Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2795

Experiment: KB with Mitomycin C 0.625 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2794 and Psyr_2795 overlap by 14 nucleotidesPsyr_2795 and Psyr_2796 are separated by 31 nucleotidesPsyr_2796 and Psyr_2797 are separated by 40 nucleotides Psyr_2794: Psyr_2794 - Protein of unknown function DUF264, at 3,377,410 to 3,378,711 _2794 Psyr_2795: Psyr_2795 - conserved hypothetical protein, at 3,378,698 to 3,379,159 _2795 Psyr_2796: Psyr_2796 - conserved hypothetical protein, at 3,379,191 to 3,379,814 _2796 Psyr_2797: Psyr_2797 - hypothetical protein, at 3,379,855 to 3,380,364 _2797 Position (kb) 3378 3379 3380Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7at 3377.742 kb on + strand, within Psyr_2794at 3377.743 kb on - strand, within Psyr_2794at 3377.743 kb on - strand, within Psyr_2794at 3377.795 kb on + strand, within Psyr_2794at 3377.795 kb on + strand, within Psyr_2794at 3377.795 kb on + strand, within Psyr_2794at 3377.795 kb on + strand, within Psyr_2794at 3377.795 kb on + strand, within Psyr_2794at 3377.795 kb on + strandat 3377.796 kb on - strand, within Psyr_2794at 3377.796 kb on - strand, within Psyr_2794at 3377.799 kb on + strand, within Psyr_2794at 3378.012 kb on - strand, within Psyr_2794at 3378.020 kb on + strand, within Psyr_2794at 3378.020 kb on + strand, within Psyr_2794at 3378.063 kb on - strand, within Psyr_2794at 3378.086 kb on + strand, within Psyr_2794at 3378.110 kb on + strand, within Psyr_2794at 3378.110 kb on + strand, within Psyr_2794at 3378.111 kb on - strand, within Psyr_2794at 3378.111 kb on - strand, within Psyr_2794at 3378.164 kb on + strand, within Psyr_2794at 3378.164 kb on + strand, within Psyr_2794at 3378.164 kb on + strand, within Psyr_2794at 3378.165 kb on - strand, within Psyr_2794at 3378.165 kb on - strand, within Psyr_2794at 3378.165 kb on - strand, within Psyr_2794at 3378.165 kb on - strand, within Psyr_2794at 3378.281 kb on + strand, within Psyr_2794at 3378.429 kb on - strand, within Psyr_2794at 3378.443 kb on + strand, within Psyr_2794at 3378.443 kb on + strand, within Psyr_2794at 3378.443 kb on + strand, within Psyr_2794at 3378.443 kb on + strand, within Psyr_2794at 3378.444 kb on - strand, within Psyr_2794at 3378.444 kb on - strand, within Psyr_2794at 3378.444 kb on - strand, within Psyr_2794at 3378.444 kb on - strand, within Psyr_2794at 3378.497 kb on + strand, within Psyr_2794at 3378.498 kb on - strand, within Psyr_2794at 3378.498 kb on - strand, within Psyr_2794at 3378.546 kb on - strand, within Psyr_2794at 3378.560 kb on + strand, within Psyr_2794at 3378.561 kb on - strand, within Psyr_2794at 3378.700 kb on - strandat 3378.731 kb on + strandat 3378.732 kb on - strandat 3378.732 kb on - strandat 3378.801 kb on + strand, within Psyr_2795at 3378.801 kb on + strand, within Psyr_2795at 3378.801 kb on + strand, within