Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2379 and Psyr_2380 are separated by 206 nucleotides Psyr_2380 and Psyr_2381 are separated by 39 nucleotides
Psyr_2379: Psyr_2379 - amino acid/polyamine/organocation transporter, APC superfamily, at 2,758,476 to 2,759,789
_2379
Psyr_2380: Psyr_2380 - hypothetical protein, at 2,759,996 to 2,760,238
_2380
Psyr_2381: Psyr_2381 - Allergen V5/Tpx-1 related protein, at 2,760,278 to 2,761,210
_2381
Position (kb)
2759
2760
2761 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3
4 at 2759.061 kb on + strand, within Psyr_2379 at 2759.061 kb on + strand, within Psyr_2379 at 2759.061 kb on + strand, within Psyr_2379 at 2759.061 kb on + strand, within Psyr_2379 at 2759.061 kb on + strand, within Psyr_2379 at 2759.062 kb on - strand, within Psyr_2379 at 2759.062 kb on - strand, within Psyr_2379 at 2759.062 kb on - strand, within Psyr_2379 at 2759.062 kb on - strand, within Psyr_2379 at 2759.065 kb on + strand, within Psyr_2379 at 2759.065 kb on + strand, within Psyr_2379 at 2759.065 kb on + strand, within Psyr_2379 at 2759.065 kb on + strand, within Psyr_2379 at 2759.065 kb on + strand, within Psyr_2379 at 2759.066 kb on - strand, within Psyr_2379 at 2759.066 kb on - strand, within Psyr_2379 at 2759.066 kb on - strand, within Psyr_2379 at 2759.066 kb on - strand, within Psyr_2379 at 2759.066 kb on - strand, within Psyr_2379 at 2759.066 kb on - strand, within Psyr_2379 at 2759.066 kb on - strand, within Psyr_2379 at 2759.066 kb on - strand, within Psyr_2379 at 2759.066 kb on - strand, within Psyr_2379 at 2759.111 kb on - strand, within Psyr_2379 at 2759.176 kb on + strand, within Psyr_2379 at 2759.176 kb on + strand, within Psyr_2379 at 2759.177 kb on - strand, within Psyr_2379 at 2759.440 kb on + strand, within Psyr_2379 at 2759.440 kb on + strand, within Psyr_2379 at 2759.551 kb on + strand, within Psyr_2379 at 2759.552 kb on - strand, within Psyr_2379 at 2759.578 kb on + strand, within Psyr_2379 at 2759.578 kb on + strand, within Psyr_2379 at 2759.810 kb on - strand at 2759.810 kb on - strand at 2759.912 kb on + strand at 2760.004 kb on + strand at 2760.005 kb on - strand at 2760.182 kb on - strand, within Psyr_2380 at 2760.182 kb on - strand, within Psyr_2380 at 2760.189 kb on + strand, within Psyr_2380 at 2760.189 kb on + strand, within Psyr_2380 at 2760.190 kb on - strand, within Psyr_2380 at 2760.204 kb on + strand, within Psyr_2380 at 2760.204 kb on + strand, within Psyr_2380 at 2760.204 kb on + strand, within Psyr_2380 at 2760.205 kb on - strand, within Psyr_2380 at 2760.205 kb on - strand, within Psyr_2380 at 2760.205 kb on - strand, within Psyr_2380 at 2760.205 kb on - strand, within