Psyr_2834at 3409.226 kb on + strand, within Psyr_2834at 3409.226 kb on + strand, within Psyr_2834at 3409.226 kb on + strand, within Psyr_2834at 3409.226 kb on + strand, within Psyr_2834at 3409.226 kb on + strand, within Psyr_2834at 3409.226 kb on + strand, within Psyr_2834at 3409.226 kb on + strand, within Psyr_2834at 3409.226 kb on + strand, within Psyr_2834at 3409.226 kb on + strand, within Psyr_2834at 3409.226 kb on + strand, within Psyr_2834at 3409.227 kb on - strand, within Psyr_2834at 3409.227 kb on - strand, within Psyr_2834at 3409.227 kb on - strand, within Psyr_2834at 3409.227 kb on - strand, within Psyr_2834at 3409.227 kb on - strand, within Psyr_2834at 3409.227 kb on - strand, within Psyr_2834at 3409.227 kb on - strand, within Psyr_2834at 3409.227 kb on - strand, within Psyr_2834at 3409.227 kb on - strand, within Psyr_2834at 3409.227 kb on - strand, within Psyr_2834at 3409.230 kb on + strand, within Psyr_2834at 3409.230 kb on + strand, within Psyr_2834at 3409.231 kb on - strand, within Psyr_2834at 3409.271 kb on + strand, within Psyr_2834at 3409.303 kb on + strand, within Psyr_2834at 3409.311 kb on + strand, within Psyr_2834at 3409.311 kb on + strand, within Psyr_2834at 3409.311 kb on + strand, within Psyr_2834at 3409.312 kb on - strand, within Psyr_2834at 3409.376 kb on + strand, within Psyr_2834at 3409.433 kb on + strand, within Psyr_2834at 3409.433 kb on + strand, within Psyr_2834at 3409.467 kb on + strandat 3409.468 kb on - strandat 3409.502 kb on + strandat 3409.503 kb on - strandat 3409.504 kb on + strandat 3409.577 kb on - strandat 3409.580 kb on - strandat 3409.585 kb on + strandat 3409.586 kb on - strandat 3409.634 kb on + strand, within Psyr_2835at 3409.634 kb on + strand, within Psyr_2835at 3409.634 kb on + strand, within Psyr_2835at 3409.634 kb on + strand, within Psyr_2835at 3409.634 kb on + strand, within Psyr_2835at 3409.634 kb on + strand, within Psyr_2835at 3409.634 kb on + strand, within Psyr_2835at 3409.634 kb on + strand, within Psyr_2835at 3409.634 kb on + strand, within Psyr_2835at 3409.635 kb on - strand, within Psyr_2835at 3409.635 kb on - strand, within Psyr_2835at 3409.635 kb on - strand, within Psyr_2835at 3409.635 kb on - strand, within Psyr_2835at 3409.635 kb on - strand, within Psyr_2835at 3409.749 kb on + strand, within Psyr_2835at 3409.750 kb on - strand, within Psyr_2835at 3409.750 kb on - strand, within Psyr_2835at 3409.750 kb on - strand, within Psyr_2835at 3409.978 kb on + strand, within Psyr_2835at 3409.978 kb on + strand, within Psyr_2835at 3409.978 kb on + strand, within Psyr_2835at 3409.978 kb on + strand, within Psyr_2835at 3409.978 kb on + strand, within Psyr_2835at 3409.978 kb on + strand, within Psyr_2835at 3409.978 kb on + strand, within Psyr_2835at 3409.978 kb on + strand, within Psyr_2835at 3409.978 kb on + strand, within Psyr_2835at 3409.978 kb on + strand, within Psyr_2835at 3409.979 kb on - strand, within Psyr_2835at 3409.979 kb on - strand, within Psyr_2835at 3409.979 kb on - strand, within Psyr_2835at 3409.979 kb on - strand, within Psyr_2835at 3409.979 kb on - strand, within Psyr_2835at 3409.979 kb on - strand, within Psyr_2835at 3409.979 kb on - strand, within Psyr_2835at 3409.979 kb on - strand, within Psyr_2835at 3409.979 kb on - strand, within Psyr_2835at 3409.979 kb on - strand, within Psyr_2835at 3410.044 kb on + strand, within Psyr_2835at 3410.044 kb on + strand, within Psyr_2835at 3410.045 kb on - strand, within Psyr_2835at 3410.122 kb on - strandat 3410.471 kb on + strand, within Psyr_2836at 3410.471 kb on + strand, within Psyr_2836at 3410.471 kb on + strand, within Psyr_2836at 3410.471 kb on + strand, within Psyr_2836at 3410.471 kb on + strand, within Psyr_2836at 3410.472 kb on - strand, within Psyr_2836at 3410.472 kb on - strand, within Psyr_2836at 3410.472 kb on - strand, within Psyr_2836

