Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2182

Experiment: KB with Mitomycin C 0.625 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_2181 and Psyr_2182 are separated by 619 nucleotidesPsyr_2182 and Psyr_2183 are separated by 177 nucleotidesPsyr_2183 and Psyr_2184 overlap by 4 nucleotides Psyr_2181: Psyr_2181 - Major facilitator superfamily, at 2,535,193 to 2,536,302 _2181 Psyr_2182: Psyr_2182 - hypothetical protein, at 2,536,922 to 2,537,275 _2182 Psyr_2183: Psyr_2183 - transcriptional regulator, GntR family, at 2,537,453 to 2,538,175 _2183 Psyr_2184: Psyr_2184 - Short-chain dehydrogenase/reductase SDR, at 2,538,172 to 2,538,960 _2184 Position (kb) 2536 2537 2538Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 2535.935 kb on + strand, within Psyr_2181at 2535.935 kb on + strand, within Psyr_2181at 2535.936 kb on - strand, within Psyr_2181at 2536.057 kb on + strand, within Psyr_2181at 2536.058 kb on - strand, within Psyr_2181at 2536.058 kb on - strand, within Psyr_2181at 2536.129 kb on + strand, within Psyr_2181at 2536.129 kb on + strand, within Psyr_2181at 2536.129 kb on + strand, within Psyr_2181at 2536.130 kb on - strand, within Psyr_2181at 2536.130 kb on - strand, within Psyr_2181at 2536.169 kb on + strand, within Psyr_2181at 2536.169 kb on + strand, within Psyr_2181at 2536.464 kb on + strandat 2536.465 kb on - strandat 2536.544 kb on - strandat 2536.601 kb on + strandat 2536.751 kb on + strandat 2536.752 kb on - strandat 2536.777 kb on + strandat 2536.778 kb on - strandat 2536.788 kb on + strandat 2536.808 kb on + strandat 2536.808 kb on + strandat 2536.809 kb on - strandat 2536.809 kb on - strandat 2536.947 kb on + strandat 2536.950 kb on + strandat 2536.975 kb on - strand, within Psyr_2182at 2537.053 kb on + strand, within Psyr_2182at 2537.054 kb on - strand, within Psyr_2182at 2537.063 kb on + strand, within Psyr_2182at 2537.063 kb on + strand, within Psyr_2182at 2537.063 kb on + strand, within Psyr_2182at 2537.063 kb on + strand, within Psyr_2182at 2537.063 kb on + strand, within Psyr_2182at 2537.063 kb on + strand, within Psyr_2182at 2537.063 kb on + strand, within Psyr_2182at 2537.063 kb on + strand, within Psyr_2182at 2537.063 kb on + strand, within Psyr_2182at 2537.063 kb on + strand, within Psyr_2182at 2537.063 kb on + strand, within Psyr_2182at 2537.063 kb on + strand, within Psyr_2182at 2537.063 kb on + strand, within Psyr_2182at 2537.063 kb on + strand, within Psyr_2182at 2537.064 kb on - strand, within Psyr_2182at 2537.064 kb on - strand, within Psyr_2182at 2537.128 kb on + strand, within Psyr_2182at 2537.129 kb on - strand, within Psyr_2182at 2537.164 kb on - strand, within Psyr_2182at 2537.164 kb on - strand, within Psyr_2182at 2537.281 kb on + strandat 2537.281 kb on + strandat 2537.281 kb on + strandat 2537.281 kb on + strandat 2537.281 kb on + strandat 2537.281 kb on + strandat 2537.282 kb on - strandat 2537.282 kb on - strandat 2537.282 kb on - strandat 2537.282 kb on - strandat 2537.285 kb on + strandat 2537.285 kb on + strandat 2537.285 kb on + strandat 2537.285 kb on + strandat 2537.285 kb on + strandat 2537.285 kb on + strandat 2537.285 kb on + strandat 2537.285 kb on + strandat 2537.286 kb on - strandat 2537.286 kb on - strandat 2537.286 kb on - strandat 2537.286 kb on - strandat 2537.286 kb on - strandat 2537.286 kb on - strandat 2537.286 kb on - strandat 2537.397 kb on - strandat 2537.397 kb on - strandat 2537.426 kb on + strandat 2537.864 kb on + strand, within Psyr_2183at 2537.864 kb on + strand, within Psyr_2183at 2537.864 kb on + strand, within Psyr_2183at 2537.865 kb on - strand, within Psyr_2183at 2537.865 kb on - strand, within Psyr_2183at 2537.865 kb on - strand, within Psyr_2183at 2537.865 kb on - strand, within Psyr_2183at 2537.900 kb on + strand, within Psyr_2183

