Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2397

Experiment: KB with Mitomycin C 0.625 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2396 and Psyr_2397 are separated by 97 nucleotidesPsyr_2397 and Psyr_2398 are separated by 7 nucleotides Psyr_2396: Psyr_2396 - Tartrate dehydrogenase, at 2,778,054 to 2,779,175 _2396 Psyr_2397: Psyr_2397 - transcriptional regulator, LysR family, at 2,779,273 to 2,780,187 _2397 Psyr_2398: Psyr_2398 - ABC transporter, at 2,780,195 to 2,781,349 _2398 Position (kb) 2779 2780 2781Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 2778.728 kb on - strand, within Psyr_2396at 2778.994 kb on + strand, within Psyr_2396at 2778.998 kb on - strand, within Psyr_2396at 2779.021 kb on + strand, within Psyr_2396at 2779.021 kb on + strand, within Psyr_2396at 2779.127 kb on + strandat 2779.217 kb on - strandat 2779.229 kb on + strandat 2779.375 kb on + strand, within Psyr_2397at 2779.375 kb on + strand, within Psyr_2397at 2779.389 kb on + strand, within Psyr_2397at 2779.390 kb on - strand, within Psyr_2397at 2779.390 kb on - strand, within Psyr_2397at 2780.062 kb on + strand, within Psyr_2397at 2780.062 kb on + strand, within Psyr_2397at 2780.063 kb on - strand, within Psyr_2397at 2780.153 kb on - strandat 2780.244 kb on + strandat 2780.412 kb on - strand, within Psyr_2398at 2780.745 kb on + strand, within Psyr_2398at 2780.745 kb on + strand, within Psyr_2398at 2780.745 kb on + strand, within Psyr_2398at 2780.746 kb on - strand, within Psyr_2398at 2781.060 kb on + strand, within Psyr_2398

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
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2,778,728 - Psyr_2396 0.60 -3.6
2,778,994 + Psyr_2396 0.84 -0.4
2,778,998 - Psyr_2396 0.84 +3.1
2,779,021 + Psyr_2396 0.86 +1.7
2,779,021 + Psyr_2396 0.86 +2.7
2,779,127 + -2.7
2,779,217 - -1.0
2,779,229 + +2.9
2,779,375 + Psyr_2397 0.11 +4.3
2,779,375 + Psyr_2397 0.11 -3.5
2,779,389 + Psyr_2397 0.13 +3.8
2,779,390 - Psyr_2397 0.13 +0.1
2,779,390 - Psyr_2397 0.13 +1.1
2,780,062 + Psyr_2397 0.86 +1.1
2,780,062 + Psyr_2397 0.86 +1.7
2,780,063 - Psyr_2397 0.86 -2.0
2,780,153 - -1.3
2,780,244 + +1.7
2,780,412 - Psyr_2398 0.19 +3.9
2,780,745 + Psyr_2398 0.48 -1.6
2,780,745 + Psyr_2398 0.48 +2.1
2,780,745 + Psyr_2398 0.48 +1.7
2,780,746 - Psyr_2398 0.48 -2.8
2,781,060 + Psyr_2398 0.75 -3.8

Or see this region's nucleotide sequence