Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2455 and Psyr_2456 are separated by 100 nucleotides Psyr_2456 and Psyr_2457 are separated by 27 nucleotides
Psyr_2455: Psyr_2455 - Oxidoreductase, N-terminal:Oxidoreductase, C-terminal, at 2,843,302 to 2,844,450
_2455
Psyr_2456: Psyr_2456 - Short-chain dehydrogenase/reductase SDR, at 2,844,551 to 2,845,318
_2456
Psyr_2457: Psyr_2457 - Aminoglycoside phosphotransferase, at 2,845,346 to 2,846,413
_2457
Position (kb)
2844
2845
2846 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 2843.565 kb on + strand, within Psyr_2455 at 2843.570 kb on + strand, within Psyr_2455 at 2843.655 kb on - strand, within Psyr_2455 at 2843.788 kb on + strand, within Psyr_2455 at 2844.032 kb on + strand, within Psyr_2455 at 2844.033 kb on - strand, within Psyr_2455 at 2844.033 kb on - strand, within Psyr_2455 at 2844.033 kb on - strand, within Psyr_2455 at 2844.033 kb on - strand, within Psyr_2455 at 2844.038 kb on + strand, within Psyr_2455 at 2844.128 kb on + strand, within Psyr_2455 at 2844.208 kb on + strand, within Psyr_2455 at 2844.208 kb on + strand, within Psyr_2455 at 2844.595 kb on + strand at 2844.596 kb on - strand at 2844.597 kb on + strand at 2844.597 kb on + strand at 2844.597 kb on + strand at 2844.597 kb on + strand at 2844.598 kb on - strand at 2844.769 kb on + strand, within Psyr_2456 at 2845.095 kb on - strand, within Psyr_2456 at 2845.095 kb on - strand, within Psyr_2456 at 2845.302 kb on - strand at 2845.458 kb on + strand, within Psyr_2457 at 2845.458 kb on + strand, within Psyr_2457 at 2845.458 kb on + strand, within Psyr_2457 at 2845.458 kb on + strand, within Psyr_2457 at 2845.458 kb on + strand, within Psyr_2457 at 2845.459 kb on + strand, within Psyr_2457 at 2845.459 kb on - strand at 2845.459 kb on - strand, within Psyr_2457 at 2845.459 kb on - strand, within Psyr_2457 at 2845.459 kb on - strand, within Psyr_2457 at 2845.503 kb on + strand, within Psyr_2457 at 2845.503 kb on + strand, within Psyr_2457 at 2845.503 kb on + strand, within Psyr_2457 at 2845.504 kb on - strand, within Psyr_2457 at 2845.504 kb on - strand, within Psyr_2457 at 2845.504 kb on - strand, within Psyr_2457 at 2845.504 kb on - strand, within Psyr_2457 at 2845.504 kb on - strand, within Psyr_2457 at 2845.507 kb on - strand, within Psyr_2457 at 2845.507 kb on - strand, within Psyr_2457 at 2845.523 kb on + strand, within Psyr_2457 at 2845.548 kb on + strand, within Psyr_2457 at 2845.548 kb on + strand, within Psyr_2457 at 2845.548 kb on + strand, within Psyr_2457 at 2845.548 kb on + strand, within Psyr_2457 at 2845.904 kb on + strand, within Psyr_2457 at 