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
remove
2,535,935 + Psyr_2181 0.67 -1.8
2,535,935 + Psyr_2181 0.67 -3.0
2,535,936 - Psyr_2181 0.67 -0.9
2,536,057 + Psyr_2181 0.78 +2.9
2,536,058 - Psyr_2181 0.78 -1.2
2,536,058 - Psyr_2181 0.78 -2.9
2,536,129 + Psyr_2181 0.84 +1.4
2,536,129 + Psyr_2181 0.84 -0.5
2,536,129 + Psyr_2181 0.84 -2.1
2,536,130 - Psyr_2181 0.84 -4.5
2,536,130 - Psyr_2181 0.84 -4.7
2,536,169 + Psyr_2181 0.88 -3.2
2,536,169 + Psyr_2181 0.88 -3.3
2,536,464 + +2.1
2,536,465 - -3.8
2,536,544 - -4.5
2,536,601 + +4.1
2,536,751 + -1.3
2,536,752 - -3.6
2,536,777 + -4.4
2,536,778 - +1.7
2,536,788 + +2.1
2,536,808 + +3.1
2,536,808 + -2.2
2,536,809 - -2.5
2,536,809 - -0.2
2,536,947 + -3.3
2,536,950 + +1.7
2,536,975 - Psyr_2182 0.15 -4.4
2,537,053 + Psyr_2182 0.37 -3.6
2,537,054 - Psyr_2182 0.37 -1.9
2,537,063 + Psyr_2182 0.40 +0.1
2,537,063 + Psyr_2182 0.40 +1.5
2,537,063 + Psyr_2182 0.40 +0.1
2,537,063 + Psyr_2182 0.40 -3.5
2,537,063 + Psyr_2182 0.40 +0.1
2,537,063 + Psyr_2182 0.40 +0.1
2,537,063 + Psyr_2182 0.40 -2.2
2,537,063 + Psyr_2182 0.40 -5.0
2,537,063 + Psyr_2182 0.40 +0.1
2,537,063 + Psyr_2182 0.40 +1.1
2,537,063 + Psyr_2182 0.40 -3.0
2,537,063 + Psyr_2182 0.40 -4.2
2,537,063 + Psyr_2182 0.40 +2.5
2,537,063 + Psyr_2182 0.40 +0.1
2,537,064 - Psyr_2182 0.40 +1.1
2,537,064 - Psyr_2182 0.40 +2.1
2,537,128 + Psyr_2182 0.58 -5.3
2,537,129 - Psyr_2182 0.58 -3.3
2,537,164 - Psyr_2182 0.68 -3.6
2,537,164 - Psyr_2182 0.68 -4.5
2,537,281 + -3.2
2,537,281 + +0.1
2,537,281 + -2.9
2,537,281 + +0.1
2,537,281 + +0.1
2,537,281 + -3.5
2,537,282 - +0.1
2,537,282 - -4.5
2,537,282 - +0.1
2,537,282 - -4.4
2,537,285 + -3.0
2,537,285 + +0.5
2,537,285 + -3.0
2,537,285 + -4.1
2,537,285 + +0.1
2,537,285 + +0.1
2,537,285 + -0.2
2,537,285 + -2.5
2,537,286 - -2.7
2,537,286 - -4.4
2,537,286 - +0.1
2,537,286 - +1.7
2,537,286 - -3.3
2,537,286 - +2.5
2,537,286 - +0.1
2,537,397 - -2.9
2,537,397 - -3.2
2,537,426 + +2.5
2,537,864 + Psyr_2183 0.57 -3.3
2,537,864 + Psyr_2183 0.57 +0.1
2,537,864 + Psyr_2183 0.57 -1.7
2,537,865 - Psyr_2183 0.57 -2.8
2,537,865 - Psyr_2183 0.57 +0.1
2,537,865 - Psyr_2183 0.57 +2.1
2,537,865 - Psyr_2183 0.57 -2.3
2,537,900 + Psyr_2183 0.62 +0.1

Or see this region's nucleotide sequence