Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2828

Experiment: KB with Mitomycin C 0.625 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Mitomycin C 0.625 ug/ml
3,400,804	-				-0.4
3,400,820	+				+3.9
3,400,820	+				+4.3
3,400,820	+				-0.3
3,400,821	-				+0.6
3,400,821	-				-1.6
3,400,929	+				+2.9
3,400,929	+				+0.8
3,400,929	+				+2.7
3,400,929	+				+4.2
3,400,929	+				+3.5
3,400,929	+				+2.9
3,400,929	+				+0.3
3,400,930	-				+4.7
3,400,930	-				-1.0
3,400,930	-				+3.8
3,400,930	-				+5.3
3,400,930	-				+4.1
3,400,930	-				+3.9
3,400,930	-				+0.2
3,401,063	+		Psyr_2827	0.23	+3.0
3,401,064	-		Psyr_2827	0.23	+5.1
3,401,064	-		Psyr_2827	0.23	+4.4
3,401,113	-		Psyr_2827	0.29	+2.1
3,401,169	+		Psyr_2827	0.35	+5.6
3,401,169	+		Psyr_2827	0.35	+5.2
3,401,170	-		Psyr_2827	0.35	+2.3
3,401,232	+		Psyr_2827	0.43	+4.8
3,401,232	+		Psyr_2827	0.43	+2.1
3,401,233	-		Psyr_2827	0.43	-0.5
3,401,233	-		Psyr_2827	0.43	+3.2
3,401,446	+		Psyr_2827	0.68	+3.8
3,401,518	-		Psyr_2827	0.76	-3.3
3,401,518	-		Psyr_2827	0.76	+4.6
3,401,518	-		Psyr_2827	0.76	+3.6
3,401,637	+		Psyr_2827	0.90	+3.0
3,401,637	+		Psyr_2827	0.90	+5.6
3,401,638	-				+3.7
3,401,767	+				-2.0
3,401,767	+				+4.5
3,401,767	+				+6.3
3,401,767	+				+4.8
3,401,767	+				+2.2
3,401,767	+				+1.7
3,401,767	+				+4.7
3,401,767	+				+1.4
3,401,767	+				+4.8
3,401,767	+				+0.6
3,401,768	-				+4.5
3,401,768	-				+1.2
3,401,768	-				+0.8
3,401,768	-				+5.8
3,401,768	-				+2.1
3,401,768	-				+2.4
3,401,768	-				+1.0
3,401,768	-				+0.2
3,401,768	-				+0.8
3,401,768	-				+2.0
3,401,768	-				+2.7
3,401,804	-				+1.8
3,402,001	-		Psyr_2828	0.11	+5.3
3,402,001	-		Psyr_2828	0.11	+1.2
3,402,001	-		Psyr_2828	0.11	+2.6
3,402,001	-		Psyr_2828	0.11	+1.1
3,402,189	+		Psyr_2828	0.20	+0.7
3,402,190	-		Psyr_2828	0.21	+5.5
3,402,381	-		Psyr_2828	0.30	+0.6
3,402,552	+		Psyr_2828	0.38	+3.9
3,402,552	+		Psyr_2828	0.38	-0.1
3,402,553	-		Psyr_2828	0.38	+6.4
3,402,847	+		Psyr_2828	0.53	+0.2
3,402,847	+		Psyr_2828	0.53	+6.4
3,402,847	+		Psyr_2828	0.53	+1.2
3,402,847	+		Psyr_2828	0.53	+6.5
3,402,847	+		Psyr_2828	0.53	+6.1
3,402,847	+		Psyr_2828	0.53	+6.9
3,402,847	+		Psyr_2828	0.53	+0.4
3,402,847	+		Psyr_2828	0.53	+2.3
3,402,847	+		Psyr_2828	0.53	+7.2
3,402,847	+		Psyr_2828	0.53	+2.9
3,402,847	+		Psyr_2828	0.53	+1.8
3,402,848	-		Psyr_2828	0.53	+4.8
3,403,064	-		Psyr_2828	0.63	+1.5
