Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2815

Experiment: KB with Mitomycin C 0.625 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2812 and Psyr_2813 are separated by 12 nucleotidesPsyr_2813 and Psyr_2814 are separated by 22 nucleotidesPsyr_2814 and Psyr_2815 are separated by 303 nucleotidesPsyr_2815 and Psyr_2816 are separated by 967 nucleotides Psyr_2812: Psyr_2812 - phage repressor protein, Serine peptidase, MEROPS family S24, at 3,388,088 to 3,388,738 _2812 Psyr_2813: Psyr_2813 - conserved hypothetical protein, at 3,388,751 to 3,389,023 _2813 Psyr_2814: Psyr_2814 - hypothetical protein, at 3,389,046 to 3,389,366 _2814 Psyr_2815: Psyr_2815 - conserved hypothetical protein, at 3,389,670 to 3,390,704 _2815 Psyr_2816: Psyr_2816 - hypothetical protein, at 3,391,672 to 3,392,451 _2816 Position (kb) 3389 3390 3391Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6 7at 3388.751 kb on - strandat 3388.824 kb on + strand, within Psyr_2813at 3388.824 kb on + strand, within Psyr_2813at 3388.824 kb on + strand, within Psyr_2813at 3388.974 kb on - strand, within Psyr_2813at 3388.977 kb on + strand, within Psyr_2813at 3388.977 kb on + strand, within Psyr_2813at 3388.977 kb on + strand, within Psyr_2813at 3388.977 kb on + strand, within Psyr_2813at 3388.977 kb on + strand, within Psyr_2813at 3388.977 kb on + strand, within Psyr_2813at 3388.977 kb on + strand, within Psyr_2813at 3388.977 kb on + strand, within Psyr_2813at 3388.977 kb on + strand, within Psyr_2813at 3388.977 kb on + strand, within Psyr_2813at 3388.977 kb on + strand, within Psyr_2813at 3388.977 kb on + strand, within Psyr_2813at 3388.978 kb on - strand, within Psyr_2813at 3388.978 kb on - strand, within Psyr_2813at 3388.978 kb on - strand, within Psyr_2813at 3388.978 kb on - strand, within Psyr_2813at 3388.978 kb on - strand, within Psyr_2813at 3388.978 kb on - strand, within Psyr_2813at 3388.978 kb on - strand, within Psyr_2813at 3388.978 kb on - strand, within Psyr_2813at 3388.978 kb on - strand, within Psyr_2813at 3388.978 kb on - strand, within Psyr_2813at 3388.978 kb on - strand, within Psyr_2813at 3388.978 kb on - strand, within Psyr_2813at 3388.978 kb on - strand, within Psyr_2813at 3388.978 kb on - strand, within Psyr_2813at 3388.988 kb on - strand, within Psyr_2813at 3389.046 kb on - strandat 3389.069 kb on + strandat 3389.290 kb on - strand, within Psyr_2814at 3389.351 kb on + strandat 3389.352 kb on - strandat 3389.352 kb on - strandat 3389.428 kb on - strandat 3389.428 kb on - strandat 3389.431 kb on + strandat 3389.431 kb on + strandat 3389.431 kb on + strandat 3389.431 kb on + strandat 3389.431 kb on + strandat 3389.431 kb on + strandat 3389.431 kb on + strandat 3389.432 kb on - strandat 3389.432 kb on - strandat 3389.432 kb on - strandat 3389.432 kb on - strandat 3389.432 kb on - strandat 3389.432 kb on - strandat 3389.432 kb on - strandat 3389.432 kb on - strandat 3389.432 kb on - strandat 