Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2760

Experiment: KB with Mitomycin C 0.625 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2759 and Psyr_RNA43 are separated by 167 nucleotidesPsyr_RNA43 and Psyr_2760 are separated by 186 nucleotidesPsyr_2760 and Psyr_2761 are separated by 46 nucleotides Psyr_2759: Psyr_2759 - Eukaryotic-like DNA topoisomerase I, at 3,346,803 to 3,347,873 _2759 Psyr_RNA43: Psyr_RNA43 - tRNA-Leu, at 3,348,041 to 3,348,126 _RNA43 Psyr_2760: Psyr_2760 - hypothetical protein, at 3,348,313 to 3,348,675 _2760 Psyr_2761: Psyr_2761 - DNA-directed DNA polymerase, at 3,348,722 to 3,350,002 _2761 Position (kb) 3348 3349Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4 5 6 7at 3347.369 kb on + strand, within Psyr_2759at 3347.369 kb on + strand, within Psyr_2759at 3347.369 kb on + strand, within Psyr_2759at 3347.370 kb on - strand, within Psyr_2759at 3347.370 kb on - strand, within Psyr_2759at 3347.468 kb on - strand, within Psyr_2759at 3347.503 kb on - strand, within Psyr_2759at 3347.695 kb on - strand, within Psyr_2759at 3347.695 kb on - strand, within Psyr_2759at 3347.695 kb on - strand, within Psyr_2759at 3347.695 kb on - strand, within Psyr_2759at 3347.802 kb on + strandat 3347.802 kb on + strandat 3347.846 kb on + strandat 3347.970 kb on + strandat 3347.971 kb on - strandat 3348.014 kb on + strandat 3348.014 kb on + strandat 3348.014 kb on + strandat 3348.016 kb on + strandat 3348.016 kb on + strandat 3348.016 kb on + strandat 3348.016 kb on + strandat 3348.016 kb on + strandat 3348.016 kb on + strandat 3348.016 kb on + strandat 3348.018 kb on + strandat 3348.018 kb on + strandat 3348.018 kb on + strandat 3348.018 kb on + strandat 3348.191 kb on + strandat 3348.191 kb on + strandat 3348.191 kb on + strandat 3348.192 kb on - strandat 3348.276 kb on + strandat 3348.281 kb on + strandat 3348.402 kb on + strand, within Psyr_2760at 3348.403 kb on - strand, within Psyr_2760at 3348.403 kb on - strand, within Psyr_2760at 3348.403 kb on - strand, within Psyr_2760at 3348.423 kb on - strand, within Psyr_2760at 3348.435 kb on + strand, within Psyr_2760at 3348.531 kb on + strand, within Psyr_2760at 3348.531 kb on + strand, within Psyr_2760at 3348.531 kb on + strand, within Psyr_2760at 3348.531 kb on + strand, within Psyr_2760at 3348.531 kb on + strand, within Psyr_2760at 3348.531 kb on + strand, within Psyr_2760at 3348.531 kb on + strand, within Psyr_2760at 3348.531 kb on + strand, within Psyr_2760at 3348.531 kb on + strand, within Psyr_2760at 3348.531 kb on + strand, within Psyr_2760at 3348.531 kb on + strand, within Psyr_2760at 3348.532 kb on - strand, within Psyr_2760at 3348.532 kb on - strand, within Psyr_2760at 3348.532 kb on - strand, within Psyr_2760at 3348.765 kb on + strandat 3348.975 kb on + strand, within Psyr_2761at 3348.975 kb on + strand, within Psyr_2761at 3348.975 kb on + strand, within Psyr_2761at 