Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2817

Experiment: KB with Mitomycin C 0.625 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2816 and Psyr_2817 are separated by 363 nucleotidesPsyr_2817 and Psyr_2818 are separated by 20 nucleotidesPsyr_2818 and Psyr_2819 overlap by 4 nucleotidesPsyr_2819 and Psyr_2820 are separated by 329 nucleotides Psyr_2816: Psyr_2816 - hypothetical protein, at 3,391,672 to 3,392,451 _2816 Psyr_2817: Psyr_2817 - hypothetical protein, at 3,392,815 to 3,393,282 _2817 Psyr_2818: Psyr_2818 - hypothetical protein, at 3,393,303 to 3,393,710 _2818 Psyr_2819: Psyr_2819 - hypothetical protein, at 3,393,707 to 3,393,898 _2819 Psyr_2820: Psyr_2820 - RecT protein, at 3,394,228 to 3,395,115 _2820 Position (kb) 3392 3393 3394Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 3391.841 kb on + strand, within Psyr_2816at 3391.891 kb on + strand, within Psyr_2816at 3391.891 kb on + strand, within Psyr_2816at 3391.891 kb on + strand, within Psyr_2816at 3392.140 kb on + strand, within Psyr_2816at 3392.141 kb on - strand, within Psyr_2816at 3392.149 kb on + strand, within Psyr_2816at 3392.149 kb on + strand, within Psyr_2816at 3392.149 kb on + strand, within Psyr_2816at 3392.300 kb on + strand, within Psyr_2816at 3392.300 kb on + strand, within Psyr_2816at 3392.300 kb on + strand, within Psyr_2816at 3392.300 kb on + strand, within Psyr_2816at 3392.301 kb on - strand, within Psyr_2816at 3392.301 kb on - strand, within Psyr_2816at 3392.301 kb on - strand, within Psyr_2816at 3392.301 kb on - strand, within Psyr_2816at 3392.301 kb on - strand, within Psyr_2816at 3392.301 kb on - strand, within Psyr_2816at 3392.301 kb on - strand, within Psyr_2816at 3392.302 kb on + strand, within Psyr_2816at 3392.302 kb on + strand, within Psyr_2816at 3392.302 kb on + strand, within Psyr_2816at 3392.302 kb on + strand, within Psyr_2816at 3392.303 kb on - strand, within Psyr_2816at 3392.303 kb on - strand, within Psyr_2816at 3392.383 kb on + strandat 3392.500 kb on + strandat 3392.500 kb on + strandat 3392.585 kb on + strandat 3392.585 kb on + strandat 3392.625 kb on + strandat 3392.626 kb on - strandat 3392.626 kb on - strandat 3392.650 kb on + strandat 3392.650 kb on + strandat 3392.650 kb on + strandat 3392.650 kb on + strandat 3392.650 kb on + strandat 3392.650 kb on + strandat 3392.650 kb on + strandat 3392.650 kb on + strandat 3392.650 kb on + strandat 3392.650 kb on + strandat 3392.650 kb on + strandat 3392.651 kb on - strandat 3392.651 kb on - strandat 3392.651 kb on - strandat 3392.651 kb on - strandat 3392.651 kb on - strandat 3392.651 kb on - strandat 3392.651 kb on - strandat 3392.651 kb on - strandat 3392.651 kb on - strandat 3392.651 kb on - strandat 3392.725 kb on - strandat 3392.927 kb on + strand, within