Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2762

Experiment: KB with Mitomycin C 0.625 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2761 and Psyr_2762 overlap by 14 nucleotidesPsyr_2762 and Psyr_2763 are separated by 121 nucleotidesPsyr_2763 and Psyr_2764 are separated by 28 nucleotides Psyr_2761: Psyr_2761 - DNA-directed DNA polymerase, at 3,348,722 to 3,350,002 _2761 Psyr_2762: Psyr_2762 - Peptidase S24, S26A and S26B, at 3,349,989 to 3,350,420 _2762 Psyr_2763: Psyr_2763 - Protein of unknown function DUF159, at 3,350,542 to 3,351,231 _2763 Psyr_2764: Psyr_2764 - conserved hypothetical protein, at 3,351,260 to 3,352,504 _2764 Position (kb) 3349 3350 3351Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6 7at 3349.084 kb on - strand, within Psyr_2761at 3349.084 kb on - strand, within Psyr_2761at 3349.087 kb on + strand, within Psyr_2761at 3349.087 kb on + strand, within Psyr_2761at 3349.087 kb on + strand, within Psyr_2761at 3349.088 kb on - strand, within Psyr_2761at 3349.088 kb on - strand, within Psyr_2761at 3349.108 kb on + strand, within Psyr_2761at 3349.108 kb on + strand, within Psyr_2761at 3349.108 kb on + strand, within Psyr_2761at 3349.108 kb on + strand, within Psyr_2761at 3349.108 kb on + strand, within Psyr_2761at 3349.108 kb on + strand, within Psyr_2761at 3349.108 kb on + strand, within Psyr_2761at 3349.108 kb on + strand, within Psyr_2761at 3349.108 kb on + strand, within Psyr_2761at 3349.109 kb on - strand, within Psyr_2761at 3349.109 kb on - strand, within Psyr_2761at 3349.109 kb on - strand, within Psyr_2761at 3349.109 kb on - strand, within Psyr_2761at 3349.109 kb on - strand, within Psyr_2761at 3349.109 kb on - strand, within Psyr_2761at 3349.185 kb on + strand, within Psyr_2761at 3349.185 kb on + strand, within Psyr_2761at 3349.186 kb on - strand, within Psyr_2761at 3349.186 kb on - strand, within Psyr_2761at 3349.352 kb on + strand, within Psyr_2761at 3349.409 kb on + strand, within Psyr_2761at 3349.409 kb on + strand, within Psyr_2761at 3349.409 kb on + strand, within Psyr_2761at 3349.409 kb on + strand, within Psyr_2761at 3349.410 kb on - strand, within Psyr_2761at 3349.410 kb on - strand, within Psyr_2761at 3349.410 kb on - strand, within Psyr_2761at 3349.459 kb on + strand, within Psyr_2761at 3349.459 kb on + strand, within Psyr_2761at 3349.459 kb on + strand, within Psyr_2761at 3349.460 kb on - strand, within Psyr_2761at 3349.460 kb on - strand, within Psyr_2761at 3349.460 kb on - strand, within Psyr_2761at 3349.460 kb on - strand, within Psyr_2761at 3349.595 kb on + strand, within Psyr_2761at 3349.595 kb on + strand, within Psyr_2761at 3349.596 kb on - strand, within Psyr_2761at 3349.598 kb on - strand, within Psyr_2761at 3349.693 kb on + strand, within Psyr_2761at 3349.694 kb on - strand, within Psyr_2761at 3349.694 kb on - strand, within Psyr_2761at 3349.695 kb on + strand, within Psyr_2761at 3349.696 kb on - strand, within Psyr_2761at 3349.759 kb on - strand, within Psyr_2761at 3349.767 kb on + strand, within Psyr_2761at 3349.767 kb on + strand, within Psyr_2761at 