Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2702

Experiment: KB with Mitomycin C 0.625 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2701 and Psyr_2702 are separated by 2 nucleotidesPsyr_2702 and Psyr_2703 overlap by 13 nucleotides Psyr_2701: Psyr_2701 - conserved hypothetical protein, at 3,281,504 to 3,282,646 _2701 Psyr_2702: Psyr_2702 - UDP-galactopyranose mutase, at 3,282,649 to 3,283,830 _2702 Psyr_2703: Psyr_2703 - conserved hypothetical protein, at 3,283,818 to 3,285,002 _2703 Position (kb) 3282 3283 3284Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4 5at 3281.692 kb on + strandat 3281.693 kb on - strand, within Psyr_2701at 3281.693 kb on - strand, within Psyr_2701at 3281.693 kb on - strand, within Psyr_2701at 3281.706 kb on - strand, within Psyr_2701at 3281.706 kb on - strand, within Psyr_2701at 3281.745 kb on + strand, within Psyr_2701at 3281.745 kb on + strand, within Psyr_2701at 3281.745 kb on + strand, within Psyr_2701at 3281.745 kb on + strand, within Psyr_2701at 3281.746 kb on - strand, within Psyr_2701at 3281.746 kb on - strand, within Psyr_2701at 3281.872 kb on + strand, within Psyr_2701at 3281.911 kb on - strand, within Psyr_2701at 3282.059 kb on + strand, within Psyr_2701at 3282.059 kb on + strand, within Psyr_2701at 3282.059 kb on + strand, within Psyr_2701at 3282.059 kb on + strand, within Psyr_2701at 3282.060 kb on - strand, within Psyr_2701at 3282.060 kb on - strand, within Psyr_2701at 3282.060 kb on - strand, within Psyr_2701at 3282.060 kb on - strand, within Psyr_2701at 3282.122 kb on + strand, within Psyr_2701at 3282.195 kb on + strand, within Psyr_2701at 3282.195 kb on + strand, within Psyr_2701at 3282.195 kb on + strand, within Psyr_2701at 3282.196 kb on - strand, within Psyr_2701at 3282.196 kb on - strand, within Psyr_2701at 3282.249 kb on + strand, within Psyr_2701at 3282.442 kb on - strand, within Psyr_2701at 3282.488 kb on + strand, within Psyr_2701at 3282.488 kb on + strand, within Psyr_2701at 3282.488 kb on + strand, within Psyr_2701at 3282.488 kb on + strand, within Psyr_2701at 3282.489 kb on - strand, within Psyr_2701at 3282.489 kb on - strand, within Psyr_2701at 3282.716 kb on + strandat 3282.716 kb on + strandat 3282.717 kb on - strandat 3282.755 kb on + strandat 3282.755 kb on + strandat 3282.755 kb on + strandat 3282.756 kb on - strandat 3282.756 kb on - strandat 3282.756 kb on - strandat 3282.756 kb on - strandat 3282.756 kb on - strandat 3282.756 kb on - strandat 3282.756 kb on - strandat 3282.756 kb on - strandat 3282.758 kb on + strandat 3282.758 kb on + strandat 3282.759 kb on - strandat 3282.759 kb on - strandat 3282.759 kb on - strandat 3282.764 kb on + strandat 3282.764 kb on + strandat 3282.765 kb on - strandat 3282.765 kb on - strandat 3282.765 kb on - strandat 3282.765 kb on - strandat 3282.821 kb on + strand, within Psyr_2702at 3282.821 kb on + strand, within Psyr_2702at 3282.822 kb on - strand, within Psyr_2702at 3282.830 kb on + strand, within Psyr_2702at 3282.830 kb on + strand, within Psyr_2702at 3282.831 kb on - strand, within Psyr_2702at 3282.831 kb on - strand, within Psyr_2702at 3282.864 kb on - strand, within Psyr_2702at 3282.866 kb on + strand, within Psyr_2702at 3282.866 kb on + strand, within Psyr_2702at 3282.867 kb on - strand, within Psyr_2702at 3282.930 kb on + strand, within Psyr_2702at 3282.942 kb on - strand, within Psyr_2702at 3283.064 kb on + strand, within Psyr_2702at 3283.065 kb on - strand, within Psyr_2702at 3283.080 kb on - strand, within Psyr_2702at 3283.100 kb on + strand, within Psyr_2702at 3283.115 kb on + strand, within Psyr_2702at 3283.116 kb on - strand, within Psyr_2702at 3283.184 kb on - strand, within Psyr_2702at 3283.244 kb on + strand, within Psyr_2702at 3283.244 kb on + strand, within Psyr_2702at 3283.244 kb on + strand, within Psyr_2702at 3283.245 kb on - strand, within Psyr_2702at 3283.245 kb on - strand, within Psyr_2702at 3283.273 kb on + strand, within Psyr_2702at 3283.274 kb on - strand, within Psyr_2702at 3283.335 kb on - strand, within Psyr_2702at 3283.355 kb on + strand, within Psyr_2702at 3283.355 kb on + strand, within Psyr_2702at 3283.355 kb on + strand, within Psyr_2702at 3283.355 kb on + strand, within Psyr_2702at 3283.355 kb on + strand, within Psyr_2702at 3283.356 kb on - strand, within Psyr_2702at 3283.356 kb on - strand, within Psyr_2702at 3283.356 kb on - strand, within Psyr_2702at 3283.356 kb on - strand, within Psyr_2702at 3283.356 kb on - strand, within Psyr_2702at 3283.356 kb on - strand, within Psyr_2702at 3283.356 kb on - strand, within Psyr_2702at 3283.473 kb on - strand, within Psyr_2702at 3283.525 kb on + strand, within Psyr_2702at 3283.526 kb on - strand, within Psyr_2702at 3283.567 kb on - strand, within Psyr_2702at 3283.567 kb on - strand, within Psyr_2702at 3283.580 kb on + strand, within Psyr_2702at 3283.580 kb on + strand, within Psyr_2702at 3283.581 kb on - strand, within Psyr_2702at 3283.581 kb on - strand, within Psyr_2702at 3283.612 kb on + strand, within Psyr_2702at 3283.612 kb on + strand, within Psyr_2702at 3283.612 kb on + strand, within Psyr_2702at 3283.613 kb on - strand, within Psyr_2702at 3283.613 kb on - strand, within Psyr_2702at 3283.613 kb on - strand, within Psyr_2702at 3283.613 kb on - strand, within Psyr_2702at 3283.613 kb on - strand, within Psyr_2702at 3283.613 kb on - strand, within Psyr_2702at 3283.613 kb on - strand, within Psyr_2702at 3283.613 kb on - strand, within Psyr_2702at 