Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2782

Experiment: KB with Mitomycin C 0.625 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_2780 and Psyr_2781 are separated by 10 nucleotidesPsyr_2781 and Psyr_2782 are separated by 62 nucleotidesPsyr_2782 and Psyr_2783 are separated by 3 nucleotidesPsyr_2783 and Psyr_2784 are separated by 71 nucleotides Psyr_2780: Psyr_2780 - Phage tail tape measure protein lambda, at 3,364,992 to 3,368,477 _2780 Psyr_2781: Psyr_2781 - hypothetical protein, at 3,368,488 to 3,368,736 _2781 Psyr_2782: Psyr_2782 - hypothetical protein, at 3,368,799 to 3,369,182 _2782 Psyr_2783: Psyr_2783 - conserved hypothetical protein, at 3,369,186 to 3,369,842 _2783 Psyr_2784: Psyr_2784 - phage-related conserved hypothetical protein, at 3,369,914 to 3,370,324 _2784 Position (kb) 3368 3369 3370Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7at 3367.922 kb on + strand, within Psyr_2780at 3367.951 kb on + strand, within Psyr_2780at 3368.003 kb on + strand, within Psyr_2780at 3368.003 kb on + strand, within Psyr_2780at 3368.003 kb on + strand, within Psyr_2780at 3368.003 kb on + strand, within Psyr_2780at 3368.004 kb on - strand, within Psyr_2780at 3368.210 kb on + strandat 3368.210 kb on + strandat 3368.211 kb on - strandat 3368.557 kb on + strand, within Psyr_2781at 3368.557 kb on + strand, within Psyr_2781at 3368.558 kb on - strand, within Psyr_2781at 3368.609 kb on + strand, within Psyr_2781at 3368.610 kb on - strand, within Psyr_2781at 3368.777 kb on + strandat 3368.777 kb on + strandat 3368.837 kb on - strandat 3368.980 kb on - strand, within Psyr_2782at 3369.039 kb on - strand, within Psyr_2782at 3369.039 kb on - strand, within Psyr_2782at 3369.080 kb on + strand, within Psyr_2782at 3369.080 kb on + strand, within Psyr_2782at 3369.082 kb on + strand, within Psyr_2782at 3369.082 kb on + strand, within Psyr_2782at 3369.082 kb on + strand, within Psyr_2782at 3369.082 kb on + strand, within Psyr_2782at 3369.082 kb on + strand, within Psyr_2782at 3369.082 kb on + strand, within Psyr_2782at 3369.082 kb on + strand, within Psyr_2782at 3369.082 kb on + strand, within Psyr_2782at 3369.082 kb on + strand, within Psyr_2782at 3369.082 kb on + strand, within Psyr_2782at 3369.082 kb on + strand, within Psyr_2782at 3369.082 kb on + strand, within Psyr_2782at 3369.083 kb on - strand, within Psyr_2782at 3369.083 kb on - strand, within Psyr_2782at 3369.083 kb on - strand, within Psyr_2782at 3369.083 kb on - strand, within Psyr_2782at 3369.083 kb on - strand, within Psyr_2782at 3369.083 kb on - strand, within Psyr_2782at 3369.083 kb on - strand, within Psyr_2782at 3369.295 kb on + strand, within Psyr_2783at 3369.296 kb on - strand, within Psyr_2783at 3369.304 kb on + strand, within Psyr_2783at 3369.304 kb on + strand, within Psyr_2783at 3369.305 kb on - strand, within Psyr_2783at 3369.388 kb on + strand, within Psyr_2783at 3369.388 kb on + strand, within Psyr_2783at 3369.388 kb on + strand, within Psyr_2783at 3369.389 kb on - strand, within Psyr_2783at 3369.389 kb on - strand, within Psyr_2783at 3369.389 kb on - strand, within Psyr_2783at 3369.389 kb on - strand, within Psyr_2783at 3369.915 kb on + strandat 3369.915 kb on + strandat 3369.915 kb on + strandat 3369.916 kb on - strandat 3369.916 kb on - strandat 3369.916 kb on - strandat 3369.916 kb on - strandat 3369.961 kb on + strand, within Psyr_2784at 3369.961 kb on + strand, within Psyr_2784at 3370.041 kb on + strand, within Psyr_2784at 3370.042 kb on - strand, within Psyr_2784at 3370.140 kb on + strand, within Psyr_2784at 3370.140 kb on + strand, within Psyr_2784at 3370.140 kb on + strand, within Psyr_2784at 3370.141 kb on - strand, within Psyr_2784at 3370.141 kb on - strand, within Psyr_2784