2845.904 kb on + strand, within Psyr_2457 at 2845.904 kb on + strand, within Psyr_2457 at 2845.905 kb on - strand, within Psyr_2457 at 2845.908 kb on + strand, within Psyr_2457 at 2845.909 kb on - strand, within Psyr_2457 at 2845.970 kb on + strand, within Psyr_2457 at 2846.082 kb on + strand, within Psyr_2457 at 2846.082 kb on + strand, within Psyr_2457 at 2846.083 kb on - strand, within Psyr_2457 at 2846.124 kb on + strand, within Psyr_2457 at 2846.124 kb on + strand, within Psyr_2457 at 2846.266 kb on - strand, within Psyr_2457 at 2846.266 kb on - strand, within Psyr_2457 at 2846.266 kb on - strand, within Psyr_2457
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 2,843,565 + Psyr_2455 0.23 +0.1 2,843,570 + Psyr_2455 0.23 -2.2 2,843,655 - Psyr_2455 0.31 -0.7 2,843,788 + Psyr_2455 0.42 +3.1 2,844,032 + Psyr_2455 0.64 +0.7 2,844,033 - Psyr_2455 0.64 +1.6 2,844,033 - Psyr_2455 0.64 -0.2 2,844,033 - Psyr_2455 0.64 +3.4 2,844,033 - Psyr_2455 0.64 +0.8 2,844,038 + Psyr_2455 0.64 +4.0 2,844,128 + Psyr_2455 0.72 +1.6 2,844,208 + Psyr_2455 0.79 +3.4 2,844,208 + Psyr_2455 0.79 -3.8 2,844,595 + +0.1 2,844,596 - -0.9 2,844,597 + +3.1 2,844,597 + +2.6 2,844,597 + +0.2 2,844,597 + -1.6 2,844,598 - -2.5 2,844,769 + Psyr_2456 0.28 -1.0 2,845,095 - Psyr_2456 0.71 -3.3 2,845,095 - Psyr_2456 0.71 +0.1 2,845,302 - +1.6 2,845,458 + Psyr_2457 0.10 -0.3 2,845,458 + Psyr_2457 0.10 -1.3 2,845,458 + Psyr_2457 0.10 -1.5 2,845,458 + Psyr_2457 0.10 -1.8 2,845,458 + Psyr_2457 0.10 +1.6 2,845,459 + Psyr_2457 0.11 +0.1 2,845,459 - +1.1 2,845,459 - Psyr_2457 0.11 +2.4 2,845,459 - Psyr_2457 0.11 +0.1 2,845,459 - Psyr_2457 0.11 -2.3 2,845,503 + Psyr_2457 0.15 -2.7 2,845,503 + Psyr_2457 0.15 +0.1 2,845,503 + Psyr_2457 0.15 +1.1 2,845,504 - Psyr_2457 0.15 +0.4 2,845,504 - Psyr_2457 0.15 -3.0 2,845,504 - Psyr_2457 0.15 -2.5 2,845,504 - Psyr_2457 0.15 +1.6 2,845,504 - Psyr_2457 0.15 -2.1 2,845,507 - Psyr_2457 0.15 -1.4 2,845,507 - Psyr_2457 0.15 -0.3 2,845,523 + Psyr_2457 0.17 +1.1 2,845,548 + Psyr_2457 0.19 -4.1 2,845,548 + Psyr_2457 0.19 +1.7 2,845,548 + Psyr_2457 0.19 +3.2 2,845,548 + Psyr_2457 0.19 +2.3 2,845,904 + Psyr_2457 0.52 -2.9 2,845,904 + Psyr_2457 0.52 +2.4 2,845,904 + Psyr_2457 0.52 +0.8 2,845,905 - Psyr_2457 0.52 -4.5 2,845,908 + Psyr_2457 0.53 +0.1 2,845,909 - Psyr_2457 0.53 +0.1 2,845,970 + Psyr_2457 0.58 +1.6 2,846,082 + Psyr_2457 0.69 +4.4 2,846,082 + Psyr_2457 0.69 +0.1 2,846,083 - Psyr_2457 0.69 +0.1 2,846,124 + Psyr_2457 0.73 -3.0 2,846,124 + Psyr_2457 0.73 -0.7 2,846,266 - Psyr_2457 0.86 +0.1 2,846,266 - Psyr_2457 0.86 -1.7 2,846,266 - Psyr_2457 0.86 +4.5
Or see this region's nucleotide sequence