Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1970
Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | KB with Mitomycin C 0.625 ug/ml |
---|---|---|---|---|---|
remove | |||||
2,283,501 | + | Psyr_1969 | 0.51 | +1.1 | |
2,283,502 | - | Psyr_1969 | 0.51 | +2.1 | |
2,283,502 | - | Psyr_1969 | 0.51 | -3.6 | |
2,284,131 | + | Psyr_1969 | 0.83 | +0.6 | |
2,284,275 | + | Psyr_1969 | 0.90 | +0.7 | |
2,284,275 | + | +0.1 | |||
2,284,275 | + | Psyr_1969 | 0.90 | +3.7 | |
2,284,275 | + | Psyr_1969 | 0.90 | -0.4 | |
2,284,276 | - | Psyr_1969 | 0.90 | +1.7 | |
2,284,432 | - | -0.8 | |||
2,284,538 | + | +3.5 | |||
2,284,744 | + | Psyr_1970 | 0.23 | +0.7 | |
2,284,767 | + | Psyr_1970 | 0.25 | +4.3 | |
2,284,767 | + | Psyr_1970 | 0.25 | -1.5 | |
2,284,768 | - | Psyr_1970 | 0.25 | -1.8 | |
2,284,768 | - | Psyr_1970 | 0.25 | -1.2 | |
2,284,917 | + | Psyr_1970 | 0.38 | +2.7 | |
2,284,918 | - | Psyr_1970 | 0.38 | -0.9 | |
2,285,092 | + | Psyr_1970 | 0.53 | -1.7 | |
2,285,093 | - | Psyr_1970 | 0.53 | +3.8 | |
2,285,100 | + | Psyr_1970 | 0.53 | -1.5 | |
2,285,466 | + | Psyr_1970 | 0.84 | +0.1 | |
2,285,467 | - | Psyr_1970 | 0.85 | -2.3 | |
2,285,708 | + | -0.2 | |||
2,286,230 | + | Psyr_1971 | 0.17 | -1.5 | |
2,286,230 | + | Psyr_1971 | 0.17 | -0.4 | |
2,286,519 | + | Psyr_1971 | 0.29 | +2.1 | |
2,286,519 | + | Psyr_1971 | 0.29 | +1.1 | |
2,286,519 | + | Psyr_1971 | 0.29 | +0.1 |
Or see this region's nucleotide sequence