3283.613 kb on - strand, within Psyr_2702at 3283.614 kb on + strand, within Psyr_2702at 3283.614 kb on + strand, within Psyr_2702at 3283.615 kb on - strand, within Psyr_2702at 3283.625 kb on + strand, within Psyr_2702at 3283.664 kb on + strand, within Psyr_2702at 3283.784 kb on + strandat 3283.784 kb on + strandat 3283.784 kb on + strandat 3283.943 kb on + strand, within Psyr_2703at 3283.943 kb on + strand, within Psyr_2703at 3283.943 kb on + strand, within Psyr_2703at 3283.943 kb on + strand, within Psyr_2703at 3283.943 kb on + strand, within Psyr_2703at 3283.943 kb on + strand, within Psyr_2703at 3283.943 kb on + strand, within Psyr_2703at 3283.944 kb on - strand, within Psyr_2703at 3283.944 kb on - strand, within Psyr_2703at 3283.944 kb on - strand, within Psyr_2703at 3284.026 kb on + strand, within Psyr_2703at 3284.167 kb on + strand, within Psyr_2703at 3284.167 kb on + strand, within Psyr_2703at 3284.168 kb on - strand, within Psyr_2703at 3284.199 kb on + strand, within Psyr_2703at 3284.199 kb on + strand, within Psyr_2703at 3284.200 kb on - strand, within Psyr_2703at 3284.200 kb on - strand, within Psyr_2703at 3284.200 kb on - strand, within Psyr_2703at 3284.200 kb on - strand, within Psyr_2703at 3284.200 kb on - strand, within Psyr_2703at 3284.368 kb on + strand, within Psyr_2703at 3284.368 kb on + strand, within Psyr_2703at 3284.368 kb on + strand, within Psyr_2703at 3284.368 kb on + strand, within Psyr_2703at 3284.368 kb on + strand, within Psyr_2703at 3284.368 kb on + strand, within Psyr_2703at 3284.368 kb on + strand, within Psyr_2703at 3284.368 kb on + strand, within Psyr_2703at 3284.368 kb on + strand, within Psyr_2703at 3284.368 kb on + strand, within Psyr_2703at 3284.368 kb on + strand, within Psyr_2703at 3284.368 kb on + strand, within Psyr_2703at 3284.368 kb on + strand, within Psyr_2703at 3284.369 kb on - strand, within Psyr_2703at 3284.369 kb on - strand, within Psyr_2703at 3284.369 kb on - strand, within Psyr_2703at 3284.369 kb on - strand, within Psyr_2703at 3284.369 kb on - strand, within Psyr_2703at 3284.369 kb on - strand, within Psyr_2703at 3284.369 kb on - strand, within Psyr_2703at 3284.369 kb on - strand, within Psyr_2703at 3284.369 kb on - strand, within Psyr_2703at 3284.369 kb on - strand, within Psyr_2703at 3284.369 kb on - strand, within Psyr_2703at 3284.369 kb on - strand, within Psyr_2703at 3284.369 kb on - strand, within Psyr_2703at 3284.369 kb on - strand, within Psyr_2703at 3284.482 kb on - strand, within Psyr_2703at 3284.499 kb on - strand, within Psyr_2703at 3284.650 kb on + strand, within Psyr_2703at 3284.700 kb on + strand, within Psyr_2703

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
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3,281,692 + -0.3
