Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2821

Experiment: KB with Mitomycin C 0.625 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2820 and Psyr_2821 overlap by 4 nucleotidesPsyr_2821 and Psyr_2822 overlap by 4 nucleotidesPsyr_2822 and Psyr_2823 are separated by 81 nucleotides Psyr_2820: Psyr_2820 - RecT protein, at 3,394,228 to 3,395,115 _2820 Psyr_2821: Psyr_2821 - conserved hypothetical protein, at 3,395,112 to 3,396,773 _2821 Psyr_2822: Psyr_2822 - hypothetical protein, at 3,396,770 to 3,397,132 _2822 Psyr_2823: Psyr_2823 - hypothetical protein, at 3,397,214 to 3,397,597 _2823 Position (kb) 3395 3396 3397Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7at 3394.177 kb on - strandat 3394.227 kb on + strandat 3394.227 kb on + strandat 3394.228 kb on - strandat 3394.316 kb on + strandat 3394.534 kb on - strand, within Psyr_2820at 3394.831 kb on + strand, within Psyr_2820at 3394.832 kb on - strand, within Psyr_2820at 3394.945 kb on + strand, within Psyr_2820at 3395.047 kb on + strandat 3395.048 kb on - strandat 3395.048 kb on - strandat 3395.123 kb on + strandat 3395.169 kb on + strandat 3395.170 kb on - strandat 3395.289 kb on + strand, within Psyr_2821at 3395.289 kb on + strand, within Psyr_2821at 3395.290 kb on - strand, within Psyr_2821at 3395.290 kb on - strand, within Psyr_2821at 3395.290 kb on - strand, within Psyr_2821at 3395.290 kb on - strand, within Psyr_2821at 3395.290 kb on - strand, within Psyr_2821at 3395.290 kb on - strand, within Psyr_2821at 3395.502 kb on + strand, within Psyr_2821at 3395.502 kb on + strand, within Psyr_2821at 3395.503 kb on - strand, within Psyr_2821at 3395.503 kb on - strand, within Psyr_2821at 3395.503 kb on - strand, within Psyr_2821at 3395.505 kb on + strand, within Psyr_2821at 3395.505 kb on + strand, within Psyr_2821at 3395.602 kb on - strand, within Psyr_2821at 3395.674 kb on - strand, within Psyr_2821at 3395.747 kb on - strand, within Psyr_2821at 3396.599 kb on + strand, within Psyr_2821at 3396.600 kb on - strand, within Psyr_2821at 3396.600 kb on - strand, within Psyr_2821at 3396.600 kb on - strand, within Psyr_2821at 3396.600 kb on - strand, within Psyr_2821at 3396.600 kb on - strand, within Psyr_2821at 3396.868 kb on - strand, within Psyr_2822at 3396.938 kb on + strand, within Psyr_2822at 3396.938 kb on + strand, within Psyr_2822at 3396.962 kb on + strand, within Psyr_2822at 3396.962 kb on + strand, within Psyr_2822at 3396.962 kb on + strand, within Psyr_2822at 3396.963 kb on - strand, within Psyr_2822at 3396.963 kb on - strand, within Psyr_2822at 3397.094 kb on + strand, within Psyr_2822at 3397.094 kb on + strand, within Psyr_2822at 3397.106 kb on + strandat 3397.211 kb on + strandat 3397.558 kb on + strand, within Psyr_2823at 3397.559 kb on - strandat 3397.616 kb on + strandat 3397.617 kb on - strandat 3397.617 kb on - strandat 3397.617 kb on - strandat 3397.617 kb on - strandat 3397.617 kb on - strandat 3397.621 kb on - strandat 3397.664 kb on + strandat 3397.664 kb on + strandat 3397.664 kb on + strandat 3397.664 kb on + strandat 3397.665 kb on - strandat 3397.721 kb on + strandat 3397.757 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
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3,394,177 - +1.9
3,394,227 + +4.8
3,394,227 + +2.0
3,394,228 - +0.7
3,394,316 + +2.0
3,394,534 - Psyr_2820 0.34 +4.8
3,394,831 + Psyr_2820 0.68 -0.6
3,394,832 - Psyr_2820 0.68 +2.5
3,394,945 + Psyr_2820 0.81 +1.1
3,395,047 + +1.4
3,395,048 - +4.1
3,395,048 - +2.4
3,395,123 + +3.4
3,395,169 + +3.1
3,395,170 - +6.7
3,395,289 + Psyr_2821 0.11 +1.4
3,395,289 + Psyr_2821 0.11 +3.7
3,395,290 - Psyr_2821 0.11 +1.3
3,395,290 - Psyr_2821 0.11 +1.3
3,395,290 - Psyr_2821 0.11 +6.5
3,395,290 - Psyr_2821 0.11 +1.5
3,395,290 - Psyr_2821 0.11 +3.8
3,395,290 - Psyr_2821 0.11 +4.3
3,395,502 + Psyr_2821 0.23 +5.8
3,395,502 + Psyr_2821 0.23 +5.4
3,395,503 - Psyr_2821 0.24 +4.5
3,395,503 - Psyr_2821 0.24 +4.0
3,395,503 - Psyr_2821 0.24 +2.0
3,395,505 + Psyr_2821 0.24 -0.5
3,395,505 + Psyr_2821 0.24 +2.8
3,395,602 - Psyr_2821 0.29 -3.3
3,395,674 - Psyr_2821 0.34 +0.4
3,395,747 - Psyr_2821 0.38 -0.7
3,396,599 + Psyr_2821 0.89 +1.2
3,396,600 - Psyr_2821 0.90 +0.7
3,396,600 - Psyr_2821 0.90 +5.9
3,396,600 - Psyr_2821 0.90 +2.8
3,396,600 - Psyr_2821 0.90 +2.0
3,396,600 - Psyr_2821 0.90 +0.4
3,396,868 - Psyr_2822 0.27 +6.1
3,396,938 + Psyr_2822 0.46 +4.4
3,396,938 + Psyr_2822 0.46 +2.6
3,396,962 + Psyr_2822 0.53 +0.8
3,396,962 + Psyr_2822 0.53 +6.1
3,396,962 + Psyr_2822 0.53 +3.7
3,396,963 - Psyr_2822 0.53 +1.8
3,396,963 - Psyr_2822 0.53 +5.5
3,397,094 + Psyr_2822 0.89 +2.3
3,397,094 + Psyr_2822 0.89 +1.1
3,397,106 + -0.0
3,397,211 + -0.3
3,397,558 + Psyr_2823 0.90 -0.0
3,397,559 - +3.6
3,397,616 + -2.3
3,397,617 - +4.2
3,397,617 - +6.9
3,397,617 - +1.5
3,397,617 - +2.4
3,397,617 - +0.1
3,397,621 - +5.9
3,397,664 + +0.3
3,397,664 + +3.1
3,397,664 + +1.3
3,397,664 + -0.7
3,397,665 - +2.0
3,397,721 + -0.9
3,397,757 - +7.2

Or see this region's nucleotide sequence