Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2331

Experiment: KB with Mitomycin C 0.625 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2330 and Psyr_2331 overlap by 4 nucleotidesPsyr_2331 and Psyr_2332 overlap by 4 nucleotidesPsyr_2332 and Psyr_2333 are separated by 16 nucleotides Psyr_2330: Psyr_2330 - FAD dependent oxidoreductase, at 2,707,924 to 2,709,108 _2330 Psyr_2331: Psyr_2331 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase:BFD-like [2Fe-2S]-binding region, at 2,709,105 to 2,710,496 _2331 Psyr_2332: Psyr_2332 - conserved hypothetical protein, at 2,710,493 to 2,710,783 _2332 Psyr_2333: Psyr_2333 - Binding-protein-dependent transport systems inner membrane component, at 2,710,800 to 2,711,594 _2333 Position (kb) 2709 2710 2711Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 2708.184 kb on - strand, within Psyr_2330at 2708.363 kb on + strand, within Psyr_2330at 2708.363 kb on + strand, within Psyr_2330at 2708.364 kb on - strand, within Psyr_2330at 2708.364 kb on - strand, within Psyr_2330at 2708.364 kb on - strand, within Psyr_2330at 2708.447 kb on + strand, within Psyr_2330at 2708.447 kb on + strand, within Psyr_2330at 2708.448 kb on - strand, within Psyr_2330at 2708.448 kb on - strand, within Psyr_2330at 2708.963 kb on + strand, within Psyr_2330at 2709.479 kb on + strand, within Psyr_2331at 2709.480 kb on - strand, within Psyr_2331at 2709.480 kb on - strand, within Psyr_2331at 2709.480 kb on - strand, within Psyr_2331at 2709.604 kb on + strand, within Psyr_2331at 2709.604 kb on + strand, within Psyr_2331at 2709.604 kb on + strand, within Psyr_2331at 2709.604 kb on + strand, within Psyr_2331at 2709.604 kb on + strand, within Psyr_2331at 2709.604 kb on + strand, within Psyr_2331at 2709.604 kb on + strand, within Psyr_2331at 2709.605 kb on - strand, within Psyr_2331at 2709.605 kb on - strand, within Psyr_2331at 2709.605 kb on - strand, within Psyr_2331at 2709.605 kb on - strand, within Psyr_2331at 2709.605 kb on - strand, within Psyr_2331at 2709.773 kb on + strand, within Psyr_2331at 2709.796 kb on - strand, within Psyr_2331at 2709.877 kb on + strand, within Psyr_2331at 2709.877 kb on + strand, within Psyr_2331at 2709.877 kb on + strand, within Psyr_2331at 2709.877 kb on + strand, within Psyr_2331at 2709.877 kb on + strand, within Psyr_2331at 2709.877 kb on + strand, within Psyr_2331at 2709.877 kb on + strand, within Psyr_2331at 2709.877 kb on + strand, within Psyr_2331at 2709.877 kb on + strand, within Psyr_2331at 2709.878 kb on - strand, within Psyr_2331at 2709.878 kb on - strand, within Psyr_2331at 2709.878 kb on - strand, within Psyr_2331at 2709.878 kb on - strand, within Psyr_2331at 2709.878 kb on - strand, within Psyr_2331at 