3348.975 kb on + strand, within Psyr_2761at 3348.975 kb on + strand, within Psyr_2761at 3348.976 kb on - strand, within Psyr_2761at 3348.976 kb on - strand, within Psyr_2761at 3348.976 kb on - strand, within Psyr_2761at 3348.981 kb on + strand, within Psyr_2761at 3348.981 kb on + strand, within Psyr_2761at 3348.982 kb on - strand, within Psyr_2761at 3348.982 kb on - strand, within Psyr_2761at 3349.084 kb on - strand, within Psyr_2761at 3349.084 kb on - strand, within Psyr_2761at 3349.087 kb on + strand, within Psyr_2761at 3349.087 kb on + strand, within Psyr_2761at 3349.087 kb on + strand, within Psyr_2761at 3349.088 kb on - strand, within Psyr_2761at 3349.088 kb on - strand, within Psyr_2761at 3349.108 kb on + strand, within Psyr_2761at 3349.108 kb on + strand, within Psyr_2761at 3349.108 kb on + strand, within Psyr_2761at 3349.108 kb on + strand, within Psyr_2761at 3349.108 kb on + strand, within Psyr_2761at 3349.108 kb on + strand, within Psyr_2761at 3349.108 kb on + strand, within Psyr_2761at 3349.108 kb on + strand, within Psyr_2761at 3349.108 kb on + strand, within Psyr_2761at 3349.109 kb on - strand, within Psyr_2761at 3349.109 kb on - strand, within Psyr_2761at 3349.109 kb on - strand, within Psyr_2761at 3349.109 kb on - strand, within Psyr_2761at 3349.109 kb on - strand, within Psyr_2761at 3349.109 kb on - strand, within Psyr_2761at 3349.185 kb on + strand, within Psyr_2761at 3349.185 kb on + strand, within Psyr_2761at 3349.186 kb on - strand, within Psyr_2761at 3349.186 kb on - strand, within Psyr_2761at 3349.352 kb on + strand, within Psyr_2761at 3349.409 kb on + strand, within Psyr_2761at 3349.409 kb on + strand, within Psyr_2761at 3349.409 kb on + strand, within Psyr_2761at 3349.409 kb on + strand, within Psyr_2761at 3349.410 kb on - strand, within Psyr_2761at 3349.410 kb on - strand, within Psyr_2761at 3349.410 kb on - strand, within Psyr_2761at 3349.459 kb on + strand, within Psyr_2761at 3349.459 kb on + strand, within Psyr_2761at 3349.459 kb on + strand, within Psyr_2761at 3349.460 kb on - strand, within Psyr_2761at 3349.460 kb on - strand, within Psyr_2761at 3349.460 kb on - strand, within Psyr_2761at 3349.460 kb on - strand, within Psyr_2761at 3349.595 kb on + strand, within Psyr_2761at 3349.595 kb on + strand, within Psyr_2761at 3349.596 kb on - strand, within Psyr_2761at 3349.598 kb on - strand, within Psyr_2761

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
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3,347,369 + Psyr_2759 0.53 +1.0
3,347,369 + Psyr_2759 0.53 -1.5
3,347,369 + Psyr_2759 0.53 +2.0
3,347,370 - Psyr_2759 0.53 -1.8
3,347,370 - Psyr_2759 0.53 -4.9
3,347,468 - Psyr_2759 0.62 -1.1
3,347,503 - Psyr_2759 0.65 +3.3
3,347,695 - Psyr_2759 0.83 +0.6
3,347,695 - Psyr_2759 0.83 -0.4
3,347,695 - Psyr_2759 0.83 -0.4
3,347,695 - Psyr_2759 0.83 -0.6
3,347,802 + +1.8
3,347,802 + +2.9
3,347,846 + +1.0
