Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2676

Experiment: KB with Mitomycin C 0.625 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2675 and Psyr_2676 overlap by 4 nucleotidesPsyr_2676 and Psyr_2677 overlap by 4 nucleotides Psyr_2675: Psyr_2675 - transcriptional regulator, GntR family, at 3,246,619 to 3,247,356 _2675 Psyr_2676: Psyr_2676 - Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal, at 3,247,353 to 3,248,369 _2676 Psyr_2677: Psyr_2677 - Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal, at 3,248,366 to 3,249,499 _2677 Position (kb) 3247 3248 3249Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 3246.368 kb on + strandat 3246.852 kb on + strand, within Psyr_2675at 3246.852 kb on + strand, within Psyr_2675at 3246.853 kb on - strand, within Psyr_2675at 3246.853 kb on - strand, within Psyr_2675at 3246.853 kb on - strand, within Psyr_2675at 3247.191 kb on + strand, within Psyr_2675at 3247.191 kb on + strand, within Psyr_2675at 3247.213 kb on + strand, within Psyr_2675at 3247.214 kb on - strand, within Psyr_2675at 3247.214 kb on - strand, within Psyr_2675at 3247.214 kb on - strand, within Psyr_2675at 3247.214 kb on - strand, within Psyr_2675at 3247.214 kb on - strand, within Psyr_2675at 3247.295 kb on + strandat 3247.295 kb on + strandat 3247.295 kb on + strandat 3247.295 kb on + strandat 3247.295 kb on + strandat 3247.296 kb on - strandat 3247.296 kb on - strandat 3247.296 kb on - strandat 3247.296 kb on - strandat 3247.296 kb on - strandat 3247.352 kb on + strandat 3247.352 kb on + strandat 3247.353 kb on - strandat 3247.420 kb on + strandat 3247.871 kb on + strand, within Psyr_2676at 3248.064 kb on + strand, within Psyr_2676at 3248.064 kb on + strand, within Psyr_2676at 3248.064 kb on + strand, within Psyr_2676at 3248.064 kb on + strand, within Psyr_2676at 3248.064 kb on + strand, within Psyr_2676at 3248.065 kb on - strand, within Psyr_2676at 3248.065 kb on - strand, within Psyr_2676at 3248.065 kb on - strand, within Psyr_2676at 3248.127 kb on + strand, within Psyr_2676at 3248.127 kb on + strand, within Psyr_2676at 3248.128 kb on - strand, within Psyr_2676at 3248.128 kb on - strand, within Psyr_2676at 3248.560 kb on - strand, within Psyr_2677at 3248.639 kb on + strand, within Psyr_2677at 3248.639 kb on + strand, within Psyr_2677at 3248.640 kb on - strand, within Psyr_2677at 3248.640 kb on - strand, within Psyr_2677at 3248.640 kb on - strand, within Psyr_2677at 3248.640 kb on - strand, within Psyr_2677at 3248.689 kb on - strand, within Psyr_2677at 3248.781 kb on + strand, within Psyr_2677at 3248.781 kb on + strand, within Psyr_2677at 3248.782 kb on - strand, within Psyr_2677at 3248.785 kb on + strand, within Psyr_2677at 3248.785 kb on + strand, within Psyr_2677at 3248.785 kb on + strand, within Psyr_2677at 3248.785 kb on + strand, within Psyr_2677at 3248.786 kb on - strand, within Psyr_2677at 3248.786 kb on - strand, within Psyr_2677at 3248.786 kb on - strand, within Psyr_2677at 3248.786 kb on - strand, within Psyr_2677at 3248.829 kb on + strand, within Psyr_2677at 3248.841 kb on + strand, within Psyr_2677at 3248.841 kb on + strand, within Psyr_2677at 3249.104 kb on + strand, within Psyr_2677at 3249.104 kb on + strand, within Psyr_2677at 3249.104 kb on + strand, within Psyr_2677at 3249.104 kb on + strand, within Psyr_2677at 3249.105 kb on - strand, within Psyr_2677at 3249.105 kb on - strand, within Psyr_2677at 3249.105 kb on - strand, within Psyr_2677at 3249.105 kb on - strand, within Psyr_2677at 3249.105 kb on - strand, within Psyr_2677at 3249.170 kb on - strand, within Psyr_2677at 3249.170 kb on - strand, within Psyr_2677