2709.878 kb on - strand, within Psyr_2331at 2709.878 kb on - strand, within Psyr_2331at 2709.878 kb on - strand, within Psyr_2331at 2709.878 kb on - strand, within Psyr_2331at 2709.878 kb on - strand, within Psyr_2331at 2709.878 kb on - strand, within Psyr_2331at 2709.878 kb on - strand, within Psyr_2331at 2709.878 kb on - strand, within Psyr_2331at 2709.878 kb on - strand, within Psyr_2331at 2709.878 kb on - strand, within Psyr_2331at 2709.878 kb on - strand, within Psyr_2331at 2709.878 kb on - strand, within Psyr_2331at 2710.010 kb on - strand, within Psyr_2331at 2710.099 kb on + strand, within Psyr_2331at 2710.100 kb on - strand, within Psyr_2331at 2710.324 kb on + strand, within Psyr_2331at 2710.496 kb on + strandat 2710.496 kb on + strandat 2710.497 kb on - strandat 2710.497 kb on - strandat 2710.497 kb on - strandat 2710.559 kb on + strand, within Psyr_2332at 2710.559 kb on + strand, within Psyr_2332at 2710.560 kb on - strand, within Psyr_2332at 2710.560 kb on - strand, within Psyr_2332at 2710.560 kb on - strand, within Psyr_2332at 2710.560 kb on - strand, within Psyr_2332at 2710.733 kb on - strand, within Psyr_2332at 2710.819 kb on - strandat 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.933 kb on + strand, within Psyr_2333at 2710.934 kb on - strand, within Psyr_2333at 2710.934 kb on - strand, within Psyr_2333at 2710.934 kb on - strand, within Psyr_2333at 2710.934 kb on - strand, within Psyr_2333at 2710.934 kb on - strand, within Psyr_2333at 2710.934 kb on - strand, within Psyr_2333at 2710.934 kb on - strand, within Psyr_2333at 2710.934 kb on - strand, within Psyr_2333at 2710.934 kb on - strand, within Psyr_2333at 2710.934 kb on - strand, within Psyr_2333at 2710.934 kb on - strand, within Psyr_2333at 2710.934 kb on - strand, within Psyr_2333at 2710.934 kb on - strand, within Psyr_2333at 2710.934 kb on - strand, within Psyr_2333at 2710.934 kb on - strand, within Psyr_2333at 2710.934 kb on - strand, within Psyr_2333at 2710.934 kb on - strand, within Psyr_2333at 2710.934 kb on - strand, within Psyr_2333at 2710.934 kb on - strand, within Psyr_2333at 2710.934 kb on - strand, within Psyr_2333at 2710.934 kb on - strand, within Psyr_2333at 2710.934 kb on - strand, within Psyr_2333at 2710.934 kb on - strand, within Psyr_2333at 2710.934 kb on - strand, within Psyr_2333at 2710.934 kb on - strand, within Psyr_2333at 2710.934 kb on - strand, within Psyr_2333at 2710.934 kb on - strand, within Psyr_2333at 2711.160 kb on + strand, within Psyr_2333at 2711.160 kb on + strand, within Psyr_2333at 2711.160 kb on + strand, within Psyr_2333at 2711.161 kb on - strand, within Psyr_2333at 2711.161 kb on - strand, within Psyr_2333at 2711.324 kb on + strand, within Psyr_2333at 