Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2606 and Psyr_2607 overlap by 22 nucleotides Psyr_2607 and Psyr_2608 are separated by 224 nucleotides
Psyr_2606: Psyr_2606 - RND efflux system, outer membrane lipoprotein, NodT, at 3,060,225 to 3,061,661
_2606
Psyr_2607: Psyr_2607 - regulatory protein, LuxR, at 3,061,640 to 3,062,470
_2607
Psyr_2608: Psyr_2608 - Amino acid adenylation, at 3,062,695 to 3,091,191
_2608
Position (kb)
3061
3062
3063 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 3060.702 kb on - strand, within Psyr_2606 at 3060.892 kb on - strand, within Psyr_2606 at 3061.106 kb on - strand, within Psyr_2606 at 3061.106 kb on - strand, within Psyr_2606 at 3061.135 kb on - strand, within Psyr_2606 at 3061.135 kb on - strand, within Psyr_2606 at 3061.135 kb on - strand, within Psyr_2606 at 3061.137 kb on + strand, within Psyr_2606 at 3061.138 kb on - strand, within Psyr_2606 at 3061.138 kb on - strand, within Psyr_2606 at 3061.171 kb on + strand, within Psyr_2606 at 3061.171 kb on + strand, within Psyr_2606 at 3061.171 kb on + strand, within Psyr_2606 at 3061.172 kb on - strand, within Psyr_2606 at 3061.172 kb on - strand, within Psyr_2606 at 3061.172 kb on - strand, within Psyr_2606 at 3061.172 kb on - strand, within Psyr_2606 at 3061.204 kb on - strand, within Psyr_2606 at 3061.228 kb on + strand, within Psyr_2606 at 3061.259 kb on + strand, within Psyr_2606 at 3061.259 kb on + strand, within Psyr_2606 at 3061.260 kb on - strand, within Psyr_2606 at 3061.652 kb on + strand at 3061.652 kb on + strand at 3061.653 kb on - strand at 3061.653 kb on - strand at 3061.653 kb on - strand at 3061.866 kb on + strand, within Psyr_2607 at 3061.867 kb on - strand, within Psyr_2607 at 3061.872 kb on + strand, within Psyr_2607 at 3061.872 kb on + strand, within Psyr_2607 at 3061.873 kb on - strand, within Psyr_2607 at 3061.937 kb on + strand, within Psyr_2607 at 3061.937 kb on + strand, within Psyr_2607 at 3061.937 kb on + strand, within Psyr_2607 at 3061.938 kb on - strand, within Psyr_2607 at 3061.938 kb on - strand, within Psyr_2607 at 3061.983 kb on + strand, within Psyr_2607 at 3062.276 kb on + strand, within Psyr_2607 at 3062.276 kb on + strand, within Psyr_2607 at 3062.277 kb on - strand, within Psyr_2607 at 3062.277 kb on - strand, within Psyr_2607 at 3062.350 kb on + strand, within Psyr_2607 at 3062.350 kb on + strand, within Psyr_2607 at 3062.350 kb on + strand, within Psyr_2607 at 3062.350 kb on + strand, within Psyr_2607 at 3062.351 kb on - strand, within Psyr_2607 at 3062.351 kb on - strand, within Psyr_2607 at 3062.358 kb on - strand, within Psyr_2607 at 3062.358 kb on - strand, within Psyr_2607 at 3062.364 kb on + strand, within Psyr_2607 at 3062.364 kb on + strand, within Psyr_2607 at 3062.364 kb on + strand, within Psyr_2607 at 3062.364 kb on + strand, within Psyr_2607 at 3062.424 kb on + strand at 3062.424 kb on + strand at 3062.425 kb on - strand at 3062.470 kb on + strand at 3062.470 kb on + strand at 3062.471 kb on - strand at 3062.471 kb on - strand at 3062.471 kb on - strand at 3062.471 kb on - strand at 3062.471 kb on - strand at 3062.569 