Psyr_2380 at 2760.205 kb on - strand, within Psyr_2380 at 2760.205 kb on - strand, within Psyr_2380 at 2760.256 kb on - strand at 2760.389 kb on + strand, within Psyr_2381 at 2760.389 kb on + strand, within Psyr_2381 at 2760.502 kb on + strand, within Psyr_2381 at 2760.574 kb on - strand, within Psyr_2381 at 2760.625 kb on - strand, within Psyr_2381 at 2760.707 kb on + strand, within Psyr_2381 at 2760.953 kb on + strand, within Psyr_2381 at 2760.954 kb on - strand, within Psyr_2381 at 2760.954 kb on - strand, within Psyr_2381 at 2760.954 kb on - strand, within Psyr_2381 at 2760.958 kb on + strand, within Psyr_2381
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 2,759,061 + Psyr_2379 0.45 -3.5 2,759,061 + Psyr_2379 0.45 +2.9 2,759,061 + Psyr_2379 0.45 -4.3 2,759,061 + Psyr_2379 0.45 +1.1 2,759,061 + Psyr_2379 0.45 -3.1 2,759,062 - Psyr_2379 0.45 -2.7 2,759,062 - Psyr_2379 0.45 +2.1 2,759,062 - Psyr_2379 0.45 +1.1 2,759,062 - Psyr_2379 0.45 +2.1 2,759,065 + Psyr_2379 0.45 +0.1 2,759,065 + Psyr_2379 0.45 -2.3 2,759,065 + Psyr_2379 0.45 +0.1 2,759,065 + Psyr_2379 0.45 +0.1 2,759,065 + Psyr_2379 0.45 +0.1 2,759,066 - Psyr_2379 0.45 +3.5 2,759,066 - Psyr_2379 0.45 -3.6 2,759,066 - Psyr_2379 0.45 -2.3 2,759,066 - Psyr_2379 0.45 +0.5 2,759,066 - Psyr_2379 0.45 +1.1 2,759,066 - Psyr_2379 0.45 +2.7 2,759,066 - Psyr_2379 0.45 +1.9 2,759,066 - Psyr_2379 0.45 -3.1 2,759,066 - Psyr_2379 0.45 -0.7 2,759,111 - Psyr_2379 0.48 +0.4 2,759,176 + Psyr_2379 0.53 +0.1 2,759,176 + Psyr_2379 0.53 +0.1 2,759,177 - Psyr_2379 0.53 -1.2 2,759,440 + Psyr_2379 0.73 +3.3 2,759,440 + Psyr_2379 0.73 -2.7 2,759,551 + Psyr_2379 0.82 -2.4 2,759,552 - Psyr_2379 0.82 +0.1 2,759,578 + Psyr_2379 0.84 +0.1 2,759,578 + Psyr_2379 0.84 -0.5 2,759,810 - +0.4 2,759,810 - +0.1 2,759,912 + +1.7 2,760,004 + -4.2 2,760,005 - -3.2 2,760,182 - Psyr_2380 0.77 +1.7 2,760,182 - Psyr_2380 0.77 +1.1 2,760,189 + Psyr_2380 0.79 +0.1 2,760,189 + Psyr_2380 0.79 -1.9 2,760,190 - Psyr_2380 0.80 +2.7 2,760,204 + Psyr_2380 0.86 -2.5 2,760,204 + Psyr_2380 0.86 -2.9 2,760,204 + Psyr_2380 0.86 +1.7 2,760,205 - Psyr_2380 0.86 +0.1 2,760,205 - Psyr_2380 0.86 +0.1 2,760,205 - Psyr_2380 0.86 -3.6 2,760,205 - Psyr_2380 0.86 +0.1 2,760,205 - Psyr_2380 0.86 -4.8 2,760,205 - Psyr_2380 0.86 -3.0 2,760,256 - -0.9 2,760,389 + Psyr_2381 0.12 +1.7 2,760,389 + Psyr_2381 0.12 +4.0 2,760,502 + Psyr_2381 0.24 -1.8 2,760,574 - Psyr_2381 0.32 +3.1 2,760,625 - Psyr_2381 0.37 -1.5 2,760,707 + Psyr_2381 0.46 +0.2 2,760,953 + Psyr_2381 0.72 -3.3 2,760,954 - Psyr_2381 0.72 -0.9 2,760,954 - Psyr_2381 0.72 -0.5 2,760,954 - Psyr_2381 0.72 -4.4 2,760,958 + Psyr_2381 0.73 +0.3
Or see this region's nucleotide sequence