3,281,693 - Psyr_2701 0.17 +0.7
3,281,693 - Psyr_2701 0.17 +2.3
3,281,693 - Psyr_2701 0.17 -5.0
3,281,706 - Psyr_2701 0.18 +2.0
3,281,706 - Psyr_2701 0.18 -0.4
3,281,745 + Psyr_2701 0.21 +2.0
3,281,745 + Psyr_2701 0.21 +1.7
3,281,745 + Psyr_2701 0.21 +2.7
3,281,745 + Psyr_2701 0.21 +2.5
3,281,746 - Psyr_2701 0.21 +3.5
3,281,746 - Psyr_2701 0.21 +2.0
3,281,872 + Psyr_2701 0.32 +3.3
3,281,911 - Psyr_2701 0.36 +3.0
3,282,059 + Psyr_2701 0.49 -2.6
3,282,059 + Psyr_2701 0.49 -3.1
3,282,059 + Psyr_2701 0.49 -0.3
3,282,059 + Psyr_2701 0.49 +1.3
3,282,060 - Psyr_2701 0.49 -3.7
3,282,060 - Psyr_2701 0.49 -1.0
3,282,060 - Psyr_2701 0.49 -1.9
3,282,060 - Psyr_2701 0.49 -2.3
3,282,122 + Psyr_2701 0.54 -4.2
3,282,195 + Psyr_2701 0.60 +2.3
3,282,195 + Psyr_2701 0.60 -0.5
3,282,195 + Psyr_2701 0.60 +2.9
3,282,196 - Psyr_2701 0.61 -2.4
3,282,196 - Psyr_2701 0.61 +0.7
3,282,249 + Psyr_2701 0.65 -1.2
3,282,442 - Psyr_2701 0.82 -2.1
3,282,488 + Psyr_2701 0.86 +4.0
3,282,488 + Psyr_2701 0.86 +2.3
3,282,488 + Psyr_2701 0.86 -0.3
3,282,488 + Psyr_2701 0.86 -0.4
3,282,489 - Psyr_2701 0.86 +2.3
3,282,489 - Psyr_2701 0.86 -1.8
3,282,716 + -0.3
3,282,716 + +0.7
3,282,717 - -0.3
3,282,755 + -0.3
3,282,755 + +2.7
3,282,755 + -1.6
3,282,756 - +1.3
3,282,756 - -3.7
3,282,756 - -0.9
3,282,756 - -1.2
3,282,756 - -1.2
3,282,756 - +5.4
3,282,756 - -0.3
3,282,756 - +2.3
3,282,758 + -1.6
3,282,758 + -4.1
3,282,759 - +3.8
3,282,759 - -0.6
3,282,759 - +2.7
3,282,764 + -3.6
3,282,764 + -3.6
3,282,765 - +0.3
3,282,765 - +0.4
3,282,765 - +3.7
3,282,765 - +0.4
3,282,821 + Psyr_2702 0.15 +2.5
3,282,821 + Psyr_2702 0.15 -0.3
3,282,822 - Psyr_2702 0.15 -0.3
3,282,830 + Psyr_2702 0.15 -2.3
3,282,830 + Psyr_2702 0.15 -2.5
3,282,831 - Psyr_2702 0.15 +3.0
3,282,831 - Psyr_2702 0.15 -0.1
3,282,864 - Psyr_2702 0.18 +1.7
3,282,866 + Psyr_2702 0.18 -1.0
3,282,866 + Psyr_2702 0.18 +0.3
3,282,867 - Psyr_2702 0.18 +0.7
3,282,930 + Psyr_2702 0.24 +2.5
3,282,942 - Psyr_2702 0.25 +1.0
3,283,064 + Psyr_2702 0.35 +0.7
3,283,065 - Psyr_2702 0.35 -1.5
3,283,080 - Psyr_2702 0.36 +4.1
3,283,100 + Psyr_2702 0.38 -2.0
3,283,115 + Psyr_2702 0.39 +1.7
3,283,116 - Psyr_2702 0.40 -1.6
3,283,184 - Psyr_2702 0.45 +3.0
3,283,244 + Psyr_2702 0.50 -4.6
3,283,244 + Psyr_2702 0.50 -3.6
3,283,244 + Psyr_2702 0.50 +2.0
3,283,245 - Psyr_2702 0.50 -3.9
3,283,245 - Psyr_2702 0.50 -3.0
3,283,273 + Psyr_2702 0.53 -4.3
3,283,274 - Psyr_2702 0.53 -0.6
3,283,335 - Psyr_2702 0.58 -3.9
3,283,355 + Psyr_2702 0.60 +1.3
3,283,355 + Psyr_2702 0.60 -3.3
3,283,355 + Psyr_2702 0.60 -1.6
3,283,355 + Psyr_2702 0.60 -1.2
3,283,355 + Psyr_2702 0.60 -2.9
3,283,356 - Psyr_2702 0.60 +2.0
3,283,356 - Psyr_2702 0.60 +2.0
3,283,356 - Psyr_2702 0.60 -0.3