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
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3,246,368 + +1.8
3,246,852 + Psyr_2675 0.32 -0.2
3,246,852 + Psyr_2675 0.32 +1.4
3,246,853 - Psyr_2675 0.32 -3.1
3,246,853 - Psyr_2675 0.32 +3.6
3,246,853 - Psyr_2675 0.32 -0.1
3,247,191 + Psyr_2675 0.78 +0.8
3,247,191 + Psyr_2675 0.78 -2.2
3,247,213 + Psyr_2675 0.80 +0.2
3,247,214 - Psyr_2675 0.81 -0.9
3,247,214 - Psyr_2675 0.81 -1.2
3,247,214 - Psyr_2675 0.81 +1.1
3,247,214 - Psyr_2675 0.81 -2.0
3,247,214 - Psyr_2675 0.81 +2.4
3,247,295 + -2.5
3,247,295 + -0.2
3,247,295 + +2.1
3,247,295 + -1.8
3,247,295 + +1.8
3,247,296 - -2.9
3,247,296 - +1.4
3,247,296 - -0.9
3,247,296 - -0.1
3,247,296 - -0.4
3,247,352 + +1.8
3,247,352 + -0.2
3,247,353 - +3.8
3,247,420 + +0.1
3,247,871 + Psyr_2676 0.51 -0.9
3,248,064 + Psyr_2676 0.70 +0.8
3,248,064 + Psyr_2676 0.70 -3.7
3,248,064 + Psyr_2676 0.70 -0.2
3,248,064 + Psyr_2676 0.70 -0.2
3,248,064 + Psyr_2676 0.70 -3.2
3,248,065 - Psyr_2676 0.70 -1.0
3,248,065 - Psyr_2676 0.70 +1.4
3,248,065 - Psyr_2676 0.70 +2.1
3,248,127 + Psyr_2676 0.76 -1.8
3,248,127 + Psyr_2676 0.76 -0.7
3,248,128 - Psyr_2676 0.76 +3.1
3,248,128 - Psyr_2676 0.76 -1.9
3,248,560 - Psyr_2677 0.17 +2.9
3,248,639 + Psyr_2677 0.24 +1.4
3,248,639 + Psyr_2677 0.24 -3.3
3,248,640 - Psyr_2677 0.24 -0.2
3,248,640 - Psyr_2677 0.24 -1.9
3,248,640 - Psyr_2677 0.24 +3.9
3,248,640 - Psyr_2677 0.24 -2.9
3,248,689 - Psyr_2677 0.28 +2.1
3,248,781 + Psyr_2677 0.37 -1.6
3,248,781 + Psyr_2677 0.37 +2.1
3,248,782 - Psyr_2677 0.37 -1.8
3,248,785 + Psyr_2677 0.37 +1.8
3,248,785 + Psyr_2677 0.37 +1.8
3,248,785 + Psyr_2677 0.37 +3.2
3,248,785 + Psyr_2677 0.37 -3.5
3,248,786 - Psyr_2677 0.37 +0.2
3,248,786 - Psyr_2677 0.37 -1.0
3,248,786 - Psyr_2677 0.37 +1.4
3,248,786 - Psyr_2677 0.37 -0.9
3,248,829 + Psyr_2677 0.41 +2.1
3,248,841 + Psyr_2677 0.42 +2.1
3,248,841 + Psyr_2677 0.42 -0.9
3,249,104 + Psyr_2677 0.65 -2.0
3,249,104 + Psyr_2677 0.65 +1.8
3,249,104 + Psyr_2677 0.65 +1.8
3,249,104 + Psyr_2677 0.65 -4.4
3,249,105 - Psyr_2677 0.65 -1.6
3,249,105 - Psyr_2677 0.65 -1.1
3,249,105 - Psyr_2677 0.65 -2.6
3,249,105 - Psyr_2677 0.65 +0.4
3,249,105 - Psyr_2677 0.65 -0.5
3,249,170 - Psyr_2677 0.71 +1.4
3,249,170 - Psyr_2677 0.71 +0.1

Or see this region's nucleotide sequence