Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2335

Experiment: KB with Mitomycin C 0.625 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_2333 and Psyr_2334 are separated by 3 nucleotidesPsyr_2334 and Psyr_2335 overlap by 4 nucleotidesPsyr_2335 and Psyr_2336 are separated by 241 nucleotides Psyr_2333: Psyr_2333 - Binding-protein-dependent transport systems inner membrane component, at 2,710,800 to 2,711,594 _2333 Psyr_2334: Psyr_2334 - Binding-protein-dependent transport systems inner membrane component, at 2,711,598 to 2,712,470 _2334 Psyr_2335: Psyr_2335 - ABC transporter, at 2,712,467 to 2,713,495 _2335 Psyr_2336: Psyr_2336 - transcriptional regulator, IclR family, at 2,713,737 to 2,714,576 _2336 Position (kb) 2712 2713 2714Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3 4 5at 2711.725 kb on + strand, within Psyr_2334at 2711.734 kb on + strand, within Psyr_2334at 2711.734 kb on + strand, within Psyr_2334at 2711.734 kb on + strand, within Psyr_2334at 2711.734 kb on + strand, within Psyr_2334at 2711.735 kb on - strand, within Psyr_2334at 2712.013 kb on + strand, within Psyr_2334at 2712.013 kb on + strand, within Psyr_2334at 2712.014 kb on - strand, within Psyr_2334at 2712.187 kb on + strand, within Psyr_2334at 2712.187 kb on + strand, within Psyr_2334at 2712.187 kb on + strand, within Psyr_2334at 2712.188 kb on - strand, within Psyr_2334at 2712.188 kb on - strand, within Psyr_2334at 2712.271 kb on + strand, within Psyr_2334at 2712.271 kb on + strand, within Psyr_2334at 2712.295 kb on + strand, within Psyr_2334at 2712.295 kb on + strand, within Psyr_2334at 2712.295 kb on + strand, within Psyr_2334at 2712.295 kb on + strand, within Psyr_2334at 2712.295 kb on + strand, within Psyr_2334at 2712.295 kb on + strand, within Psyr_2334at 2712.295 kb on + strand, within Psyr_2334at 2712.295 kb on + strand, within Psyr_2334at 2712.295 kb on + strand, within Psyr_2334at 2712.295 kb on + strand, within Psyr_2334at 2712.295 kb on + strand, within Psyr_2334at 2712.296 kb on - strand, within Psyr_2334at 2712.296 kb on - strand, within Psyr_2334at 2712.296 kb on - strand, within Psyr_2334at 2712.296 kb on - strand, within Psyr_2334at 2712.296 kb on - strand, within Psyr_2334at 2712.296 kb on - strand, within Psyr_2334at 2712.310 kb on + strand, within Psyr_2334at 2712.310 kb on + strand, within Psyr_2334at 2712.311 kb on - strand, within Psyr_2334at 2712.311 kb on - strand, within Psyr_2334at 2712.400 kb on + strandat 2712.400 kb on + strandat 2712.400 kb on + strandat 2712.400 kb on + strandat 2712.400 kb on + strandat 2712.400 kb on + strandat 2712.400 kb on + strandat 2712.400 kb on + strandat 2712.400 kb on + strandat 2712.401 kb on - strandat 2712.401 kb on - strandat 2712.401 kb on - strandat 2712.401 kb on - strandat 2712.401 kb on - strandat 2712.401 kb on - strandat 2712.401 kb on - strandat 2712.401 kb on - strandat 2712.401 kb on - strandat 2712.401 kb on - strandat 2712.572 kb on + strand, within Psyr_2335at 2712.572 kb on + strand, within Psyr_2335at 2712.572 kb on + strand, within Psyr_2335at 2712.572 kb on + strand, within Psyr_2335at 2712.573 kb on - strand, within Psyr_2335at 2712.573 kb on - strand, within Psyr_2335at 2712.573 kb on - strand, within Psyr_2335at 2712.575 kb on + strand, within Psyr_2335at 2712.575 kb on + strand, within Psyr_2335at 2712.840 kb on + strand, within Psyr_2335at 2712.840 kb on + strand, within Psyr_2335at 2712.840 kb on + strand, within Psyr_2335at 2712.840 kb on + strand, within Psyr_2335at 2712.840 kb on + strand, within Psyr_2335at 2712.840 kb on + strand, within Psyr_2335at 2712.840 kb on + strand, within Psyr_2335at 2712.840 kb on + strand, within Psyr_2335at 2712.841 kb on - strand, within Psyr_2335at 2712.841 kb on - strand, within Psyr_2335at 2712.841 kb on - strand, within Psyr_2335at 2712.841 kb on - strand, within Psyr_2335at 2712.940 kb on + strand, within Psyr_2335at 2713.246 kb on - strand, within Psyr_2335at 2713.246 kb on - strand, within Psyr_2335at 2713.246 kb on - strand, within Psyr_2335at 2713.685 kb on - strandat 2713.702 kb on + strandat 2713.720 kb on + strandat 2713.721 kb on - strandat 2713.723 kb on - strandat 2713.730 kb on + strandat 2713.730 kb on + strandat 2713.730 kb on + strandat 2713.731 kb on - strandat 2713.731 kb on - strandat 2714.250 kb on + strand, within Psyr_2336

