Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2530 and Psyr_2531 are separated by 188 nucleotides Psyr_2531 and Psyr_2532 are separated by 24 nucleotides
Psyr_2530: Psyr_2530 - General substrate transporter:Major facilitator superfamily, at 2,941,602 to 2,942,912
_2530
Psyr_2531: Psyr_2531 - transcriptional regulator, LysR family, at 2,943,101 to 2,944,012
_2531
Psyr_2532: Psyr_2532 - transcriptional regulator, LysR family, at 2,944,037 to 2,944,942
_2532
Position (kb)
2943
2944
2945 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 2942.131 kb on + strand, within Psyr_2530 at 2942.132 kb on - strand, within Psyr_2530 at 2942.146 kb on + strand, within Psyr_2530 at 2942.146 kb on + strand, within Psyr_2530 at 2942.147 kb on - strand, within Psyr_2530 at 2942.147 kb on - strand, within Psyr_2530 at 2942.147 kb on - strand, within Psyr_2530 at 2942.147 kb on - strand, within Psyr_2530 at 2942.254 kb on + strand, within Psyr_2530 at 2942.255 kb on - strand, within Psyr_2530 at 2942.255 kb on - strand, within Psyr_2530 at 2942.255 kb on - strand, within Psyr_2530 at 2942.255 kb on - strand, within Psyr_2530 at 2942.287 kb on + strand, within Psyr_2530 at 2942.287 kb on + strand, within Psyr_2530 at 2942.287 kb on + strand, within Psyr_2530 at 2942.443 kb on + strand at 2942.443 kb on + strand, within Psyr_2530 at 2942.668 kb on + strand, within Psyr_2530 at 2942.668 kb on + strand at 2942.668 kb on + strand, within Psyr_2530 at 2942.668 kb on + strand, within Psyr_2530 at 2942.668 kb on + strand, within Psyr_2530 at 2942.668 kb on + strand, within Psyr_2530 at 2942.668 kb on + strand, within Psyr_2530 at 2942.668 kb on + strand, within Psyr_2530 at 2942.669 kb on - strand, within Psyr_2530 at 2942.669 kb on - strand, within Psyr_2530 at 2942.669 kb on - strand, within Psyr_2530 at 2942.669 kb on - strand, within Psyr_2530 at 2942.669 kb on - strand, within Psyr_2530 at 2942.669 kb on - strand, within Psyr_2530 at 2942.669 kb on - strand, within Psyr_2530 at 2942.669 kb on - strand, within Psyr_2530 at 2942.669 kb on - strand, within Psyr_2530 at 2942.669 kb on - strand, within Psyr_2530 at 2942.901 kb on + strand at 2942.901 kb on + strand at 2942.901 kb on + strand at 2942.901 kb on + strand at 2942.901 kb on + strand at 2942.901 kb on + strand at 2942.902 kb on - strand at 2942.902 kb on - strand at 2942.902 kb on - strand at 2943.063 kb on + strand at 2943.198 kb on + strand, within Psyr_2531 at 2943.198 kb on + strand, within Psyr_2531 at 2943.198 kb on + strand, within Psyr_2531 at 2943.199 kb on - strand, within Psyr_2531 at 2943.202 kb on - strand, within Psyr_2531 at 2943.257 kb on + strand, within Psyr_2531 at 2943.805 kb on - strand, within Psyr_2531 at 2943.805 kb on - strand, within Psyr_2531 at 2944.120 kb on - strand at 2944.120 kb on - strand at 2944.131 kb on + strand, within Psyr_2532 at 2944.131 kb