3,403,083	-		Psyr_2828	0.64	+0.8
3,403,083	-		Psyr_2828	0.64	+2.4
3,403,083	-		Psyr_2828	0.64	+4.8
3,403,123	+		Psyr_2828	0.66	+1.2
3,403,123	+		Psyr_2828	0.66	+4.7
3,403,252	-		Psyr_2828	0.72	+4.6
3,403,252	-		Psyr_2828	0.72	+4.7
3,403,252	-		Psyr_2828	0.72	+0.7
3,403,264	+		Psyr_2828	0.73	+5.9
3,403,264	+		Psyr_2828	0.73	+1.2
3,403,418	-		Psyr_2828	0.80	+2.7
3,403,496	+		Psyr_2828	0.84	+3.2
3,403,496	+		Psyr_2828	0.84	+4.4
3,403,497	-		Psyr_2828	0.84	+1.1
3,403,646	+				+2.8
3,403,647	-				+0.2
3,403,674	-				+6.9
3,403,825	+				+5.6
3,403,825	+				+4.0
3,403,825	+				+0.2
3,403,826	-				-0.4
3,403,826	-				+4.5
3,403,826	-				-2.1
3,403,830	+				+2.1
3,403,845	+				+1.8
3,403,846	-				+6.5
3,403,847	+				+2.5
3,403,847	+				-0.9
3,403,847	+				+1.5
3,403,847	+				+0.8
3,403,847	+				+0.4
3,403,848	-				+5.3
3,403,848	-				+2.0
3,403,848	-				+3.4
3,403,848	-				+5.2
3,403,848	-				+0.6
3,403,848	-				+3.9
3,403,848	-				+4.5
3,403,848	-				+5.3
3,403,848	-				+1.7
3,403,848	-				+3.6
3,403,848	-				+0.9
3,403,848	-				+5.7
3,403,848	-				+3.8
3,403,848	-				+1.1
3,403,856	-				+5.4
3,403,933	+				-0.9
3,403,934	-				+3.7
3,404,009	-				+1.8
3,404,020	+				+4.4
3,404,021	-				+1.5
3,404,030	+				+4.5
3,404,030	+				+4.3
3,404,030	+				+0.1
3,404,030	+				+4.4
3,404,030	+				-0.3
3,404,030	+				-0.0
3,404,030	+				-1.1
3,404,030	+				+4.4
3,404,031	-				+6.7
3,404,032	+				+1.6
3,404,032	+				+2.6
3,404,032	+				+3.8
3,404,032	+				+5.0
3,404,032	+				-2.1
3,404,032	+				+0.8
3,404,033	-				+1.6
3,404,033	-				+6.0
3,404,033	-				+5.2
3,404,033	-				+0.8
3,404,033	-				+2.3
3,404,033	-				+3.1
3,404,033	-				+1.9
3,404,033	-				+3.6
3,404,033	-				+0.1
3,404,033	-				+4.1
3,404,033	-				+2.0
3,404,044	+				+3.2
3,404,070	+				+0.5
3,404,070	+				+4.2
3,404,070	+				-0.8
3,404,071	-				+1.6
3,404,071	-				+3.9
3,404,147	+				+1.5
3,404,148	-				+3.4
3,404,213	+				+2.4
3,404,213	+				+2.9
3,404,213	+				+6.4
3,404,213	+				+4.9
3,404,214	-				+1.2
3,404,214	-				+1.6
3,404,214	-				+4.5
3,404,214	-				+5.4
3,404,255	-		Psyr_2829	0.19	+3.9
3,404,296	+		Psyr_2829	0.32	+1.4
3,404,296	+		Psyr_2829	0.32	+6.2
3,404,297	-		Psyr_2829	0.33	+1.3
3,404,297	-		Psyr_2829	0.33	+0.6
3,404,371	+		Psyr_2829	0.56	+4.7
3,404,653	-		Psyr_2830	0.23	+6.1
3,404,653	-		Psyr_2830	0.23	+1.5
3,404,668	-		Psyr_2830	0.25	+4.4
3,404,668	-		Psyr_2830	0.25	+5.2