Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2827

Experiment: KB with Mitomycin C 0.625 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2825 and Psyr_2826 are separated by 7 nucleotidesPsyr_2826 and Psyr_2827 are separated by 85 nucleotidesPsyr_2827 and Psyr_2828 are separated by 44 nucleotides Psyr_2825: Psyr_2825 - DNA methylase N-4/N-6, at 3,399,004 to 3,400,125 _2825 Psyr_2826: Psyr_2826 - hypothetical protein, at 3,400,133 to 3,400,780 _2826 Psyr_2827: Psyr_2827 - phage-related protein, at 3,400,866 to 3,401,723 _2827 Psyr_2828: Psyr_2828 - C-5 cytosine-specific DNA methylase, at 3,401,768 to 3,403,822 _2828 Position (kb) 3400 3401 3402Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6at 3400.030 kb on + strandat 3400.207 kb on + strand, within Psyr_2826at 3400.208 kb on - strand, within Psyr_2826at 3400.208 kb on - strand, within Psyr_2826at 3400.211 kb on + strand, within Psyr_2826at 3400.211 kb on + strand, within Psyr_2826at 3400.272 kb on - strand, within Psyr_2826at 3400.374 kb on + strand, within Psyr_2826at 3400.424 kb on + strand, within Psyr_2826at 3400.480 kb on - strand, within Psyr_2826at 3400.480 kb on - strand, within Psyr_2826at 3400.480 kb on - strand, within Psyr_2826at 3400.484 kb on + strand, within Psyr_2826at 3400.484 kb on + strand, within Psyr_2826at 3400.493 kb on - strand, within Psyr_2826at 3400.804 kb on - strandat 3400.820 kb on + strandat 3400.820 kb on + strandat 3400.820 kb on + strandat 3400.821 kb on - strandat 3400.821 kb on - strandat 3400.929 kb on + strandat 3400.929 kb on + strandat 3400.929 kb on + strandat 3400.929 kb on + strandat 3400.929 kb on + strandat 3400.929 kb on + strandat 3400.929 kb on + strandat 3400.930 kb on - strandat 3400.930 kb on - strandat 3400.930 kb on - strandat 3400.930 kb on - strandat 3400.930 kb on - strandat 3400.930 kb on - strandat 3400.930 kb on - strandat 3401.063 kb on + strand, within Psyr_2827at 3401.064 kb on - strand, within Psyr_2827at 3401.064 kb on - strand, within Psyr_2827at 3401.113 kb on - strand, within Psyr_2827at 3401.169 kb on + strand, within Psyr_2827at 3401.169 kb on + strand, within Psyr_2827at 3401.170 kb on - strand, within Psyr_2827at 3401.232 kb on + strand, within Psyr_2827at 3401.232 kb on + strand, within Psyr_2827at 3401.233 kb on - strand, within Psyr_2827at 3401.233 kb on - strand, within Psyr_2827at 3401.446 kb on + strand, within Psyr_2827at 3401.518 kb on - strand, within Psyr_2827at 3401.518 kb on - strand, within Psyr_2827at 3401.518 kb on - strand, within Psyr_2827at 3401.637 kb on + strand, within Psyr_2827at 3401.637 kb on + strand, within Psyr_2827at 3401.638 kb on - strandat 3401.767 kb on + strandat 3401.767 kb on + strandat 3401.767 kb on + strandat 3401.767 kb on + strandat 3401.767 kb on + strandat 3401.767 kb on + strandat 3401.767 kb on + strandat 3401.767 kb on + strandat 3401.767 kb on + strandat 3401.767 kb on + strandat 3401.768 kb on - strandat 3401.768 kb on - strandat 3401.768 kb on - strandat 3401.768 kb on - strandat 3401.768 kb on - strandat 3401.768 kb on - strandat 3401.768 kb on - strandat 3401.768 kb on - strandat 3401.768 kb on - strandat 3401.768 kb on - strandat 3401.768 kb on - strandat 3401.804 kb on - strandat 3402.001 kb on - strand, within Psyr_2828at 3402.001 kb on - strand, within Psyr_2828at 3402.001 kb on - strand, within Psyr_2828at 3402.001 kb on - strand, within Psyr_2828at 3402.189 kb on + strand, within Psyr_2828at 3402.190 kb on - strand, within Psyr_2828at 3402.381 kb on - strand, within Psyr_2828at 3402.552 kb on + strand, within Psyr_2828at 3402.552 kb on + strand, within Psyr_2828at 3402.553 kb on - strand, within Psyr_2828