Psyr_2817at 3392.934 kb on + strand, within Psyr_2817at 3392.934 kb on + strand, within Psyr_2817at 3392.934 kb on + strand, within Psyr_2817at 3392.934 kb on + strand, within Psyr_2817at 3392.934 kb on + strand, within Psyr_2817at 3392.935 kb on - strand, within Psyr_2817at 3392.935 kb on - strand, within Psyr_2817at 3392.935 kb on - strand, within Psyr_2817at 3392.935 kb on - strand, within Psyr_2817at 3392.935 kb on - strand, within Psyr_2817at 3392.935 kb on - strand, within Psyr_2817at 3392.935 kb on - strand, within Psyr_2817at 3392.935 kb on - strand, within Psyr_2817at 3393.007 kb on + strand, within Psyr_2817at 3393.007 kb on + strand, within Psyr_2817at 3393.008 kb on - strand, within Psyr_2817at 3393.008 kb on - strand, within Psyr_2817at 3393.029 kb on - strand, within Psyr_2817at 3393.092 kb on + strand, within Psyr_2817at 3393.092 kb on + strand, within Psyr_2817at 3393.092 kb on + strand, within Psyr_2817at 3393.092 kb on + strand, within Psyr_2817at 3393.092 kb on + strand, within Psyr_2817at 3393.092 kb on + strandat 3393.093 kb on - strand, within Psyr_2817at 3393.093 kb on - strand, within Psyr_2817at 3393.093 kb on - strand, within Psyr_2817at 3393.093 kb on - strand, within Psyr_2817at 3393.093 kb on - strand, within Psyr_2817at 3393.164 kb on - strand, within Psyr_2817at 3393.264 kb on + strandat 3393.264 kb on + strandat 3393.264 kb on + strandat 3393.264 kb on + strandat 3393.264 kb on + strandat 3393.264 kb on + strandat 3393.264 kb on + strandat 3393.264 kb on + strandat 3393.265 kb on - strandat 3393.265 kb on - strandat 3393.549 kb on + strand, within Psyr_2818at 3393.549 kb on + strand, within Psyr_2818at 3393.549 kb on + strand, within Psyr_2818at 3393.549 kb on + strand, within Psyr_2818at 3393.549 kb on + strand, within Psyr_2818at 3393.549 kb on + strand, within Psyr_2818at 3393.549 kb on + strand, within Psyr_2818at 3393.550 kb on - strand, within Psyr_2818at 3393.550 kb on - strand, within Psyr_2818at 3393.550 kb on - strand, within Psyr_2818at 3393.550 kb on - strand, within Psyr_2818at 3393.980 kb on - strandat 3394.092 kb on + strandat 3394.092 kb on + strandat 3394.092 kb on + strandat 3394.093 kb on - strandat 3394.093 kb on - strandat 3394.093 kb on - strandat 3394.093 kb on - strandat 3394.177 kb on - strandat 3394.227 kb on + strandat 3394.227 kb on + strandat 3394.228 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
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3,391,841 + Psyr_2816 0.22 +0.9
3,391,891 + Psyr_2816 0.28 +3.6
3,391,891 + Psyr_2816 0.28 +1.0
3,391,891 + Psyr_2816 0.28 +5.0
3,392,140 + Psyr_2816 0.60 +5.0
3,392,141 - Psyr_2816 0.60 +3.4
3,392,149 + Psyr_2816 0.61 +5.9
3,392,149 + Psyr_2816 0.61 +3.6
3,392,149 + Psyr_2816 0.61 +5.8
3,392,300 + Psyr_2816 0.81 +2.7