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
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3,408,479 + Psyr_2833 0.65 +1.5
3,408,479 + Psyr_2833 0.65 +1.1
3,408,479 + Psyr_2833 0.65 -1.7
3,408,712 - Psyr_2833 0.88 +5.2
3,408,938 + +0.2
3,408,939 - +1.6
3,408,939 - +3.7
3,408,940 + -0.7
3,408,941 - +0.3
3,408,941 - +3.0
3,409,014 + +0.2
3,409,014 + +4.6
3,409,014 + -0.2
3,409,015 - +3.7
3,409,015 - -0.2
3,409,043 - +5.8
3,409,047 - +0.4
3,409,047 - +1.1
3,409,049 + +5.2
3,409,049 + +5.5
3,409,050 - -0.0
3,409,053 + +4.5
3,409,072 + +4.5
3,409,073 - +2.2
3,409,200 - Psyr_2834 0.31 +3.9
3,409,200 - Psyr_2834 0.31 +0.7
3,409,207 - Psyr_2834 0.33 +2.4
3,409,207 - Psyr_2834 0.33 +2.5
3,409,207 - Psyr_2834 0.33 +2.5
3,409,207 - Psyr_2834 0.33 -1.2
3,409,216 + Psyr_2834 0.35 +2.2
3,409,217 - Psyr_2834 0.35 +1.7
3,409,226 + Psyr_2834 0.37 +3.7
3,409,226 + Psyr_2834 0.37 +0.1
3,409,226 + Psyr_2834 0.37 -0.7
3,409,226 + Psyr_2834 0.37 +5.7
3,409,226 + Psyr_2834 0.37 +4.7
3,409,226 + Psyr_2834 0.37 +1.2
3,409,226 + Psyr_2834 0.37 +0.8
3,409,226 + Psyr_2834 0.37 -0.2
3,409,226 + Psyr_2834 0.37 +1.1
3,409,226 + Psyr_2834 0.37 +4.3
3,409,227 - Psyr_2834 0.37 +3.4
3,409,227 - Psyr_2834 0.37 +2.2
3,409,227 - Psyr_2834 0.37 +1.7
3,409,227 - Psyr_2834 0.37 +2.2
3,409,227 - Psyr_2834 0.37 -1.0
3,409,227 - Psyr_2834 0.37 +4.5
3,409,227 - Psyr_2834 0.37 +1.8
3,409,227 - Psyr_2834 0.37 +1.9
3,409,227 - Psyr_2834 0.37 -0.8
3,409,227 - Psyr_2834 0.37 +2.7
3,409,230 + Psyr_2834 0.38 -0.9
3,409,230 + Psyr_2834 0.38 +1.9
3,409,231 - Psyr_2834 0.38 +2.7
3,409,271 + Psyr_2834 0.47 +5.3
3,409,303 + Psyr_2834 0.54 +3.4
3,409,311 + Psyr_2834 0.56 +4.6
3,409,311 + Psyr_2834 0.56 +5.6
3,409,311 + Psyr_2834 0.56 +3.6
3,409,312 - Psyr_2834 0.56 +4.0
3,409,376 + Psyr_2834 0.71 +0.9
3,409,433 + Psyr_2834 0.83 +4.4
3,409,433 + Psyr_2834 0.83 +2.4
3,409,467 + -0.1
3,409,468 - +1.5
3,409,502 + +1.0
3,409,503 - +0.2
3,409,504 + +1.2
3,409,577 - +1.0
3,409,580 - +0.6
3,409,585 + +5.2
3,409,586 - +5.5
3,409,634 + Psyr_2835 0.15 +5.7
3,409,634 + Psyr_2835 0.15 +3.5
3,409,634 + Psyr_2835 0.15 +0.0
3,409,634 + Psyr_2835 0.15 +4.3
3,409,634 + Psyr_2835 0.15 +1.4
3,409,634 + Psyr_2835 0.15 +0.0
3,409,634 + Psyr_2835 0.15 +1.1
3,409,634 + Psyr_2835 0.15 +5.5
3,409,634 + Psyr_2835 0.15 +3.3
3,409,635 - Psyr_2835 0.15 +3.3
3,409,635 - Psyr_2835 0.15 +3.5
3,409,635 - Psyr_2835 0.15 +0.2
3,409,635 - Psyr_2835 0.15 +2.0
3,409,635 - Psyr_2835 0.15 +3.5
3,409,749 + Psyr_2835 0.35 +1.2
3,409,750 - Psyr_2835 0.35 -0.8
3,409,750 - Psyr_2835 0.35 +5.0
3,409,750 - Psyr_2835 0.35 +6.0
3,409,978 + Psyr_2835 0.73 +3.1
3,409,978 + Psyr_2835 0.73 +4.3
3,409,978 + Psyr_2835 0.73 +2.0
3,409,978 + Psyr_2835 0.73 +2.8
3,409,978 + Psyr_2835 0.73 +5.2
3,409,978 + Psyr_2835 0.73 -0.5
3,409,978 + Psyr_2835 0.73 +3.2
3,409,978 + Psyr_2835 0.73 +5.4
3,409,978 + Psyr_2835 0.73 +5.5
3,409,978 + Psyr_2835 0.73 +1.6
3,409,979 - Psyr_2835 0.73 +4.5
3,409,979 - Psyr_2835 0.73 +0.8
3,409,979 - Psyr_2835 0.73 +5.3
3,409,979 - Psyr_2835 0.73 +0.3
3,409,979 - Psyr_2835 0.73 +3.5
3,409,979 - Psyr_2835 0.73 -0.6
3,409,979 - Psyr_2835 0.73 +3.1
3,409,979 - Psyr_2835 0.73 +0.9
3,409,979 - Psyr_2835 0.73 +4.7
3,409,979 - Psyr_2835 0.73 +4.5
3,410,044 + Psyr_2835 0.84 +4.6
3,410,044 + Psyr_2835 0.84 +0.7
3,410,045 - Psyr_2835 0.85 +4.5
3,410,122 - +4.9
3,410,471 + Psyr_2836 0.54 +0.8
3,410,471 + Psyr_2836 0.54 +0.4
3,410,471 + Psyr_2836 0.54 +2.0
3,410,471 + Psyr_2836 0.54 +1.5
3,410,471 + Psyr_2836 0.54 -0.8
3,410,472 - Psyr_2836 0.54 +5.2
3,410,472 - Psyr_2836 0.54 -0.5
3,410,472 - Psyr_2836 0.54 +5.3

Or see this region's nucleotide sequence