3,347,970 + +3.9
3,347,971 - +2.2
3,348,014 + -4.6
3,348,014 + -0.6
3,348,014 + -1.2
3,348,016 + -0.1
3,348,016 + +1.0
3,348,016 + +3.5
3,348,016 + -2.0
3,348,016 + -0.6
3,348,016 + +3.0
3,348,016 + -0.6
3,348,018 + -0.7
3,348,018 + +0.4
3,348,018 + -1.6
3,348,018 + +2.4
3,348,191 + -3.2
3,348,191 + -2.7
3,348,191 + +3.0
3,348,192 - +0.2
3,348,276 + +5.8
3,348,281 + +1.5
3,348,402 + Psyr_2760 0.25 +0.9
3,348,403 - Psyr_2760 0.25 +5.2
3,348,403 - Psyr_2760 0.25 +6.3
3,348,403 - Psyr_2760 0.25 +3.2
3,348,423 - Psyr_2760 0.30 +4.6
3,348,435 + Psyr_2760 0.34 +1.4
3,348,531 + Psyr_2760 0.60 +6.3
3,348,531 + Psyr_2760 0.60 +2.1
3,348,531 + Psyr_2760 0.60 +5.3
3,348,531 + Psyr_2760 0.60 +3.7
3,348,531 + Psyr_2760 0.60 +1.9
3,348,531 + Psyr_2760 0.60 +3.9
3,348,531 + Psyr_2760 0.60 +0.1
3,348,531 + Psyr_2760 0.60 +0.2
3,348,531 + Psyr_2760 0.60 +6.3
3,348,531 + Psyr_2760 0.60 +1.9
3,348,531 + Psyr_2760 0.60 +2.7
3,348,532 - Psyr_2760 0.60 +7.1
3,348,532 - Psyr_2760 0.60 +2.4
3,348,532 - Psyr_2760 0.60 +2.3
3,348,765 + -0.6
3,348,975 + Psyr_2761 0.20 +4.9
3,348,975 + Psyr_2761 0.20 +1.0
3,348,975 + Psyr_2761 0.20 +2.1
3,348,975 + Psyr_2761 0.20 +3.0
3,348,975 + Psyr_2761 0.20 +6.4
3,348,976 - Psyr_2761 0.20 +5.8
3,348,976 - Psyr_2761 0.20 +4.0
3,348,976 - Psyr_2761 0.20 +1.0
3,348,981 + Psyr_2761 0.20 +4.8
3,348,981 + Psyr_2761 0.20 +4.6
3,348,982 - Psyr_2761 0.20 +2.4
3,348,982 - Psyr_2761 0.20 -0.6
3,349,084 - Psyr_2761 0.28 +2.4
3,349,084 - Psyr_2761 0.28 +0.7
3,349,087 + Psyr_2761 0.28 +6.3
3,349,087 + Psyr_2761 0.28 +5.2
3,349,087 + Psyr_2761 0.28 +0.3
3,349,088 - Psyr_2761 0.29 +6.0
3,349,088 - Psyr_2761 0.29 +4.6
3,349,108 + Psyr_2761 0.30 +1.9
3,349,108 + Psyr_2761 0.30 +4.0
3,349,108 + Psyr_2761 0.30 +1.4
3,349,108 + Psyr_2761 0.30 -0.1
3,349,108 + Psyr_2761 0.30 +2.0
3,349,108 + Psyr_2761 0.30 +2.9
3,349,108 + Psyr_2761 0.30 +1.1
3,349,108 + Psyr_2761 0.30 +5.1
3,349,108 + Psyr_2761 0.30 -0.4
3,349,109 - Psyr_2761 0.30 +7.0
3,349,109 - Psyr_2761 0.30 +2.7
3,349,109 - Psyr_2761 0.30 +0.5
3,349,109 - Psyr_2761 0.30 +2.7
3,349,109 - Psyr_2761 0.30 +5.9
3,349,109 - Psyr_2761 0.30 +2.8
3,349,185 + Psyr_2761 0.36 +1.4
3,349,185 + Psyr_2761 0.36 +0.9
3,349,186 - Psyr_2761 0.36 +4.5
3,349,186 - Psyr_2761 0.36 +5.6
3,349,352 + Psyr_2761 0.49 +2.6
3,349,409 + Psyr_2761 0.54 -4.6
3,349,409 + Psyr_2761 0.54 +1.4
3,349,409 + Psyr_2761 0.54 +3.8
3,349,409 + Psyr_2761 0.54 +4.1
3,349,410 - Psyr_2761 0.54 +6.6
3,349,410 - Psyr_2761 0.54 +2.6
3,349,410 - Psyr_2761 0.54 +3.8
3,349,459 + Psyr_2761 0.58 +5.9
3,349,459 + Psyr_2761 0.58 +5.1
3,349,459 + Psyr_2761 0.58 +4.9
3,349,460 - Psyr_2761 0.58 +2.6
3,349,460 - Psyr_2761 0.58 +5.2
3,349,460 - Psyr_2761 0.58 +0.2
3,349,460 - Psyr_2761 0.58 +6.1
3,349,595 + Psyr_2761 0.68 +4.4
3,349,595 + Psyr_2761 0.68 +5.8
3,349,596 - Psyr_2761 0.68 +1.1
3,349,598 - Psyr_2761 0.68 +4.3

Or see this region's nucleotide sequence