Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2771

Experiment: KB with Mitomycin C 0.625 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_2770 and Psyr_2771 are separated by 25 nucleotidesPsyr_2771 and Psyr_2772 are separated by 316 nucleotides Psyr_2770: Psyr_2770 - tail fiber domain protein, at 3,354,775 to 3,355,878 _2770 Psyr_2771: Psyr_2771 - conserved domain protein, at 3,355,904 to 3,356,590 _2771 Psyr_2772: Psyr_2772 - Fibronectin, type III, at 3,356,907 to 3,360,491 _2772 Position (kb) 3355 3356 3357Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6 7at 3354.904 kb on - strand, within Psyr_2770at 3354.904 kb on - strand, within Psyr_2770at 3354.981 kb on - strand, within Psyr_2770at 3355.096 kb on + strand, within Psyr_2770at 3355.097 kb on - strand, within Psyr_2770at 3355.160 kb on + strand, within Psyr_2770at 3355.160 kb on + strand, within Psyr_2770at 3355.161 kb on - strand, within Psyr_2770at 3355.175 kb on - strand, within Psyr_2770at 3355.297 kb on - strand, within Psyr_2770at 3355.300 kb on + strand, within Psyr_2770at 3355.301 kb on - strand, within Psyr_2770at 3355.301 kb on - strand, within Psyr_2770at 3355.324 kb on - strand, within Psyr_2770at 3355.340 kb on - strand, within Psyr_2770at 3355.395 kb on + strand, within Psyr_2770at 3355.593 kb on + strand, within Psyr_2770at 3355.700 kb on + strand, within Psyr_2770at 3355.701 kb on - strand, within Psyr_2770at 3355.751 kb on + strand, within Psyr_2770at 3355.751 kb on + strand, within Psyr_2770at 3355.869 kb on - strandat 3356.010 kb on + strand, within Psyr_2771at 3356.010 kb on + strand, within Psyr_2771at 3356.011 kb on - strand, within Psyr_2771at 3356.069 kb on + strand, within Psyr_2771at 3356.070 kb on - strand, within Psyr_2771at 3356.070 kb on - strand, within Psyr_2771at 3356.074 kb on - strand, within Psyr_2771at 3356.106 kb on + strand, within Psyr_2771at 3356.109 kb on + strand, within Psyr_2771at 3356.208 kb on - strand, within Psyr_2771at 3356.239 kb on + strand, within Psyr_2771at 3356.328 kb on + strand, within Psyr_2771at 3356.328 kb on + strand, within Psyr_2771at 3356.328 kb on + strand, within Psyr_2771at 3356.328 kb on + strand, within Psyr_2771at 3356.328 kb on + strand, within Psyr_2771at 3356.328 kb on + strand, within Psyr_2771at 3356.329 kb on - strand, within Psyr_2771at 3356.329 kb on - strand, within Psyr_2771at 3356.329 kb on - strand, within Psyr_2771at 3356.329 kb on - strand, within Psyr_2771at 3356.357 kb on + strand, within Psyr_2771at 3356.393 kb on + strand, within Psyr_2771at 3356.394 kb on - strand, within Psyr_2771at 3356.454 kb on + strand, within Psyr_2771at 3356.455 kb on - strand, within Psyr_2771at 3356.455 kb on - strand, within Psyr_2771at 3356.485 kb on + strand, within Psyr_2771at 3356.486 kb on - strand, within Psyr_2771at 3356.486 kb on - strand, within Psyr_2771at 3356.544 kb on - strandat 3356.605 kb on - strandat 3356.619 kb on + strandat 3356.619 kb on + strandat 3356.619 kb on + strandat 3356.649 kb on - strandat 3356.667 kb on - strandat 3356.715 kb on + strandat 3356.716 kb on - strandat 3356.723 kb on + strandat 3356.724 kb on - strandat 3356.724 kb on - strandat 3356.724 kb on - strandat 3356.817 kb on + strandat 3356.957 kb on - strandat 3357.067 kb on + strandat 3357.067 kb on + strandat 3357.067 kb on + strandat 3357.067 kb on + strandat 3357.068 kb on - strandat 3357.094 kb on - strandat 3357.178 kb on - strandat 3357.180 kb on - strandat 3357.180 kb on - strandat 3357.201 kb on - strandat 3357.292 kb on + strand, within Psyr_2772at 3357.292 kb on + strand, within Psyr_2772at 3357.292 kb on + strand, within Psyr_2772at 3357.293 kb on - strand, within Psyr_2772at 3357.293 kb on - strand, within Psyr_2772at 3357.293 kb on - strand, within Psyr_2772at 3357.293 kb on - strand, within Psyr_2772at 3357.361 kb on + strand, within Psyr_2772at 3357.410 kb on + strand, within Psyr_2772at 3357.458 kb on + strand, within Psyr_2772at 3357.459 kb on - strand, within Psyr_2772at 3357.480 kb on + strand, within Psyr_2772at 3357.480 kb on + strand, within Psyr_2772at 3357.480 kb on + strand, within Psyr_2772at 3357.481 kb on - strand, within Psyr_2772

