Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2366

Experiment: KB with Mitomycin C 0.625 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2365 and Psyr_2366 are separated by 356 nucleotidesPsyr_2366 and Psyr_2367 overlap by 4 nucleotidesPsyr_2367 and Psyr_2368 are separated by 11 nucleotides Psyr_2365: Psyr_2365 - Radical SAM, at 2,742,650 to 2,743,870 _2365 Psyr_2366: Psyr_2366 - ABC transporter, at 2,744,227 to 2,744,973 _2366 Psyr_2367: Psyr_2367 - ABC-3, at 2,744,970 to 2,745,839 _2367 Psyr_2368: Psyr_2368 - Periplasmic solute binding protein, at 2,745,851 to 2,746,747 _2368 Position (kb) 2744 2745Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 2743.284 kb on + strand, within Psyr_2365at 2743.284 kb on + strand, within Psyr_2365at 2743.284 kb on + strand, within Psyr_2365at 2743.452 kb on + strand, within Psyr_2365at 2743.453 kb on - strand, within Psyr_2365at 2743.516 kb on - strand, within Psyr_2365at 2743.575 kb on + strand, within Psyr_2365at 2743.657 kb on - strand, within Psyr_2365at 2743.726 kb on + strand, within Psyr_2365at 2743.726 kb on + strand, within Psyr_2365at 2743.727 kb on - strand, within Psyr_2365at 2743.728 kb on + strand, within Psyr_2365at 2743.728 kb on + strand, within Psyr_2365at 2743.728 kb on + strand, within Psyr_2365at 2743.728 kb on + strand, within Psyr_2365at 2743.728 kb on + strand, within Psyr_2365at 2743.728 kb on + strand, within Psyr_2365at 2743.729 kb on - strand, within Psyr_2365at 2743.729 kb on - strand, within Psyr_2365at 2743.729 kb on - strand, within Psyr_2365at 2743.729 kb on - strand, within Psyr_2365at 2743.729 kb on - strand, within Psyr_2365at 2743.729 kb on - strand, within Psyr_2365at 2743.805 kb on - strandat 2743.824 kb on + strandat 2743.825 kb on - strandat 2743.825 kb on - strandat 2743.825 kb on - strandat 2743.825 kb on - strandat 2743.861 kb on + strandat 2743.892 kb on + strandat 2743.893 kb on - strandat 2743.981 kb on + strandat 2743.981 kb on + strandat 2743.982 kb on - strandat 2744.076 kb on - strandat 2744.076 kb on - strandat 2744.081 kb on + strandat 2744.188 kb on - strandat 2744.285 kb on + strandat 2744.285 kb on + strandat 2744.286 kb on - strandat 2744.979 kb on + strandat 2744.979 kb on + strandat 2744.979 kb on + strandat 2744.980 kb on - strandat 2745.286 kb on - strand, within Psyr_2367at 2745.286 kb on - strand, within Psyr_2367at 2745.355 kb on + strand, within Psyr_2367at 2745.355 kb on + strand, within Psyr_2367at 2745.355 kb on + strand, within Psyr_2367at 2745.356 kb on - strand, within Psyr_2367at 2745.396 kb on + strand, within Psyr_2367at 2745.396 kb on + strand, within Psyr_2367at 2745.396 kb on + strand, within Psyr_2367at 2745.396 kb on + strand, within Psyr_2367at 2745.396 kb on + strand, within Psyr_2367at 2745.396 kb on + strand, within Psyr_2367at 2745.397 kb on - strand, within Psyr_2367at 2745.397 kb on - strandat 2745.397 kb on - strand, within Psyr_2367at 2745.447 kb on + strand, within Psyr_2367at 2745.448 kb on - strand, within Psyr_2367at 2745.846 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
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2,743,284 + Psyr_2365 0.52 -1.4
2,743,284 + Psyr_2365 0.52 -2.1
2,743,284 + Psyr_2365 0.52 +3.1
2,743,452 + Psyr_2365 0.66 +0.1
2,743,453 - Psyr_2365 0.66 +2.4
2,743,516 - Psyr_2365 0.71 -4.9
2,743,575 + Psyr_2365 0.76 +3.6
2,743,657 - Psyr_2365 0.82 +0.1
2,743,726 + Psyr_2365 0.88 -2.7
2,743,726 + Psyr_2365 0.88 +2.7
2,743,727 - Psyr_2365 0.88 -1.7
2,743,728 + Psyr_2365 0.88 +0.1
2,743,728 + Psyr_2365 0.88 -3.2
2,743,728 + Psyr_2365 0.88 +0.1
2,743,728 + Psyr_2365 0.88 +1.0
2,743,728 + Psyr_2365 0.88 -3.0
2,743,728 + Psyr_2365 0.88 -3.1
2,743,729 - Psyr_2365 0.88 -4.4
2,743,729 - Psyr_2365 0.88 +0.1
2,743,729 - Psyr_2365 0.88 +0.1
2,743,729 - Psyr_2365 0.88 -2.5
2,743,729 - Psyr_2365 0.88 +2.1
2,743,729 - Psyr_2365 0.88 +1.7
2,743,805 - -4.0
2,743,824 + -1.1
2,743,825 - +0.1
2,743,825 - -3.1
2,743,825 - +0.1
2,743,825 - -4.4
2,743,861 + +3.4
2,743,892 + +0.1
2,743,893 - -3.6
2,743,981 + -4.5
2,743,981 + +0.1
2,743,982 - -2.4
2,744,076 - +0.1
2,744,076 - +0.1
2,744,081 + -2.6
2,744,188 - -0.4
2,744,285 + +0.1
2,744,285 + +3.4
2,744,286 - +1.1
2,744,979 + -1.3
2,744,979 + +3.1
2,744,979 + -0.1
2,744,980 - +1.1
2,745,286 - Psyr_2367 0.36 +1.1
2,745,286 - Psyr_2367 0.36 +0.1
2,745,355 + Psyr_2367 0.44 +1.0
2,745,355 + Psyr_2367 0.44 +1.1
2,745,355 + Psyr_2367 0.44 +3.6
2,745,356 - Psyr_2367 0.44 +1.7
2,745,396 + Psyr_2367 0.49 -3.5
2,745,396 + Psyr_2367 0.49 -1.3
2,745,396 + Psyr_2367 0.49 -1.2
2,745,396 + Psyr_2367 0.49 +3.8
2,745,396 + Psyr_2367 0.49 -2.2
2,745,396 + Psyr_2367 0.49 +1.7
2,745,397 - Psyr_2367 0.49 +2.1
2,745,397 - -2.6
2,745,397 - Psyr_2367 0.49 -0.9
2,745,447 + Psyr_2367 0.55 +0.1
2,745,448 - Psyr_2367 0.55 -2.2
2,745,846 - -4.1

Or see this region's nucleotide sequence