2711.324 kb on + strand, within Psyr_2333at 2711.324 kb on + strand, within Psyr_2333at 2711.324 kb on + strand, within Psyr_2333at 2711.325 kb on - strand, within Psyr_2333at 2711.325 kb on - strand, within Psyr_2333at 2711.325 kb on - strand, within Psyr_2333at 2711.325 kb on - strand, within Psyr_2333at 2711.325 kb on - strand, within Psyr_2333at 2711.325 kb on - strand, within Psyr_2333at 2711.325 kb on - strand, within Psyr_2333at 2711.407 kb on + strand, within Psyr_2333at 2711.408 kb on - strand, within Psyr_2333at 2711.408 kb on - strand, within Psyr_2333

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
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2,708,184 - Psyr_2330 0.22 -2.9
2,708,363 + Psyr_2330 0.37 +2.4
2,708,363 + Psyr_2330 0.37 +0.1
2,708,364 - Psyr_2330 0.37 -2.2
2,708,364 - Psyr_2330 0.37 -0.5
2,708,364 - Psyr_2330 0.37 +1.1
2,708,447 + Psyr_2330 0.44 +3.6
2,708,447 + Psyr_2330 0.44 +4.1
2,708,448 - Psyr_2330 0.44 +3.1
2,708,448 - Psyr_2330 0.44 +1.1
2,708,963 + Psyr_2330 0.88 +2.1
2,709,479 + Psyr_2331 0.27 +1.7
2,709,480 - Psyr_2331 0.27 +3.7
2,709,480 - Psyr_2331 0.27 +1.7
2,709,480 - Psyr_2331 0.27 -0.1
2,709,604 + Psyr_2331 0.36 +1.1
2,709,604 + Psyr_2331 0.36 +2.4
2,709,604 + Psyr_2331 0.36 -0.9
2,709,604 + Psyr_2331 0.36 +3.6
2,709,604 + Psyr_2331 0.36 -3.5
2,709,604 + Psyr_2331 0.36 +3.8
2,709,604 + Psyr_2331 0.36 +2.1
2,709,605 - Psyr_2331 0.36 +0.1
2,709,605 - Psyr_2331 0.36 +2.9
2,709,605 - Psyr_2331 0.36 -2.9
2,709,605 - Psyr_2331 0.36 +2.9
2,709,605 - Psyr_2331 0.36 +0.2
2,709,773 + Psyr_2331 0.48 -3.2
2,709,796 - Psyr_2331 0.50 +1.6
2,709,877 + Psyr_2331 0.55 +2.4
2,709,877 + Psyr_2331 0.55 +0.3
2,709,877 + Psyr_2331 0.55 +1.1
2,709,877 + Psyr_2331 0.55 +1.1
2,709,877 + Psyr_2331 0.55 +1.1
2,709,877 + Psyr_2331 0.55 +4.2
2,709,877 + Psyr_2331 0.55 +0.1
2,709,877 + Psyr_2331 0.55 +2.7
2,709,877 + Psyr_2331 0.55 +0.1
2,709,878 - Psyr_2331 0.56 +0.1
2,709,878 - Psyr_2331 0.56 -3.4
2,709,878 - Psyr_2331 0.56 -0.3
2,709,878 - Psyr_2331 0.56 +2.7
2,709,878 - Psyr_2331 0.56 +0.7
2,709,878 - Psyr_2331 0.56 +3.1
2,709,878 - Psyr_2331 0.56 -2.9
2,709,878 - Psyr_2331 0.56 -2.1
2,709,878 - Psyr_2331 0.56 +1.1
2,709,878 - Psyr_2331 0.56 +3.3
2,709,878 - Psyr_2331 0.56 +3.6
2,709,878 - Psyr_2331 0.56 -3.4
2,709,878 - Psyr_2331 0.56 +3.1
2,709,878 - Psyr_2331 0.56 +2.1
2,709,878 - Psyr_2331 0.56 +1.1
2,709,878 - Psyr_2331 0.56 -0.1
2,709,878 - Psyr_2331 0.56 +2.1
2,710,010 - Psyr_2331 0.65 +2.7
2,710,099 + Psyr_2331 0.71 +2.4
2,710,100 - Psyr_2331 0.71 -0.7
2,710,324 + Psyr_2331 0.88 +3.6
2,710,496 + -0.9
2,710,496 + +0.1
2,710,497 - -3.1
2,710,497 - +3.7
2,710,497 - -2.2
2,710,559 + Psyr_2332 0.23 -0.8
2,710,559 + Psyr_2332 0.23 -1.9