3389.432 kb on - strandat 3389.495 kb on + strandat 3389.495 kb on + strandat 3389.496 kb on - strandat 3389.514 kb on + strandat 3389.514 kb on + strandat 3389.515 kb on - strandat 3389.564 kb on + strandat 3389.564 kb on + strandat 3389.564 kb on + strandat 3389.564 kb on + strandat 3389.564 kb on + strandat 3389.564 kb on + strandat 3389.564 kb on + strandat 3389.564 kb on + strandat 3389.564 kb on + strandat 3389.565 kb on - strandat 3389.565 kb on - strandat 3389.565 kb on - strandat 3389.565 kb on - strandat 3389.565 kb on - strandat 3389.565 kb on - strandat 3389.570 kb on - strandat 3389.570 kb on - strandat 3389.631 kb on + strandat 3389.631 kb on + strandat 3389.632 kb on - strandat 3389.632 kb on - strandat 3389.671 kb on + strandat 3389.672 kb on - strandat 3389.762 kb on + strandat 3389.762 kb on + strandat 3389.762 kb on + strandat 3389.763 kb on - strandat 3389.764 kb on + strandat 3389.764 kb on + strandat 3389.793 kb on + strand, within Psyr_2815at 3389.793 kb on + strand, within Psyr_2815at 3389.794 kb on - strand, within Psyr_2815at 3389.794 kb on - strand, within Psyr_2815at 3389.812 kb on + strand, within Psyr_2815at 3389.812 kb on + strand, within Psyr_2815at 3389.813 kb on - strand, within Psyr_2815at 3389.813 kb on - strand, within Psyr_2815at 3389.850 kb on + strand, within Psyr_2815at 3389.894 kb on + strand, within Psyr_2815at 3389.904 kb on - strand, within Psyr_2815at 3389.904 kb on - strand, within Psyr_2815at 3389.963 kb on - strand, within Psyr_2815at 3389.975 kb on + strand, within Psyr_2815at 3389.975 kb on + strand, within Psyr_2815at 3389.975 kb on + strand, within Psyr_2815at 3389.976 kb on - strand, within Psyr_2815at 3389.979 kb on + strand, within Psyr_2815at 3389.984 kb on - strand, within Psyr_2815at 3390.030 kb on + strand, within Psyr_2815at 3390.031 kb on - strand, within Psyr_2815at 3390.032 kb on + strand, within Psyr_2815at 3390.032 kb on + strand, within Psyr_2815at 3390.032 kb on + strand, within Psyr_2815at 3390.032 kb on + strand, within Psyr_2815at 3390.032 kb on + strand, within Psyr_2815at 3390.033 kb on - strand, within Psyr_2815at 3390.033 kb on - strand, within Psyr_2815at 3390.033 kb on - strand, within Psyr_2815at 3390.036 kb on + strand, within Psyr_2815at 3390.036 kb on + strand, within Psyr_2815at 3390.036 kb on + strand, within Psyr_2815at 3390.037 kb on - strand, within Psyr_2815at 3390.139 kb on + strand, within Psyr_2815at 3390.151 kb on - strand, within Psyr_2815at 3390.151 kb on - strand, within Psyr_2815at 3390.172 kb on + strand, within Psyr_2815at 3390.173 kb on - strand, within Psyr_2815at 3390.173 kb on - strand, within Psyr_2815at 3390.203 kb on + strand, within Psyr_2815at 3390.216 kb on + strand, within Psyr_2815at 3390.216 kb on + strand, within Psyr_2815at 3390.216 kb on + strand, within Psyr_2815at 3390.217 kb on - strand, within Psyr_2815at 3390.217 kb on - strand, within Psyr_2815at 3390.217 kb on - strand, within Psyr_2815at 3390.306 kb on + strand, within Psyr_2815at 3390.306 kb on + strand, within Psyr_2815at 3390.306 kb on + strand, within Psyr_2815at 3390.306 kb on + strand, within Psyr_2815at 3390.306 kb on + strand, within Psyr_2815at 3390.306 kb on + strand, within Psyr_2815at 3390.307 kb on - strand, within Psyr_2815at 3390.307 kb on - strand, within Psyr_2815at 3390.307 kb on - strand, within Psyr_2815at 3390.307 kb on - strand, within Psyr_2815at 3390.307 kb on - strand, within Psyr_2815at 3390.307 kb on - strand, within Psyr_2815at 3390.307 kb on - strand, within Psyr_2815at 3390.310 kb on + strand, within Psyr_2815at 3390.310 kb on + strand, within Psyr_2815at 3390.311 kb on - strand, within Psyr_2815at 3390.311 kb on - strand, within Psyr_2815at 3390.311 kb on - strand, within Psyr_2815at 3390.325 kb on + strand, within Psyr_2815at 3390.325 kb on + strand, within Psyr_2815at 3390.325 kb on + strand, within Psyr_2815at 3390.325 kb on + strand, within Psyr_2815at 3390.326 kb on - strand, within Psyr_2815at 3390.326 kb on - strand, within Psyr_2815at 3390.326 kb on - strand, within Psyr_2815at 3390.404 kb on + strand, within Psyr_2815at 3390.405 kb on - strand, within Psyr_2815at 3390.405 kb on - strand, within Psyr_2815at 3390.405 kb on - strand, within Psyr_2815at 3390.418 kb on + strand, within Psyr_2815at 3390.426 kb on + strand, within Psyr_2815at 3390.427 kb on - strand, within Psyr_2815at 3390.431 kb on + strand, within Psyr_2815at 3390.431 kb on + strand, within Psyr_2815at 3390.432 kb on - strand, within Psyr_2815at 3390.432 kb on - strand, within Psyr_2815at 3390.432 kb on - strand, within Psyr_2815at 3390.432 kb on - strand, within Psyr_2815at 3390.483 kb on - strand, within Psyr_2815at 3390.516 kb on + strand, within Psyr_2815at 3390.517 kb on - strand, within Psyr_2815at 3390.517 kb on - strand, within Psyr_2815at 3390.526 kb on - strand, within Psyr_2815at 3390.617 kb on + strandat 3390.617 kb on + strandat 3390.617 kb on + strandat 3390.618 kb on - strandat 3390.618 kb on - strandat 3390.624 kb on + strandat 3390.625 kb on - strandat 3390.625 kb on - strandat 3390.657 kb on - strandat 3390.677 kb on + strandat 3390.677 kb on + strandat 3390.678 kb on - strandat 3390.680 kb on + strandat 3390.680 kb on + strandat 3390.680 kb on + strandat 3390.718 kb on + strandat 3390.719 kb on - strandat 3390.878 kb on + strandat 3390.878 kb on + strandat 3390.878 kb on + strandat 3390.879 kb on - strandat 3391.038 kb on - strandat 3391.111 kb on + strandat 3391.111 kb on + strandat 3391.111 kb on + strandat 3391.111 kb on + strandat 3391.111 kb on + strandat 3391.112 kb on - strandat 3391.112 kb on - strandat 3391.112 kb on - strandat 3391.127 kb on + strandat 3391.127 kb on + strandat 3391.127 kb on + strandat 3391.127 kb on + strandat 3391.128 kb on - strandat 3391.128 kb on - strandat 3391.171 kb on + strandat 3391.171 kb on + strandat 3391.171 kb on + strandat 3391.172 kb on - strandat 3391.172 kb on - strandat 3391.172 kb on - strandat 3391.549 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