Psyr_2795at 3378.801 kb on + strand, within Psyr_2795at 3378.801 kb on + strand, within Psyr_2795at 3378.801 kb on + strand, within Psyr_2795at 3378.801 kb on + strand, within Psyr_2795at 3378.801 kb on + strand, within Psyr_2795at 3378.801 kb on + strand, within Psyr_2795at 3378.802 kb on - strand, within Psyr_2795at 3378.802 kb on - strand, within Psyr_2795at 3378.802 kb on - strand, within Psyr_2795at 3378.802 kb on - strand, within Psyr_2795at 3378.802 kb on - strand, within Psyr_2795at 3378.802 kb on - strand, within Psyr_2795at 3378.802 kb on - strand, within Psyr_2795at 3378.802 kb on - strand, within Psyr_2795at 3378.802 kb on - strand, within Psyr_2795at 3378.802 kb on - strand, within Psyr_2795at 3378.802 kb on - strand, within Psyr_2795at 3378.802 kb on - strand, within Psyr_2795at 3378.802 kb on - strand, within Psyr_2795at 3378.805 kb on + strand, within Psyr_2795at 3379.159 kb on + strandat 3379.159 kb on + strandat 3379.160 kb on - strandat 3379.160 kb on - strandat 3379.175 kb on + strandat 3379.230 kb on + strandat 3379.231 kb on - strandat 3379.231 kb on - strandat 3379.231 kb on - strandat 3379.231 kb on - strandat 3379.232 kb on + strandat 3379.232 kb on + strandat 3379.241 kb on + strandat 3379.242 kb on - strandat 3379.242 kb on - strandat 3379.242 kb on - strandat 3379.474 kb on + strand, within Psyr_2796at 3379.498 kb on + strand, within Psyr_2796at 3379.498 kb on + strand, within Psyr_2796at 3379.498 kb on + strand, within Psyr_2796at 3379.498 kb on + strand, within Psyr_2796at 3379.498 kb on + strand, within Psyr_2796at 3379.498 kb on + strand, within Psyr_2796at 3379.499 kb on - strand, within Psyr_2796at 3379.499 kb on - strand, within Psyr_2796at 3379.499 kb on - strand, within Psyr_2796at 3379.499 kb on - strand, within Psyr_2796at 3379.499 kb on - strand, within Psyr_2796at 3379.506 kb on + strand, within Psyr_2796at 3379.507 kb on - strand, within Psyr_2796at 3379.507 kb on - strand, within Psyr_2796at 3379.728 kb on + strand, within Psyr_2796at 3379.729 kb on - strand, within Psyr_2796at 3379.883 kb on + strandat 3379.897 kb on - strandat 3379.908 kb on - strand, within Psyr_2797at 3379.975 kb on + strand, within Psyr_2797at 3379.976 kb on - strand, within Psyr_2797at 3380.090 kb on - strand, within Psyr_2797at 3380.105 kb on - strand, within Psyr_2797at 3380.134 kb on + strand, within Psyr_2797

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
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3,377,742 + Psyr_2794 0.25 +2.1
3,377,743 - Psyr_2794 0.26 +1.6
3,377,743 - Psyr_2794 0.26 +1.3
3,377,795 + Psyr_2794 0.30 +4.7
3,377,795 + Psyr_2794 0.30 -0.7
3,377,795 + Psyr_2794 0.30 +1.2
3,377,795 + Psyr_2794 0.30 +5.1
3,377,795 + Psyr_2794 0.30 +1.2
3,377,795 + -0.7
3,377,796 - Psyr_2794 0.30 +3.1
3,377,796 - Psyr_2794 0.30 +2.4
3,377,799 + Psyr_2794 0.30 +0.8
3,378,012 - Psyr_2794 0.46 +1.3