2,710,560 - Psyr_2332 0.23 +2.4
2,710,560 - Psyr_2332 0.23 +2.1
2,710,560 - Psyr_2332 0.23 +3.8
2,710,560 - Psyr_2332 0.23 -1.1
2,710,733 - Psyr_2332 0.82 -0.1
2,710,819 - +1.1
2,710,933 + Psyr_2333 0.17 -2.2
2,710,933 + Psyr_2333 0.17 +2.1
2,710,933 + Psyr_2333 0.17 +2.1
2,710,933 + Psyr_2333 0.17 -2.1
2,710,933 + Psyr_2333 0.17 +0.1
2,710,933 + Psyr_2333 0.17 +1.7
2,710,933 + Psyr_2333 0.17 -0.3
2,710,933 + Psyr_2333 0.17 +0.1
2,710,933 + Psyr_2333 0.17 -0.3
2,710,933 + Psyr_2333 0.17 +3.3
2,710,933 + Psyr_2333 0.17 +1.2
2,710,933 + Psyr_2333 0.17 +0.8
2,710,933 + Psyr_2333 0.17 +0.1
2,710,933 + Psyr_2333 0.17 +3.9
2,710,933 + Psyr_2333 0.17 +0.2
2,710,933 + Psyr_2333 0.17 -2.5
2,710,933 + Psyr_2333 0.17 +2.4
2,710,933 + Psyr_2333 0.17 +2.9
2,710,933 + Psyr_2333 0.17 +3.6
2,710,933 + Psyr_2333 0.17 +2.7
2,710,933 + Psyr_2333 0.17 -2.1
2,710,933 + Psyr_2333 0.17 -1.7
2,710,933 + Psyr_2333 0.17 -4.5
2,710,933 + Psyr_2333 0.17 -2.5
2,710,933 + Psyr_2333 0.17 +3.4
2,710,933 + Psyr_2333 0.17 +0.7
2,710,933 + Psyr_2333 0.17 +1.5
2,710,933 + Psyr_2333 0.17 -1.1
2,710,933 + Psyr_2333 0.17 +2.1
2,710,933 + Psyr_2333 0.17 +2.4
2,710,933 + Psyr_2333 0.17 +3.3
2,710,933 + Psyr_2333 0.17 +1.1
2,710,934 - Psyr_2333 0.17 +0.1
2,710,934 - Psyr_2333 0.17 +4.2
2,710,934 - Psyr_2333 0.17 -3.2
2,710,934 - Psyr_2333 0.17 +4.0
2,710,934 - Psyr_2333 0.17 +1.1
2,710,934 - Psyr_2333 0.17 -0.1
2,710,934 - Psyr_2333 0.17 -0.2
2,710,934 - Psyr_2333 0.17 -2.5
2,710,934 - Psyr_2333 0.17 +0.1
2,710,934 - Psyr_2333 0.17 +2.4
2,710,934 - Psyr_2333 0.17 +0.1
2,710,934 - Psyr_2333 0.17 -1.0
2,710,934 - Psyr_2333 0.17 +0.1
2,710,934 - Psyr_2333 0.17 -1.4
2,710,934 - Psyr_2333 0.17 -0.5
2,710,934 - Psyr_2333 0.17 -1.3
2,710,934 - Psyr_2333 0.17 -1.0
2,710,934 - Psyr_2333 0.17 +3.1
2,710,934 - Psyr_2333 0.17 +0.4
2,710,934 - Psyr_2333 0.17 -1.4
2,710,934 - Psyr_2333 0.17 -0.4
2,710,934 - Psyr_2333 0.17 -0.7
2,710,934 - Psyr_2333 0.17 +2.9
2,710,934 - Psyr_2333 0.17 -0.8
2,710,934 - Psyr_2333 0.17 +2.1
2,710,934 - Psyr_2333 0.17 +2.4
2,710,934 - Psyr_2333 0.17 -0.2
2,711,160 + Psyr_2333 0.45 -1.9
2,711,160 + Psyr_2333 0.45 +2.1
2,711,160 + Psyr_2333 0.45 +1.7
2,711,161 - Psyr_2333 0.45 +0.2
2,711,161 - Psyr_2333 0.45 -2.2
2,711,324 + Psyr_2333 0.66 -0.4
2,711,324 + Psyr_2333 0.66 +0.1
2,711,324 + Psyr_2333 0.66 +0.1
2,711,324 + Psyr_2333 0.66 +0.1
2,711,325 - Psyr_2333 0.66 -3.5
2,711,325 - Psyr_2333 0.66 +3.4
2,711,325 - Psyr_2333 0.66 +2.7
2,711,325 - Psyr_2333 0.66 +2.9
2,711,325 - Psyr_2333 0.66 +2.1
2,711,325 - Psyr_2333 0.66 -5.0
2,711,325 - Psyr_2333 0.66 +2.4
2,711,407 + Psyr_2333 0.76 -3.7
2,711,408 - Psyr_2333 0.76 +0.1
2,711,408 - Psyr_2333 0.76 -4.4

Or see this region's nucleotide sequence