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3,388,751 - +3.7
3,388,824 + Psyr_2813 0.27 +2.2
3,388,824 + Psyr_2813 0.27 +3.7
3,388,824 + Psyr_2813 0.27 +1.6
3,388,974 - Psyr_2813 0.82 +2.3
3,388,977 + Psyr_2813 0.83 +5.9
3,388,977 + Psyr_2813 0.83 +2.8
3,388,977 + Psyr_2813 0.83 +5.3
3,388,977 + Psyr_2813 0.83 +5.8
3,388,977 + Psyr_2813 0.83 +1.0
3,388,977 + Psyr_2813 0.83 +5.1
3,388,977 + Psyr_2813 0.83 +1.8
3,388,977 + Psyr_2813 0.83 +5.0
3,388,977 + Psyr_2813 0.83 +5.1
3,388,977 + Psyr_2813 0.83 +3.3
3,388,977 + Psyr_2813 0.83 +2.0
3,388,977 + Psyr_2813 0.83 +2.2
3,388,978 - Psyr_2813 0.83 +4.7
3,388,978 - Psyr_2813 0.83 +1.6
3,388,978 - Psyr_2813 0.83 +0.3
3,388,978 - Psyr_2813 0.83 +4.0
3,388,978 - Psyr_2813 0.83 +3.4
3,388,978 - Psyr_2813 0.83 +4.1
3,388,978 - Psyr_2813 0.83 +3.0
3,388,978 - Psyr_2813 0.83 -4.2
3,388,978 - Psyr_2813 0.83 +3.1
3,388,978 - Psyr_2813 0.83 +0.3
3,388,978 - Psyr_2813 0.83 +3.3
3,388,978 - Psyr_2813 0.83 +3.7
3,388,978 - Psyr_2813 0.83 +2.1
3,388,978 - Psyr_2813 0.83 -2.2
3,388,988 - Psyr_2813 0.87 +3.3
3,389,046 - +2.1
3,389,069 + +0.1
3,389,290 - Psyr_2814 0.76 +3.0
3,389,351 + +1.1
3,389,352 - -1.1
3,389,352 - +5.0
3,389,428 - +4.7
3,389,428 - +4.1
3,389,431 + +2.3
3,389,431 + +6.4
3,389,431 + +1.7
3,389,431 + +0.9
3,389,431 + +2.5
3,389,431 + +3.2
3,389,431 + +0.5
3,389,432 - +3.0
3,389,432 - +1.1
3,389,432 - +0.9
3,389,432 - +1.6
3,389,432 - +5.8
3,389,432 - -0.4
3,389,432 - -0.0
3,389,432 - +2.6
3,389,432 - +7.0
3,389,432 - +3.8
3,389,495 + +1.3
3,389,495 + +3.8
3,389,496 - +1.6
3,389,514 + +3.7
3,389,514 + +4.2
3,389,515 - +0.3
3,389,564 + +3.2
3,389,564 + +5.8
3,389,564 + +3.1
3,389,564 + +0.1
3,389,564 + +2.8
3,389,564 + +2.1
3,389,564 + +1.2
3,389,564 + +2.6
3,389,564 + +4.5
3,389,565 - +3.9
3,389,565 - +6.3
3,389,565 - +1.7
3,389,565 - +1.7
3,389,565 - +1.5
3,389,565 - +5.0
3,389,570 - +4.5
3,389,570 - +1.8
3,389,631 + +2.6
3,389,631 + +2.9
3,389,632 - +1.8
3,389,632 - +2.8
3,389,671 + -0.7
3,389,672 - +2.7
3,389,762 + -0.0
3,389,762 + -0.7
3,389,762 + +2.4
3,389,763 - +2.4
3,389,764 + +3.5
3,389,764 + +4.7
3,389,793 + Psyr_2815 0.12 +3.7
3,389,793 + Psyr_2815 0.12 +3.8
3,389,794 - Psyr_2815 0.12 +3.7
3,389,794 - Psyr_2815 0.12 +2.8
3,389,812 + Psyr_2815 0.14 +3.8
3,389,812 + Psyr_2815 0.14 -1.0
3,389,813 - Psyr_2815 0.14 +3.4
3,389,813 - Psyr_2815 0.14 +4.3
3,389,850 + Psyr_2815 0.17 -1.9
3,389,894 + Psyr_2815 0.22 +3.1
3,389,904 - Psyr_2815 0.23 +2.3
3,389,904 - Psyr_2815 0.23 +3.5
3,389,963 - Psyr_2815 0.28 +5.7
3,389,975 + Psyr_2815 0.29 +0.4
3,389,975 + Psyr_2815 0.29 -0.7
3,389,975 + Psyr_2815 0.29 +1.1
3,389,976 - Psyr_2815 0.30 +6.0
3,389,979 + Psyr_2815 0.30 +2.1
3,389,984 - Psyr_2815 0.30 +7.4
3,390,030 + Psyr_2815 0.35 +4.0
3,390,031 - Psyr_2815 0.35 +6.3
3,390,032 + Psyr_2815 0.35 +3.0