3,378,020 + Psyr_2794 0.47 -1.8
3,378,020 + Psyr_2794 0.47 +2.9
3,378,063 - Psyr_2794 0.50 +4.9
3,378,086 + Psyr_2794 0.52 +3.9
3,378,110 + Psyr_2794 0.54 +1.3
3,378,110 + Psyr_2794 0.54 +3.1
3,378,111 - Psyr_2794 0.54 +2.6
3,378,111 - Psyr_2794 0.54 +0.1
3,378,164 + Psyr_2794 0.58 +4.8
3,378,164 + Psyr_2794 0.58 +4.6
3,378,164 + Psyr_2794 0.58 +4.6
3,378,165 - Psyr_2794 0.58 -0.3
3,378,165 - Psyr_2794 0.58 +1.8
3,378,165 - Psyr_2794 0.58 +5.8
3,378,165 - Psyr_2794 0.58 +4.7
3,378,281 + Psyr_2794 0.67 +1.0
3,378,429 - Psyr_2794 0.78 +3.2
3,378,443 + Psyr_2794 0.79 +4.2
3,378,443 + Psyr_2794 0.79 +4.9
3,378,443 + Psyr_2794 0.79 -0.9
3,378,443 + Psyr_2794 0.79 +5.6
3,378,444 - Psyr_2794 0.79 +0.6
3,378,444 - Psyr_2794 0.79 +2.6
3,378,444 - Psyr_2794 0.79 +5.5
3,378,444 - Psyr_2794 0.79 +3.9
3,378,497 + Psyr_2794 0.83 -1.8
3,378,498 - Psyr_2794 0.84 +4.4
3,378,498 - Psyr_2794 0.84 -1.0
3,378,546 - Psyr_2794 0.87 +1.7
3,378,560 + Psyr_2794 0.88 +4.7
3,378,561 - Psyr_2794 0.88 +0.6
3,378,700 - +2.2
3,378,731 + +1.0
3,378,732 - +0.7
3,378,732 - +5.7
3,378,801 + Psyr_2795 0.22 +1.9
3,378,801 + Psyr_2795 0.22 +1.9
3,378,801 + Psyr_2795 0.22 +4.0
3,378,801 + Psyr_2795 0.22 +3.6
3,378,801 + Psyr_2795 0.22 +2.7
3,378,801 + Psyr_2795 0.22 +1.0
3,378,801 + Psyr_2795 0.22 +3.0
3,378,801 + Psyr_2795 0.22 +4.9
3,378,801 + Psyr_2795 0.22 -0.2
3,378,802 - Psyr_2795 0.23 -0.2
3,378,802 - Psyr_2795 0.23 +1.6
3,378,802 - Psyr_2795 0.23 +1.5
3,378,802 - Psyr_2795 0.23 +5.1
3,378,802 - Psyr_2795 0.23 -0.3
3,378,802 - Psyr_2795 0.23 +2.1
3,378,802 - Psyr_2795 0.23 +4.9
3,378,802 - Psyr_2795 0.23 +0.5
3,378,802 - Psyr_2795 0.23 +5.6
3,378,802 - Psyr_2795 0.23 +2.5
3,378,802 - Psyr_2795 0.23 +1.3
3,378,802 - Psyr_2795 0.23 +3.4
3,378,802 - Psyr_2795 0.23 +5.7
3,378,805 + Psyr_2795 0.23 +0.4
3,379,159 + +0.3
3,379,159 + +4.6
3,379,160 - -1.2
3,379,160 - +1.0
3,379,175 + +1.4
3,379,230 + +1.6
3,379,231 - -1.1
3,379,231 - +0.8
3,379,231 - +2.6
3,379,231 - +6.1
3,379,232 + -2.5
3,379,232 + -1.5
3,379,241 + +3.3
3,379,242 - +2.2
3,379,242 - +3.1
3,379,242 - +1.8
3,379,474 + Psyr_2796 0.45 +6.0
3,379,498 + Psyr_2796 0.49 +5.1
3,379,498 + Psyr_2796 0.49 +4.0
3,379,498 + Psyr_2796 0.49 +1.5
3,379,498 + Psyr_2796 0.49 -0.4
3,379,498 + Psyr_2796 0.49 +6.5
3,379,498 + Psyr_2796 0.49 +5.2
3,379,499 - Psyr_2796 0.49 +2.6
3,379,499 - Psyr_2796 0.49 -0.9
3,379,499 - Psyr_2796 0.49 +2.4
3,379,499 - Psyr_2796 0.49 -0.1
3,379,499 - Psyr_2796 0.49 +4.7
3,379,506 + Psyr_2796 0.50 +2.1
3,379,507 - Psyr_2796 0.51 -0.4
3,379,507 - Psyr_2796 0.51 +3.8
3,379,728 + Psyr_2796 0.86 +1.9
3,379,729 - Psyr_2796 0.86 +2.9
3,379,883 + -0.3
3,379,897 - +5.5
3,379,908 - Psyr_2797 0.10 +6.8
3,379,975 + Psyr_2797 0.24 +2.1
3,379,976 - Psyr_2797 0.24 +2.1
3,380,090 - Psyr_2797 0.46 +4.9
3,380,105 - Psyr_2797 0.49 +5.6
3,380,134 + Psyr_2797 0.55 -3.7

Or see this region's nucleotide sequence