kb on + strand at 3062.630 kb on - strand at 3062.697 kb on - strand at 3062.722 kb on + strand at 3062.722 kb on + strand at 3062.723 kb on - strand at 3062.723 kb on - strand at 3062.931 kb on + strand at 3062.932 kb on - strand at 3062.954 kb on + strand at 3062.954 kb on + strand at 3062.954 kb on + strand at 3062.954 kb on + strand at 3062.954 kb on + strand at 3062.954 kb on + strand at 3062.954 kb on + strand at 3062.954 kb on + strand at 3062.955 kb on - strand at 3062.955 kb on - strand at 3062.955 kb on - strand at 3062.955 kb on - strand at 3062.955 kb on - strand at 3062.955 kb on - strand at 3062.955 kb on - strand at 3062.955 kb on - strand at 3063.276 kb on - strand at 3063.282 kb on + strand at 3063.331 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 3,060,702 - Psyr_2606 0.33 +3.2 3,060,892 - Psyr_2606 0.46 -3.0 3,061,106 - Psyr_2606 0.61 -1.2 3,061,106 - Psyr_2606 0.61 -0.0 3,061,135 - Psyr_2606 0.63 +1.6 3,061,135 - Psyr_2606 0.63 -1.2 3,061,135 - Psyr_2606 0.63 +2.8 3,061,137 + Psyr_2606 0.63 -0.3 3,061,138 - Psyr_2606 0.64 +2.8 3,061,138 - Psyr_2606 0.64 +1.1 3,061,171 + Psyr_2606 0.66 -2.0 3,061,171 + Psyr_2606 0.66 -2.5 3,061,171 + Psyr_2606 0.66 -0.7 3,061,172 - Psyr_2606 0.66 -1.5 3,061,172 - Psyr_2606 0.66 +1.6 3,061,172 - Psyr_2606 0.66 +4.0 3,061,172 - Psyr_2606 0.66 +0.3 3,061,204 - Psyr_2606 0.68 -4.3 3,061,228 + Psyr_2606 0.70 +3.4 3,061,259 + Psyr_2606 0.72 -2.8 3,061,259 + Psyr_2606 0.72 -2.0 3,061,260 - Psyr_2606 0.72 +1.3 3,061,652 + +1.6 3,061,652 + -0.5 3,061,653 - +2.6 3,061,653 - +1.6 3,061,653 - +2.9 3,061,866 + Psyr_2607 0.27 -0.0 3,061,867 - Psyr_2607 0.27 -4.0 3,061,872 + Psyr_2607 0.28 -2.1 3,061,872 + Psyr_2607 0.28 -3.5 3,061,873 - Psyr_2607 0.28 -0.0 3,061,937 + Psyr_2607 0.36 -0.8 3,061,937 + Psyr_2607 0.36 +2.8 3,061,937 + Psyr_2607 0.36 -0.9 3,061,938 - Psyr_2607 0.36 +2.3 3,061,938 - Psyr_2607 0.36 -0.5 3,061,983 + Psyr_2607 0.41 -3.5 3,062,276 + Psyr_2607 0.77 -4.3 3,062,276 + Psyr_2607 0.77 -1.9 3,062,277 - Psyr_2607 0.77 -0.0 3,062,277 - Psyr_2607 0.77 -0.0 3,062,350 + Psyr_2607 0.85 -1.7 3,062,350 + Psyr_2607 0.85 +1.0 3,062,350 + Psyr_2607 0.85 -2.3 3,062,350 + Psyr_2607 0.85 -4.0 3,062,351 - Psyr_2607 0.86 -2.5 3,062,351 - Psyr_2607 0.86 -0.0 3,062,358 - Psyr_2607 0.86 -0.0 3,062,358 - Psyr_2607 0.86 -4.1 3,062,364 + Psyr_2607 0.87 +1.6 3,062,364 + Psyr_2607 0.87 -3.5 3,062,364 + Psyr_2607 0.87 +1.0 3,062,364 + Psyr_2607 0.87 -3.2 3,062,424 + -0.3 3,062,424 + -2.5 3,062,425 - -3.3 3,062,470 + -4.0 3,062,470 + -1.2 3,062,471 - -0.0 3,062,471 - -0.0 3,062,471 - -0.0 3,062,471 - -0.0 3,062,471 - -4.7 3,062,569 + +2.8 3,062,630 - -3.0 3,062,697 - -2.8 3,062,722 + -1.4 3,062,722 + +3.4 3,062,723 - -0.0 3,062,723 - +1.0 3,062,931 + -4.0 3,062,932 - -3.3 3,062,954 + -0.4 3,062,954 + +3.4 3,062,954 + -1.9 3,062,954 + -1.8 3,062,954 + -2.1 3,062,954 + -0.0 3,062,954 + -0.0 3,062,954 + +2.0 3,062,955 - +0.5 3,062,955 - -0.0 3,062,955 - -0.8 3,062,955 - -2.6 3,062,955 - -1.9 3,062,955 - +3.2 3,062,955 - -0.5 3,062,955 - +0.7 3,063,276 - -0.0 3,063,282 + +1.6 3,063,331 + +2.0
Or see this region's nucleotide sequence