3,283,356 - Psyr_2702 0.60 +1.7
3,283,356 - Psyr_2702 0.60 -0.3
3,283,356 - Psyr_2702 0.60 +0.7
3,283,356 - Psyr_2702 0.60 +0.4
3,283,473 - Psyr_2702 0.70 +1.7
3,283,525 + Psyr_2702 0.74 -2.5
3,283,526 - Psyr_2702 0.74 +2.3
3,283,567 - Psyr_2702 0.78 +2.8
3,283,567 - Psyr_2702 0.78 -3.2
3,283,580 + Psyr_2702 0.79 +1.3
3,283,580 + Psyr_2702 0.79 -1.1
3,283,581 - Psyr_2702 0.79 -0.3
3,283,581 - Psyr_2702 0.79 -3.5
3,283,612 + Psyr_2702 0.81 -0.3
3,283,612 + Psyr_2702 0.81 -0.3
3,283,612 + Psyr_2702 0.81 +0.7
3,283,613 - Psyr_2702 0.82 -0.3
3,283,613 - Psyr_2702 0.82 +1.3
3,283,613 - Psyr_2702 0.82 -1.3
3,283,613 - Psyr_2702 0.82 -4.9
3,283,613 - Psyr_2702 0.82 -0.3
3,283,613 - Psyr_2702 0.82 -4.1
3,283,613 - Psyr_2702 0.82 -3.9
3,283,613 - Psyr_2702 0.82 -4.7
3,283,613 - Psyr_2702 0.82 -0.3
3,283,614 + Psyr_2702 0.82 -0.3
3,283,614 + Psyr_2702 0.82 -1.5
3,283,615 - Psyr_2702 0.82 -0.3
3,283,625 + Psyr_2702 0.83 -2.1
3,283,664 + Psyr_2702 0.86 -2.8
3,283,784 + -3.3
3,283,784 + -4.7
3,283,784 + +0.7
3,283,943 + Psyr_2703 0.11 -5.1
3,283,943 + Psyr_2703 0.11 -0.3
3,283,943 + Psyr_2703 0.11 -3.5
3,283,943 + Psyr_2703 0.11 +2.7
3,283,943 + Psyr_2703 0.11 -0.9
3,283,943 + Psyr_2703 0.11 +2.0
3,283,943 + Psyr_2703 0.11 -0.3
3,283,944 - Psyr_2703 0.11 -0.3
3,283,944 - Psyr_2703 0.11 +2.5
3,283,944 - Psyr_2703 0.11 -3.4
3,284,026 + Psyr_2703 0.18 +0.3
3,284,167 + Psyr_2703 0.29 +3.7
3,284,167 + Psyr_2703 0.29 -2.5
3,284,168 - Psyr_2703 0.30 -0.9
3,284,199 + Psyr_2703 0.32 -1.8
3,284,199 + Psyr_2703 0.32 -3.8
3,284,200 - Psyr_2703 0.32 +1.3
3,284,200 - Psyr_2703 0.32 -0.7
3,284,200 - Psyr_2703 0.32 -1.3
3,284,200 - Psyr_2703 0.32 +2.5
3,284,200 - Psyr_2703 0.32 +1.5
3,284,368 + Psyr_2703 0.46 +2.7
3,284,368 + Psyr_2703 0.46 +2.5
3,284,368 + Psyr_2703 0.46 -1.9
3,284,368 + Psyr_2703 0.46 -0.3
3,284,368 + Psyr_2703 0.46 -4.0
3,284,368 + Psyr_2703 0.46 -3.2
3,284,368 + Psyr_2703 0.46 -0.8
3,284,368 + Psyr_2703 0.46 -3.2
3,284,368 + Psyr_2703 0.46 +1.7
3,284,368 + Psyr_2703 0.46 +1.7
3,284,368 + Psyr_2703 0.46 +1.3
3,284,368 + Psyr_2703 0.46 +2.3
3,284,368 + Psyr_2703 0.46 -3.6
3,284,369 - Psyr_2703 0.46 +2.7
3,284,369 - Psyr_2703 0.46 +1.3
3,284,369 - Psyr_2703 0.46 -0.3
3,284,369 - Psyr_2703 0.46 +2.3
3,284,369 - Psyr_2703 0.46 -0.7
3,284,369 - Psyr_2703 0.46 +2.5
3,284,369 - Psyr_2703 0.46 +2.7
3,284,369 - Psyr_2703 0.46 +2.0
3,284,369 - Psyr_2703 0.46 +2.8
3,284,369 - Psyr_2703 0.46 +0.2
3,284,369 - Psyr_2703 0.46 -1.5
3,284,369 - Psyr_2703 0.46 -4.0
3,284,369 - Psyr_2703 0.46 -0.1
3,284,369 - Psyr_2703 0.46 +3.0
3,284,482 - Psyr_2703 0.56 -2.1
3,284,499 - Psyr_2703 0.57 -1.9
3,284,650 + Psyr_2703 0.70 -3.5
3,284,700 + Psyr_2703 0.74 -3.6

Or see this region's nucleotide sequence