on + strand, within Psyr_2532 at 2944.132 kb on - strand, within Psyr_2532 at 2944.132 kb on - strand, within Psyr_2532 at 2944.309 kb on + strand, within Psyr_2532 at 2944.310 kb on - strand, within Psyr_2532 at 2944.355 kb on + strand, within Psyr_2532 at 2944.356 kb on - strand, within Psyr_2532 at 2944.356 kb on - strand, within Psyr_2532 at 2944.399 kb on - strand, within Psyr_2532 at 2944.465 kb on - strand, within Psyr_2532 at 2944.566 kb on + strand, within Psyr_2532 at 2944.567 kb on - strand, within Psyr_2532 at 2944.584 kb on + strand, within Psyr_2532 at 2944.732 kb on - strand, within Psyr_2532 at 2944.732 kb on - strand, within Psyr_2532 at 2944.974 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 2,942,131 + Psyr_2530 0.40 +1.1 2,942,132 - Psyr_2530 0.40 +0.1 2,942,146 + Psyr_2530 0.41 -0.7 2,942,146 + Psyr_2530 0.41 +2.9 2,942,147 - Psyr_2530 0.42 +0.1 2,942,147 - Psyr_2530 0.42 +1.7 2,942,147 - Psyr_2530 0.42 -1.3 2,942,147 - Psyr_2530 0.42 -1.5 2,942,254 + Psyr_2530 0.50 +0.1 2,942,255 - Psyr_2530 0.50 -0.2 2,942,255 - Psyr_2530 0.50 -1.7 2,942,255 - Psyr_2530 0.50 -1.5 2,942,255 - Psyr_2530 0.50 +0.1 2,942,287 + Psyr_2530 0.52 -2.6 2,942,287 + Psyr_2530 0.52 -0.3 2,942,287 + Psyr_2530 0.52 +1.7 2,942,443 + +0.1 2,942,443 + Psyr_2530 0.64 -3.3 2,942,668 + Psyr_2530 0.81 -2.3 2,942,668 + +2.1 2,942,668 + Psyr_2530 0.81 -2.2 2,942,668 + Psyr_2530 0.81 +0.1 2,942,668 + Psyr_2530 0.81 +2.1 2,942,668 + Psyr_2530 0.81 -1.5 2,942,668 + Psyr_2530 0.81 +1.1 2,942,668 + Psyr_2530 0.81 +0.1 2,942,669 - Psyr_2530 0.81 +0.1 2,942,669 - Psyr_2530 0.81 +2.1 2,942,669 - Psyr_2530 0.81 -4.2 2,942,669 - Psyr_2530 0.81 -1.8 2,942,669 - Psyr_2530 0.81 -2.8 2,942,669 - Psyr_2530 0.81 +1.7 2,942,669 - Psyr_2530 0.81 +1.1 2,942,669 - Psyr_2530 0.81 +1.7 2,942,669 - Psyr_2530 0.81 +2.7 2,942,669 - Psyr_2530 0.81 +2.1 2,942,901 + +2.9 2,942,901 + +3.8 2,942,901 + +2.9 2,942,901 + +0.1 2,942,901 + +2.7 2,942,901 + -0.3 2,942,902 - +1.7 2,942,902 - +1.7 2,942,902 - +1.1 2,943,063 + -0.7 2,943,198 + Psyr_2531 0.11 +0.1 2,943,198 + Psyr_2531 0.11 +2.7 2,943,198 + Psyr_2531 0.11 -2.7 2,943,199 - Psyr_2531 0.11 +0.1 2,943,202 - Psyr_2531 0.11 -0.5 2,943,257 + Psyr_2531 0.17 -2.1 2,943,805 - Psyr_2531 0.77 -2.4 2,943,805 - Psyr_2531 0.77 -3.8 2,944,120 - -1.5 2,944,120 - -2.0 2,944,131 + Psyr_2532 0.10 +2.1 2,944,131 + Psyr_2532 0.10 +1.1 2,944,132 - Psyr_2532 0.10 -2.3 2,944,132 - Psyr_2532 0.10 -1.5 2,944,309 + Psyr_2532 0.30 -0.5 2,944,310 - Psyr_2532 0.30 -2.9 2,944,355 + Psyr_2532 0.35 -0.2 2,944,356 - Psyr_2532 0.35 -0.4 2,944,356 - Psyr_2532 0.35 +0.1 2,944,399 - Psyr_2532 0.40 -1.1 2,944,465 - Psyr_2532 0.47 +1.1 2,944,566 + Psyr_2532 0.58 +2.4 2,944,567 - Psyr_2532 0.58 +2.4 2,944,584 + Psyr_2532 0.60 -1.2 2,944,732 - Psyr_2532 0.77 -4.7 2,944,732 - Psyr_2532 0.77 +2.1 2,944,974 - +3.4
Or see this region's nucleotide sequence