3,392,300 + Psyr_2816 0.81 +1.2
3,392,300 + Psyr_2816 0.81 +0.3
3,392,300 + Psyr_2816 0.81 +5.0
3,392,301 - Psyr_2816 0.81 +0.1
3,392,301 - Psyr_2816 0.81 +4.3
3,392,301 - Psyr_2816 0.81 +1.4
3,392,301 - Psyr_2816 0.81 +1.6
3,392,301 - Psyr_2816 0.81 +3.9
3,392,301 - Psyr_2816 0.81 -3.2
3,392,301 - Psyr_2816 0.81 -2.1
3,392,302 + Psyr_2816 0.81 +2.2
3,392,302 + Psyr_2816 0.81 +5.7
3,392,302 + Psyr_2816 0.81 +1.4
3,392,302 + Psyr_2816 0.81 +0.8
3,392,303 - Psyr_2816 0.81 +4.3
3,392,303 - Psyr_2816 0.81 +4.6
3,392,383 + +2.7
3,392,500 + -0.6
3,392,500 + +5.1
3,392,585 + +4.8
3,392,585 + +2.2
3,392,625 + +5.5
3,392,626 - +1.6
3,392,626 - +4.3
3,392,650 + +0.5
3,392,650 + +3.3
3,392,650 + +0.6
3,392,650 + +1.9
3,392,650 + +5.9
3,392,650 + +5.2
3,392,650 + +1.1
3,392,650 + +3.6
3,392,650 + +1.9
3,392,650 + +6.0
3,392,650 + +6.3
3,392,651 - +3.2
3,392,651 - +4.0
3,392,651 - +1.1
3,392,651 - +2.3
3,392,651 - -0.3
3,392,651 - +3.3
3,392,651 - +2.3
3,392,651 - -1.2
3,392,651 - +2.4
3,392,651 - +2.9
3,392,725 - +0.7
3,392,927 + Psyr_2817 0.24 +0.1
3,392,934 + Psyr_2817 0.25 -0.7
3,392,934 + Psyr_2817 0.25 +1.9
3,392,934 + Psyr_2817 0.25 +4.0
3,392,934 + Psyr_2817 0.25 +4.1
3,392,934 + Psyr_2817 0.25 +4.6
3,392,935 - Psyr_2817 0.26 +4.9
3,392,935 - Psyr_2817 0.26 +1.8
3,392,935 - Psyr_2817 0.26 +3.6
3,392,935 - Psyr_2817 0.26 +2.1
3,392,935 - Psyr_2817 0.26 +0.6
3,392,935 - Psyr_2817 0.26 +4.1
3,392,935 - Psyr_2817 0.26 +1.8
3,392,935 - Psyr_2817 0.26 +5.2
3,393,007 + Psyr_2817 0.41 +2.1
3,393,007 + Psyr_2817 0.41 +5.7
3,393,008 - Psyr_2817 0.41 +4.7
3,393,008 - Psyr_2817 0.41 +5.5
3,393,029 - Psyr_2817 0.46 +2.8
3,393,092 + Psyr_2817 0.59 +2.4
3,393,092 + Psyr_2817 0.59 +1.8
3,393,092 + Psyr_2817 0.59 +0.4
3,393,092 + Psyr_2817 0.59 +3.9
3,393,092 + Psyr_2817 0.59 -1.8
3,393,092 + +1.3
3,393,093 - Psyr_2817 0.59 +1.6
3,393,093 - Psyr_2817 0.59 +3.8
3,393,093 - Psyr_2817 0.59 +0.7
3,393,093 - Psyr_2817 0.59 +6.1
3,393,093 - Psyr_2817 0.59 +1.7
3,393,164 - Psyr_2817 0.75 +6.0
3,393,264 + +1.1
3,393,264 + +5.9
3,393,264 + +5.2
3,393,264 + -0.9
3,393,264 + +5.3
3,393,264 + -0.8
3,393,264 + -0.1
3,393,264 + +4.2
3,393,265 - +1.3
3,393,265 - +2.4
3,393,549 + Psyr_2818 0.60 +1.3
3,393,549 + Psyr_2818 0.60 -1.7
3,393,549 + Psyr_2818 0.60 +3.3
3,393,549 + Psyr_2818 0.60 +1.3
3,393,549 + Psyr_2818 0.60 +4.4
3,393,549 + Psyr_2818 0.60 +5.0
3,393,549 + Psyr_2818 0.60 +0.5
3,393,550 - Psyr_2818 0.61 +6.2
3,393,550 - Psyr_2818 0.61 +1.6
3,393,550 - Psyr_2818 0.61 +0.8
3,393,550 - Psyr_2818 0.61 +0.5
3,393,980 - +1.6
3,394,092 + +3.1
3,394,092 + +4.3
3,394,092 + +2.1
3,394,093 - +1.8
3,394,093 - +2.3
3,394,093 - +5.1
3,394,093 - +5.9
3,394,177 - +1.9
3,394,227 + +4.8
3,394,227 + +2.0
3,394,228 - +0.7

Or see this region's nucleotide sequence