3,390,032 + Psyr_2815 0.35 +5.8
3,390,032 + Psyr_2815 0.35 +1.8
3,390,032 + Psyr_2815 0.35 +0.8
3,390,032 + Psyr_2815 0.35 -0.0
3,390,033 - Psyr_2815 0.35 +2.9
3,390,033 - Psyr_2815 0.35 +1.5
3,390,033 - Psyr_2815 0.35 +6.4
3,390,036 + Psyr_2815 0.35 +3.8
3,390,036 + Psyr_2815 0.35 +4.8
3,390,036 + Psyr_2815 0.35 -0.1
3,390,037 - Psyr_2815 0.35 +3.7
3,390,139 + Psyr_2815 0.45 -1.0
3,390,151 - Psyr_2815 0.46 +4.5
3,390,151 - Psyr_2815 0.46 +6.6
3,390,172 + Psyr_2815 0.49 +2.7
3,390,173 - Psyr_2815 0.49 +1.8
3,390,173 - Psyr_2815 0.49 +2.3
3,390,203 + Psyr_2815 0.51 +1.9
3,390,216 + Psyr_2815 0.53 +2.1
3,390,216 + Psyr_2815 0.53 +6.9
3,390,216 + Psyr_2815 0.53 +5.5
3,390,217 - Psyr_2815 0.53 +6.0
3,390,217 - Psyr_2815 0.53 +6.1
3,390,217 - Psyr_2815 0.53 +6.2
3,390,306 + Psyr_2815 0.61 +2.9
3,390,306 + Psyr_2815 0.61 -0.1
3,390,306 + Psyr_2815 0.61 +5.0
3,390,306 + Psyr_2815 0.61 +6.6
3,390,306 + Psyr_2815 0.61 +2.7
3,390,306 + Psyr_2815 0.61 +2.1
3,390,307 - Psyr_2815 0.62 +2.7
3,390,307 - Psyr_2815 0.62 -0.4
3,390,307 - Psyr_2815 0.62 +1.0
3,390,307 - Psyr_2815 0.62 +4.1
3,390,307 - Psyr_2815 0.62 +4.3
3,390,307 - Psyr_2815 0.62 +0.5
3,390,307 - Psyr_2815 0.62 +4.5
3,390,310 + Psyr_2815 0.62 +6.2
3,390,310 + Psyr_2815 0.62 -1.2
3,390,311 - Psyr_2815 0.62 +3.6
3,390,311 - Psyr_2815 0.62 +4.0
3,390,311 - Psyr_2815 0.62 -0.7
3,390,325 + Psyr_2815 0.63 +5.1
3,390,325 + Psyr_2815 0.63 +6.1
3,390,325 + Psyr_2815 0.63 +6.1
3,390,325 + Psyr_2815 0.63 +2.5
3,390,326 - Psyr_2815 0.63 -4.3
3,390,326 - Psyr_2815 0.63 +3.6
3,390,326 - Psyr_2815 0.63 +0.8
3,390,404 + Psyr_2815 0.71 +0.5
3,390,405 - Psyr_2815 0.71 +0.5
3,390,405 - Psyr_2815 0.71 +3.3
3,390,405 - Psyr_2815 0.71 +1.8
3,390,418 + Psyr_2815 0.72 +4.7
3,390,426 + Psyr_2815 0.73 +5.8
3,390,427 - Psyr_2815 0.73 +4.5
3,390,431 + Psyr_2815 0.74 +5.2
3,390,431 + Psyr_2815 0.74 +1.5
3,390,432 - Psyr_2815 0.74 +5.3
3,390,432 - Psyr_2815 0.74 +5.0
3,390,432 - Psyr_2815 0.74 +1.2
3,390,432 - Psyr_2815 0.74 -0.2
3,390,483 - Psyr_2815 0.79 +1.5
3,390,516 + Psyr_2815 0.82 -0.7
3,390,517 - Psyr_2815 0.82 +3.1
3,390,517 - Psyr_2815 0.82 +4.9
3,390,526 - Psyr_2815 0.83 +3.4
3,390,617 + -0.7
3,390,617 + +0.3
3,390,617 + -0.7
3,390,618 - +5.9
3,390,618 - +2.3
3,390,624 + -0.7
3,390,625 - +1.3
3,390,625 - +2.2
3,390,657 - +3.0
3,390,677 + -0.7
3,390,677 + +2.8
3,390,678 - +5.8
3,390,680 + -0.7
3,390,680 + +0.8
3,390,680 + +2.2
3,390,718 + +0.6
3,390,719 - +1.4
3,390,878 + +4.3
3,390,878 + +2.1
3,390,878 + +0.1
3,390,879 - +2.7
3,391,038 - +0.8
3,391,111 + +1.6
3,391,111 + +5.7
3,391,111 + +4.5
3,391,111 + +5.4
3,391,111 + +1.3
3,391,112 - +2.0
3,391,112 - +4.3
3,391,112 - +2.4
3,391,127 + +6.3
3,391,127 + +0.1
3,391,127 + -0.7
3,391,127 + +1.1
3,391,128 - +5.2
3,391,128 - +5.7
3,391,171 + +0.5
3,391,171 + -0.3
3,391,171 + +1.0
3,391,172 - +1.6
3,391,172 - +2.5
3,391,172 - +0.6
3,391,549 - +0.3

Or see this region's nucleotide sequence