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
remove
2,711,725 + Psyr_2334 0.15 -1.4
2,711,734 + Psyr_2334 0.16 +1.1
2,711,734 + Psyr_2334 0.16 -0.2
2,711,734 + Psyr_2334 0.16 +3.4
2,711,734 + Psyr_2334 0.16 +0.6
2,711,735 - Psyr_2334 0.16 -3.2
2,712,013 + Psyr_2334 0.48 +0.1
2,712,013 + Psyr_2334 0.48 +0.1
2,712,014 - Psyr_2334 0.48 -2.6
2,712,187 + Psyr_2334 0.67 -0.3
2,712,187 + Psyr_2334 0.67 +0.1
2,712,187 + Psyr_2334 0.67 +0.1
2,712,188 - Psyr_2334 0.68 -1.3
2,712,188 - Psyr_2334 0.68 -2.9
2,712,271 + Psyr_2334 0.77 -1.4
2,712,271 + Psyr_2334 0.77 -2.9
2,712,295 + Psyr_2334 0.80 -2.6
2,712,295 + Psyr_2334 0.80 -1.7
2,712,295 + Psyr_2334 0.80 +2.1
2,712,295 + Psyr_2334 0.80 -6.0
2,712,295 + Psyr_2334 0.80 +0.1
2,712,295 + Psyr_2334 0.80 -1.8
2,712,295 + Psyr_2334 0.80 +0.1
2,712,295 + Psyr_2334 0.80 -2.6
2,712,295 + Psyr_2334 0.80 +3.1
2,712,295 + Psyr_2334 0.80 -2.1
2,712,295 + Psyr_2334 0.80 -2.8
2,712,296 - Psyr_2334 0.80 -2.2
2,712,296 - Psyr_2334 0.80 -2.1
2,712,296 - Psyr_2334 0.80 +0.1
2,712,296 - Psyr_2334 0.80 +5.2
2,712,296 - Psyr_2334 0.80 +2.7
2,712,296 - Psyr_2334 0.80 +0.1
2,712,310 + Psyr_2334 0.82 -2.3
2,712,310 + Psyr_2334 0.82 -4.4
2,712,311 - Psyr_2334 0.82 +2.4
2,712,311 - Psyr_2334 0.82 -1.4
2,712,400 + +0.1
2,712,400 + +0.0
2,712,400 + -0.5
2,712,400 + +2.9
2,712,400 + +0.1
2,712,400 + +0.1
2,712,400 + +1.1
2,712,400 + -3.9
2,712,400 + +1.1
2,712,401 - +0.1
2,712,401 - -2.0
2,712,401 - -3.3
2,712,401 - +0.1
2,712,401 - +0.1
2,712,401 - -2.3
2,712,401 - -3.2
2,712,401 - -0.9
2,712,401 - +2.1
2,712,401 - +2.4
2,712,572 + Psyr_2335 0.10 -4.0
2,712,572 + Psyr_2335 0.10 +4.0
2,712,572 + Psyr_2335 0.10 -2.0
2,712,572 + Psyr_2335 0.10 -2.0
2,712,573 - Psyr_2335 0.10 -1.1
2,712,573 - Psyr_2335 0.10 -1.1
2,712,573 - Psyr_2335 0.10 -1.5
2,712,575 + Psyr_2335 0.10 +0.1
2,712,575 + Psyr_2335 0.10 -1.5
2,712,840 + Psyr_2335 0.36 -1.7
2,712,840 + Psyr_2335 0.36 -0.5
2,712,840 + Psyr_2335 0.36 -1.6
2,712,840 + Psyr_2335 0.36 -2.2
2,712,840 + Psyr_2335 0.36 -2.9
2,712,840 + Psyr_2335 0.36 -1.6
2,712,840 + Psyr_2335 0.36 +0.1
2,712,840 + Psyr_2335 0.36 +4.4
2,712,841 - Psyr_2335 0.36 +0.7
2,712,841 - Psyr_2335 0.36 +3.6
2,712,841 - Psyr_2335 0.36 +2.9
2,712,841 - Psyr_2335 0.36 +0.1
2,712,940 + Psyr_2335 0.46 -0.1
2,713,246 - Psyr_2335 0.76 +3.1
2,713,246 - Psyr_2335 0.76 +0.1
2,713,246 - Psyr_2335 0.76 +1.7
2,713,685 - +0.1
2,713,702 + +0.1
2,713,720 + +2.7
2,713,721 - -1.8
2,713,723 - +0.1
2,713,730 + +1.7
2,713,730 + -0.3
2,713,730 + -0.9
2,713,731 - -2.9
2,713,731 - -4.9
2,714,250 + Psyr_2336 0.61 -2.0

Or see this region's nucleotide sequence