3349.767 kb on + strand, within Psyr_2761at 3349.768 kb on - strand, within Psyr_2761at 3349.768 kb on - strand, within Psyr_2761at 3349.768 kb on - strand, within Psyr_2761at 3349.824 kb on + strand, within Psyr_2761at 3349.860 kb on + strand, within Psyr_2761at 3349.860 kb on + strand, within Psyr_2761at 3349.860 kb on + strand, within Psyr_2761at 3349.861 kb on - strand, within Psyr_2761at 3349.892 kb on - strandat 3349.902 kb on - strandat 3349.902 kb on - strandat 3349.902 kb on - strandat 3349.953 kb on + strandat 3350.018 kb on - strandat 3350.112 kb on - strand, within Psyr_2762at 3350.112 kb on - strand, within Psyr_2762at 3350.112 kb on - strand, within Psyr_2762at 3350.166 kb on - strand, within Psyr_2762at 3350.196 kb on + strand, within Psyr_2762at 3350.197 kb on - strand, within Psyr_2762at 3350.217 kb on - strand, within Psyr_2762at 3350.255 kb on + strand, within Psyr_2762at 3350.263 kb on + strand, within Psyr_2762at 3350.304 kb on + strand, within Psyr_2762at 3350.304 kb on + strand, within Psyr_2762at 3350.304 kb on + strand, within Psyr_2762at 3350.305 kb on - strand, within Psyr_2762at 3350.306 kb on + strand, within Psyr_2762at 3350.306 kb on + strand, within Psyr_2762at 3350.306 kb on + strand, within Psyr_2762at 3350.306 kb on + strand, within Psyr_2762at 3350.306 kb on + strand, within Psyr_2762at 3350.306 kb on + strand, within Psyr_2762at 3350.306 kb on + strand, within Psyr_2762at 3350.306 kb on + strand, within Psyr_2762at 3350.306 kb on + strand, within Psyr_2762at 3350.306 kb on + strand, within Psyr_2762at 3350.306 kb on + strand, within Psyr_2762at 3350.306 kb on + strand, within Psyr_2762at 3350.306 kb on + strand, within Psyr_2762at 3350.306 kb on + strand, within Psyr_2762at 3350.307 kb on - strand, within Psyr_2762at 3350.307 kb on - strand, within Psyr_2762at 3350.307 kb on - strand, within Psyr_2762at 3350.307 kb on - strand, within Psyr_2762at 3350.307 kb on - strand, within Psyr_2762at 3350.307 kb on - strand, within Psyr_2762at 3350.307 kb on - strand, within Psyr_2762at 3350.307 kb on - strand, within Psyr_2762at 3350.307 kb on - strand, within Psyr_2762at 3350.307 kb on - strand, within Psyr_2762at 3350.307 kb on - strand, within Psyr_2762at 3350.307 kb on - strand, within Psyr_2762at 3350.307 kb on - strand, within Psyr_2762at 3350.307 kb on - strand, within Psyr_2762at 3350.307 kb on - strand, within Psyr_2762at 3350.307 kb on - strand, within Psyr_2762at 3350.307 kb on - strand, within Psyr_2762at 3350.353 kb on - strand, within Psyr_2762at 3350.407 kb on + strandat 3350.407 kb on + strandat 3350.408 kb on - strandat 3350.581 kb on + strandat 3350.581 kb on + strandat 3350.585 kb on + strandat 3350.585 kb on + strandat 3350.586 kb on - strandat 3350.647 kb on + strand, within Psyr_2763at 3350.648 kb on - strand, within Psyr_2763at 3350.648 kb on - strand, within Psyr_2763at 3350.648 kb on - strand, within Psyr_2763at 3350.902 kb on + strand, within Psyr_2763at 3350.902 kb on + strand, within Psyr_2763at 3350.902 kb on + strand, within Psyr_2763at 3350.902 kb on + strand, within Psyr_2763at 3350.902 kb on + strand, within Psyr_2763at 3350.903 kb on - strand, within Psyr_2763at 3350.903 kb on - strand, within Psyr_2763at 3350.903 kb on - strand, within Psyr_2763at 3351.000 kb on + strand, within Psyr_2763at 3351.001 kb on - strand, within Psyr_2763at 3351.035 kb on + strand, within Psyr_2763at 3351.035 kb on + strand, within Psyr_2763at 3351.035 kb on + strand, within Psyr_2763at 3351.035 kb on + strand, within Psyr_2763at 3351.036 kb on - strand, within Psyr_2763at 3351.036 kb on - strand, within Psyr_2763at 3351.122 kb on + strand, within Psyr_2763at 3351.122 kb on + strand, within Psyr_2763at 3351.123 kb on - strand, within Psyr_2763at 3351.138 kb on + strand, within Psyr_2763at 3351.139 kb on - strand, within Psyr_2763at 3351.163 kb on + strandat 3351.163 kb on + strandat 3351.164 kb on - strandat 3351.164 kb on - strandat 3351.166 kb on - strandat 3351.166 kb on - strandat 3351.166 kb on - strandat 3351.166 kb on - strandat 3351.216 kb on - strandat 3351.230 kb on - strandat 3351.237 kb on + strandat 3351.327 kb on + strandat 3351.327 kb on + strandat 3351.327 kb on + strandat 3351.329 kb on + strandat 3351.329 kb on + strandat 3351.329 kb on + strandat 3351.330 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
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3,349,084 - Psyr_2761 0.28 +2.4
3,349,084 - Psyr_2761 0.28 +0.7
3,349,087 + Psyr_2761 0.28 +6.3
3,349,087 + Psyr_2761 0.28 +5.2
3,349,087 + Psyr_2761 0.28 +0.3
3,349,088 - Psyr_2761 0.29 +6.0
3,349,088 - Psyr_2761 0.29 +4.6
3,349,108 + Psyr_2761 0.30 +1.9
3,349,108 + Psyr_2761 0.30 +4.0
3,349,108 + Psyr_2761 0.30 +1.4
3,349,108 + Psyr_2761 0.30 -0.1
3,349,108 + Psyr_2761 0.30 +2.0
3,349,108 + Psyr_2761 0.30 +2.9
3,349,108 + Psyr_2761 0.30 +1.1
3,349,108 + Psyr_2761 0.30 +5.1
3,349,108 + Psyr_2761 0.30 -0.4
3,349,109 - Psyr_2761 0.30 +7.0
3,349,109 - Psyr_2761 0.30 +2.7
3,349,109 - Psyr_2761 0.30 +0.5
3,349,109 - Psyr_2761 0.30 +2.7
3,349,109 - Psyr_2761 0.30 +5.9
3,349,109 - Psyr_2761 0.30 +2.8
3,349,185 + Psyr_2761 0.36 +1.4
3,349,185 + Psyr_2761 0.36 +0.9
3,349,186 - Psyr_2761 0.36 +4.5
3,349,186 - Psyr_2761 0.36 +5.6
3,349,352 + Psyr_2761 0.49 +2.6
3,349,409 + Psyr_2761 0.54 -4.6
3,349,409 + Psyr_2761 0.54 +1.4
3,349,409 + Psyr_2761 0.54 +3.8
3,349,409 + Psyr_2761 0.54 +4.1
3,349,410 - Psyr_2761 0.54 +6.6
3,349,410 - Psyr_2761 0.54 +2.6
3,349,410 - Psyr_2761 0.54 +3.8
3,349,459 + Psyr_2761 0.58 +5.9
3,349,459 + Psyr_2761 0.58 +5.1
3,349,459 + Psyr_2761 0.58 +4.9
3,349,460 - Psyr_2761 0.58 +2.6
3,349,460 - Psyr_2761 0.58 +5.2
3,349,460 - Psyr_2761 0.58 +0.2
3,349,460 - Psyr_2761 0.58 +6.1
3,349,595 + Psyr_2761 0.68 +4.4
3,349,595 + Psyr_2761 0.68 +5.8
3,349,596 - Psyr_2761 0.68 +1.1
3,349,598 - Psyr_2761 0.68 +4.3
3,349,693 + Psyr_2761 0.76 +1.9
3,349,694 - Psyr_2761 0.76 +6.3
3,349,694 - Psyr_2761 0.76 +6.9
3,349,695 + Psyr_2761 0.76 +4.4
3,349,696 - Psyr_2761 0.76 +0.3
3,349,759 - Psyr_2761 0.81 +2.8
3,349,767 + Psyr_2761 0.82 +2.1
3,349,767 + Psyr_2761 0.82 +5.2
3,349,767 + Psyr_2761 0.82 +1.6