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
remove
3,354,904 - Psyr_2770 0.12 +2.8
3,354,904 - Psyr_2770 0.12 +2.6
3,354,981 - Psyr_2770 0.19 +1.3
3,355,096 + Psyr_2770 0.29 +4.5
3,355,097 - Psyr_2770 0.29 +1.0
3,355,160 + Psyr_2770 0.35 +4.9
3,355,160 + Psyr_2770 0.35 +5.3
3,355,161 - Psyr_2770 0.35 +0.2
3,355,175 - Psyr_2770 0.36 +4.5
3,355,297 - Psyr_2770 0.47 +1.3
3,355,300 + Psyr_2770 0.48 +1.3
3,355,301 - Psyr_2770 0.48 -0.0
3,355,301 - Psyr_2770 0.48 +5.2
3,355,324 - Psyr_2770 0.50 +0.8
3,355,340 - Psyr_2770 0.51 +2.1
3,355,395 + Psyr_2770 0.56 -0.8
3,355,593 + Psyr_2770 0.74 +0.5
3,355,700 + Psyr_2770 0.84 +2.2
3,355,701 - Psyr_2770 0.84 +7.0
3,355,751 + Psyr_2770 0.88 +2.9
3,355,751 + Psyr_2770 0.88 -4.6
3,355,869 - +3.3
3,356,010 + Psyr_2771 0.15 +3.3
3,356,010 + Psyr_2771 0.15 +3.3
3,356,011 - Psyr_2771 0.16 +2.9
3,356,069 + Psyr_2771 0.24 +3.2
3,356,070 - Psyr_2771 0.24 +5.7
3,356,070 - Psyr_2771 0.24 +1.1
3,356,074 - Psyr_2771 0.25 +1.6
3,356,106 + Psyr_2771 0.29 +5.5
3,356,109 + Psyr_2771 0.30 +4.2
3,356,208 - Psyr_2771 0.44 +0.9
3,356,239 + Psyr_2771 0.49 +1.7
3,356,328 + Psyr_2771 0.62 -0.2
3,356,328 + Psyr_2771 0.62 +6.0
3,356,328 + Psyr_2771 0.62 +2.1
3,356,328 + Psyr_2771 0.62 +6.2
3,356,328 + Psyr_2771 0.62 +3.0
3,356,328 + Psyr_2771 0.62 +0.6
3,356,329 - Psyr_2771 0.62 +1.6
3,356,329 - Psyr_2771 0.62 +3.4
3,356,329 - Psyr_2771 0.62 +1.9
3,356,329 - Psyr_2771 0.62 -0.3
3,356,357 + Psyr_2771 0.66 +4.0
3,356,393 + Psyr_2771 0.71 +5.6
3,356,394 - Psyr_2771 0.71 +1.2
3,356,454 + Psyr_2771 0.80 +1.0
3,356,455 - Psyr_2771 0.80 +1.5
3,356,455 - Psyr_2771 0.80 +0.7
3,356,485 + Psyr_2771 0.85 +0.6
3,356,486 - Psyr_2771 0.85 +1.2
3,356,486 - Psyr_2771 0.85 +1.8
3,356,544 - +1.0
3,356,605 - +3.0
3,356,619 + +1.3
3,356,619 + -0.9
3,356,619 + +4.3
3,356,649 - +5.3
3,356,667 - +2.0
3,356,715 + +7.2
3,356,716 - +0.1
3,356,723 + +4.5
3,356,724 - +4.4
3,356,724 - -0.0
3,356,724 - +1.6
3,356,817 + +4.9
3,356,957 - +0.9
3,357,067 + +1.6
3,357,067 + +4.5
3,357,067 + +0.7
3,357,067 + +5.8
3,357,068 - +2.1
3,357,094 - +0.1
3,357,178 - +0.8
3,357,180 - +0.1
3,357,180 - +1.5
3,357,201 - +2.2
3,357,292 + Psyr_2772 0.11 +1.7
3,357,292 + Psyr_2772 0.11 -1.2
3,357,292 + Psyr_2772 0.11 +1.2
3,357,293 - Psyr_2772 0.11 +2.2
3,357,293 - Psyr_2772 0.11 +3.5
3,357,293 - Psyr_2772 0.11 +1.8
3,357,293 - Psyr_2772 0.11 +1.5
3,357,361 + Psyr_2772 0.13 +0.8
3,357,410 + Psyr_2772 0.14 +1.0
3,357,458 + Psyr_2772 0.15 +1.5
3,357,459 - Psyr_2772 0.15 +6.0
3,357,480 + Psyr_2772 0.16 +3.7
3,357,480 + Psyr_2772 0.16 +1.2
3,357,480 + Psyr_2772 0.16 -1.2
3,357,481 - Psyr_2772 0.16 +1.3

Or see this region's nucleotide sequence