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
remove
3,367,922 + Psyr_2780 0.84 +5.5
3,367,951 + Psyr_2780 0.85 +4.2
3,368,003 + Psyr_2780 0.86 +1.0
3,368,003 + Psyr_2780 0.86 +0.3
3,368,003 + Psyr_2780 0.86 +1.9
3,368,003 + Psyr_2780 0.86 +1.7
3,368,004 - Psyr_2780 0.86 +1.7
3,368,210 + +4.2
3,368,210 + +3.0
3,368,211 - +5.2
3,368,557 + Psyr_2781 0.28 +2.5
3,368,557 + Psyr_2781 0.28 +2.3
3,368,558 - Psyr_2781 0.28 +3.4
3,368,609 + Psyr_2781 0.49 +2.8
3,368,610 - Psyr_2781 0.49 +2.5
3,368,777 + +0.6
3,368,777 + +0.3
3,368,837 - +4.9
3,368,980 - Psyr_2782 0.47 +0.8
3,369,039 - Psyr_2782 0.62 +5.7
3,369,039 - Psyr_2782 0.62 +1.6
3,369,080 + Psyr_2782 0.73 +1.5
3,369,080 + Psyr_2782 0.73 +1.2
3,369,082 + Psyr_2782 0.74 +0.5
3,369,082 + Psyr_2782 0.74 +2.3
3,369,082 + Psyr_2782 0.74 +0.2
3,369,082 + Psyr_2782 0.74 +0.7
3,369,082 + Psyr_2782 0.74 +4.3
3,369,082 + Psyr_2782 0.74 +2.3
3,369,082 + Psyr_2782 0.74 +3.1
3,369,082 + Psyr_2782 0.74 +5.5
3,369,082 + Psyr_2782 0.74 +4.0
3,369,082 + Psyr_2782 0.74 +5.6
3,369,082 + Psyr_2782 0.74 +4.7
3,369,082 + Psyr_2782 0.74 +5.4
3,369,083 - Psyr_2782 0.74 +6.6
3,369,083 - Psyr_2782 0.74 +1.4
3,369,083 - Psyr_2782 0.74 +7.5
3,369,083 - Psyr_2782 0.74 +3.3
3,369,083 - Psyr_2782 0.74 +3.4
3,369,083 - Psyr_2782 0.74 +5.8
3,369,083 - Psyr_2782 0.74 +5.2
3,369,295 + Psyr_2783 0.17 +3.0
3,369,296 - Psyr_2783 0.17 +2.2
3,369,304 + Psyr_2783 0.18 +2.9
3,369,304 + Psyr_2783 0.18 +2.0
3,369,305 - Psyr_2783 0.18 +1.7
3,369,388 + Psyr_2783 0.31 +5.2
3,369,388 + Psyr_2783 0.31 +6.5
3,369,388 + Psyr_2783 0.31 +5.7
3,369,389 - Psyr_2783 0.31 +3.6
3,369,389 - Psyr_2783 0.31 +7.0
3,369,389 - Psyr_2783 0.31 +5.6
3,369,389 - Psyr_2783 0.31 +1.9
3,369,915 + +5.5
3,369,915 + +0.6
3,369,915 + +3.5
3,369,916 - +1.5
3,369,916 - +0.1
3,369,916 - +4.8
3,369,916 - +0.8
3,369,961 + Psyr_2784 0.11 +2.2
3,369,961 + Psyr_2784 0.11 +0.6
3,370,041 + Psyr_2784 0.31 +3.1
3,370,042 - Psyr_2784 0.31 +0.8
3,370,140 + Psyr_2784 0.55 +0.8
3,370,140 + Psyr_2784 0.55 +3.8
3,370,140 + Psyr_2784 0.55 +0.4
3,370,141 - Psyr_2784 0.55 +2.2
3,370,141 - Psyr_2784 0.55 +2.5

Or see this region's nucleotide sequence