3,349,768 - Psyr_2761 0.82 +4.9
3,349,768 - Psyr_2761 0.82 +2.7
3,349,768 - Psyr_2761 0.82 +7.1
3,349,824 + Psyr_2761 0.86 +4.4
3,349,860 + Psyr_2761 0.89 +4.2
3,349,860 + Psyr_2761 0.89 +3.3
3,349,860 + Psyr_2761 0.89 +1.0
3,349,861 - Psyr_2761 0.89 -0.5
3,349,892 - +4.5
3,349,902 - +2.8
3,349,902 - +6.7
3,349,902 - +1.0
3,349,953 + +1.3
3,350,018 - +1.7
3,350,112 - Psyr_2762 0.28 +3.0
3,350,112 - Psyr_2762 0.28 +5.6
3,350,112 - Psyr_2762 0.28 +0.2
3,350,166 - Psyr_2762 0.41 +4.2
3,350,196 + Psyr_2762 0.48 +4.7
3,350,197 - Psyr_2762 0.48 +4.4
3,350,217 - Psyr_2762 0.53 +5.7
3,350,255 + Psyr_2762 0.62 +3.8
3,350,263 + Psyr_2762 0.63 +3.2
3,350,304 + Psyr_2762 0.73 +1.3
3,350,304 + Psyr_2762 0.73 +3.9
3,350,304 + Psyr_2762 0.73 +3.0
3,350,305 - Psyr_2762 0.73 +0.9
3,350,306 + Psyr_2762 0.73 +6.3
3,350,306 + Psyr_2762 0.73 +3.8
3,350,306 + Psyr_2762 0.73 +6.2
3,350,306 + Psyr_2762 0.73 +3.4
3,350,306 + Psyr_2762 0.73 +3.4
3,350,306 + Psyr_2762 0.73 +0.2
3,350,306 + Psyr_2762 0.73 +7.1
3,350,306 + Psyr_2762 0.73 +1.6
3,350,306 + Psyr_2762 0.73 +5.0
3,350,306 + Psyr_2762 0.73 +1.5
3,350,306 + Psyr_2762 0.73 +2.0
3,350,306 + Psyr_2762 0.73 +4.5
3,350,306 + Psyr_2762 0.73 +1.4
3,350,306 + Psyr_2762 0.73 +1.0
3,350,307 - Psyr_2762 0.74 +4.5
3,350,307 - Psyr_2762 0.74 +1.5
3,350,307 - Psyr_2762 0.74 +6.5
3,350,307 - Psyr_2762 0.74 +4.7
3,350,307 - Psyr_2762 0.74 +5.9
3,350,307 - Psyr_2762 0.74 +0.7
3,350,307 - Psyr_2762 0.74 +3.8
3,350,307 - Psyr_2762 0.74 +2.2
3,350,307 - Psyr_2762 0.74 +2.7
3,350,307 - Psyr_2762 0.74 +1.9
3,350,307 - Psyr_2762 0.74 +6.0
3,350,307 - Psyr_2762 0.74 +4.4
3,350,307 - Psyr_2762 0.74 +0.9
3,350,307 - Psyr_2762 0.74 +2.9
3,350,307 - Psyr_2762 0.74 -0.6
3,350,307 - Psyr_2762 0.74 -0.3
3,350,307 - Psyr_2762 0.74 +2.6
3,350,353 - Psyr_2762 0.84 +2.0
3,350,407 + +1.9
3,350,407 + +4.6
3,350,408 - +4.0
3,350,581 + +0.9
3,350,581 + +2.0
3,350,585 + +2.9
3,350,585 + +0.7
3,350,586 - +5.1
3,350,647 + Psyr_2763 0.15 +1.2
3,350,648 - Psyr_2763 0.15 +7.1
3,350,648 - Psyr_2763 0.15 +5.3
3,350,648 - Psyr_2763 0.15 +4.6
3,350,902 + Psyr_2763 0.52 +4.8
3,350,902 + Psyr_2763 0.52 -0.6
3,350,902 + Psyr_2763 0.52 +1.9
3,350,902 + Psyr_2763 0.52 +0.9
3,350,902 + Psyr_2763 0.52 +5.0
3,350,903 - Psyr_2763 0.52 +2.9
3,350,903 - Psyr_2763 0.52 +0.2
3,350,903 - Psyr_2763 0.52 +0.4
3,351,000 + Psyr_2763 0.66 +3.8
3,351,001 - Psyr_2763 0.67 +5.7
3,351,035 + Psyr_2763 0.71 +2.7
3,351,035 + Psyr_2763 0.71 +2.8
3,351,035 + Psyr_2763 0.71 +2.9
3,351,035 + Psyr_2763 0.71 +6.5
3,351,036 - Psyr_2763 0.72 +5.2
3,351,036 - Psyr_2763 0.72 +4.2
3,351,122 + Psyr_2763 0.84 -0.6
3,351,122 + Psyr_2763 0.84 +1.6
3,351,123 - Psyr_2763 0.84 +1.7
3,351,138 + Psyr_2763 0.86 +3.5
3,351,139 - Psyr_2763 0.87 -1.0
3,351,163 + +5.4
3,351,163 + +3.3
3,351,164 - -0.7
3,351,164 - +2.8
3,351,166 - +4.5
3,351,166 - +6.5
3,351,166 - +6.1
3,351,166 - +5.1
3,351,216 - +1.0
3,351,230 - -0.2
3,351,237 + +3.2
3,351,327 + +1.4
3,351,327 + +4.9
3,351,327 + -0.6
3,351,329 + +1.2
3,351,329 + +6.0
3,351,329 + +6.4
3,351,330 - +0.7

Or see this region's nucleotide sequence