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
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3,400,030 + +3.3
3,400,207 + Psyr_2826 0.11 -4.7
3,400,208 - Psyr_2826 0.12 +0.4
3,400,208 - Psyr_2826 0.12 +3.3
3,400,211 + Psyr_2826 0.12 -0.8
3,400,211 + Psyr_2826 0.12 -0.8
3,400,272 - Psyr_2826 0.21 +2.1
3,400,374 + Psyr_2826 0.37 +0.8
3,400,424 + Psyr_2826 0.45 +1.7
3,400,480 - Psyr_2826 0.54 +2.1
3,400,480 - Psyr_2826 0.54 +1.7
3,400,480 - Psyr_2826 0.54 +1.0
3,400,484 + Psyr_2826 0.54 -1.1
3,400,484 + Psyr_2826 0.54 +3.9
3,400,493 - Psyr_2826 0.56 +3.6
3,400,804 - -0.4
3,400,820 + +3.9
3,400,820 + +4.3
3,400,820 + -0.3
3,400,821 - +0.6
3,400,821 - -1.6
3,400,929 + +2.9
3,400,929 + +0.8
3,400,929 + +2.7
3,400,929 + +4.2
3,400,929 + +3.5
3,400,929 + +2.9
3,400,929 + +0.3
3,400,930 - +4.7
3,400,930 - -1.0
3,400,930 - +3.8
3,400,930 - +5.3
3,400,930 - +4.1
3,400,930 - +3.9
3,400,930 - +0.2
3,401,063 + Psyr_2827 0.23 +3.0
3,401,064 - Psyr_2827 0.23 +5.1
3,401,064 - Psyr_2827 0.23 +4.4
3,401,113 - Psyr_2827 0.29 +2.1
3,401,169 + Psyr_2827 0.35 +5.6
3,401,169 + Psyr_2827 0.35 +5.2
3,401,170 - Psyr_2827 0.35 +2.3
3,401,232 + Psyr_2827 0.43 +4.8
3,401,232 + Psyr_2827 0.43 +2.1
3,401,233 - Psyr_2827 0.43 -0.5
3,401,233 - Psyr_2827 0.43 +3.2
3,401,446 + Psyr_2827 0.68 +3.8
3,401,518 - Psyr_2827 0.76 -3.3
3,401,518 - Psyr_2827 0.76 +4.6
3,401,518 - Psyr_2827 0.76 +3.6
3,401,637 + Psyr_2827 0.90 +3.0
3,401,637 + Psyr_2827 0.90 +5.6
3,401,638 - +3.7
3,401,767 + -2.0
3,401,767 + +4.5
3,401,767 + +6.3
3,401,767 + +4.8
3,401,767 + +2.2
3,401,767 + +1.7
3,401,767 + +4.7
3,401,767 + +1.4
3,401,767 + +4.8
3,401,767 + +0.6
3,401,768 - +4.5
3,401,768 - +1.2
3,401,768 - +0.8
3,401,768 - +5.8
3,401,768 - +2.1
3,401,768 - +2.4
3,401,768 - +1.0
3,401,768 - +0.2
3,401,768 - +0.8
3,401,768 - +2.0
3,401,768 - +2.7
3,401,804 - +1.8
3,402,001 - Psyr_2828 0.11 +5.3
3,402,001 - Psyr_2828 0.11 +1.2
3,402,001 - Psyr_2828 0.11 +2.6
3,402,001 - Psyr_2828 0.11 +1.1
3,402,189 + Psyr_2828 0.20 +0.7
3,402,190 - Psyr_2828 0.21 +5.5
3,402,381 - Psyr_2828 0.30 +0.6
3,402,552 + Psyr_2828 0.38 +3.9
3,402,552 + Psyr_2828 0.38 -0.1
3,402,553 - Psyr_2828 0.38 +6.4

Or see this region's nucleotide sequence