Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1702

Experiment: KB with Mitomycin C 0.625 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1701 and Psyr_1702 are separated by 433 nucleotidesPsyr_1702 and Psyr_1703 are separated by 151 nucleotides Psyr_1701: Psyr_1701 - membrane protein, putative, at 1,909,129 to 1,911,519 _1701 Psyr_1702: Psyr_1702 - regulatory protein, LuxR, at 1,911,953 to 1,912,669 _1702 Psyr_1703: Psyr_1703 - Fatty acid desaturase, at 1,912,821 to 1,913,873 _1703 Position (kb) 1911 1912 1913Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 1911.031 kb on + strand, within Psyr_1701at 1911.146 kb on + strand, within Psyr_1701at 1911.146 kb on + strand, within Psyr_1701at 1911.147 kb on - strand, within Psyr_1701at 1911.147 kb on - strand, within Psyr_1701at 1911.147 kb on - strand, within Psyr_1701at 1911.220 kb on + strand, within Psyr_1701at 1911.221 kb on - strand, within Psyr_1701at 1911.221 kb on - strand, within Psyr_1701at 1911.221 kb on - strand, within Psyr_1701at 1911.221 kb on - strand, within Psyr_1701at 1911.221 kb on - strand, within Psyr_1701at 1911.221 kb on - strand, within Psyr_1701at 1911.227 kb on - strand, within Psyr_1701at 1911.277 kb on + strand, within Psyr_1701at 1911.278 kb on - strand, within Psyr_1701at 1911.278 kb on - strand, within Psyr_1701at 1911.280 kb on + strand, within Psyr_1701at 1911.280 kb on + strand, within Psyr_1701at 1911.280 kb on + strand, within Psyr_1701at 1911.280 kb on + strand, within Psyr_1701at 1911.688 kb on - strandat 1911.695 kb on + strandat 1911.738 kb on + strandat 1911.739 kb on - strandat 1911.762 kb on + strandat 1911.762 kb on + strandat 1911.890 kb on + strandat 1912.064 kb on + strand, within Psyr_1702at 1912.066 kb on + strand, within Psyr_1702at 1912.066 kb on + strand, within Psyr_1702at 1912.067 kb on - strand, within Psyr_1702at 1912.147 kb on + strand, within Psyr_1702at 1912.147 kb on + strand, within Psyr_1702at 1912.147 kb on + strand, within Psyr_1702at 1912.216 kb on - strand, within Psyr_1702at 1912.308 kb on - strand, within Psyr_1702at 1912.336 kb on - strand, within Psyr_1702at 1912.373 kb on - strand, within Psyr_1702at 1912.432 kb on + strand, within Psyr_1702at 1912.432 kb on + strand, within Psyr_1702at 1912.433 kb on - strand, within Psyr_1702at 1912.508 kb on + strand, within Psyr_1702at 1912.508 kb on + strand, within Psyr_1702at 1912.508 kb on + strand, within Psyr_1702at 1912.508 kb on + strand, within Psyr_1702at 1912.508 kb on + strand, within Psyr_1702at 1912.509 kb on - strand, within Psyr_1702at 1912.509 kb on - strand, within Psyr_1702at 1912.513 kb on - strand, within Psyr_1702at 1912.513 kb on - strand, within Psyr_1702at 1912.557 kb on + strand, within Psyr_1702at 1912.557 kb on + strand, within Psyr_1702at 1912.641 kb on + strandat 1912.641 kb on + strandat 1912.667 kb on + strandat 1912.851 kb on - strandat 1912.897 kb on + strandat 1912.927 kb on + strand, within Psyr_1703at 1912.928 kb on - strand, within Psyr_1703at 1912.931 kb on + strand, within Psyr_1703at 1912.932 kb on - strand, within Psyr_1703at 1912.932 kb on - strand, within Psyr_1703at 1912.932 kb on - strand, within Psyr_1703at 1912.938 kb on + strand, within Psyr_1703at 1913.012 kb on - strand, within Psyr_1703at 1913.159 kb on + strand, within Psyr_1703at 1913.187 kb on + strand, within Psyr_1703at 1913.246 kb on - strand, within Psyr_1703at 1913.275 kb on + strand, within Psyr_1703at 1913.276 kb on - strand, within Psyr_1703at 1913.276 kb on - strand, within Psyr_1703at 1913.276 kb on - strand, within Psyr_1703at 1913.293 kb on + strand, within Psyr_1703at 1913.293 kb on + strand, within Psyr_1703at 1913.294 kb on - strand, within Psyr_1703at 1913.294 kb on - strand, within Psyr_1703at 1913.307 kb on + strand, within Psyr_1703at 1913.307 kb on + strand, within Psyr_1703at 1913.387 kb on - strand, within Psyr_1703at 1913.395 kb on + strand, within Psyr_1703at 1913.403 kb on + strand, within Psyr_1703at 1913.403 kb on + strand, within Psyr_1703at 1913.404 kb on - strand, within Psyr_1703at 1913.405 kb on + strand, within Psyr_1703at 1913.406 kb on - strand, within Psyr_1703at 1913.486 kb on + strand, within Psyr_1703at 1913.488 kb on + strand, within Psyr_1703at 1913.488 kb on + strand, within Psyr_1703at 1913.488 kb on + strand, within Psyr_1703at 1913.488 kb on + strand, within Psyr_1703at 1913.489 kb on - strand, within Psyr_1703at 1913.489 kb on - strand, within Psyr_1703at 1913.561 kb on - strand, within Psyr_1703at 1913.570 kb on - strand, within Psyr_1703at 1913.644 kb on - strand, within Psyr_1703

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
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1,911,031 + Psyr_1701 0.80 -5.2
1,911,146 + Psyr_1701 0.84 +3.4
1,911,146 + Psyr_1701 0.84 -1.8
1,911,147 - Psyr_1701 0.84 +0.6
1,911,147 - Psyr_1701 0.84 +1.1
1,911,147 - Psyr_1701 0.84 -1.5
1,911,220 + Psyr_1701 0.87 -3.4
1,911,221 - Psyr_1701 0.87 -4.7
1,911,221 - Psyr_1701 0.87 +1.6
1,911,221 - Psyr_1701 0.87 -0.6
1,911,221 - Psyr_1701 0.87 -2.7
1,911,221 - Psyr_1701 0.87 +1.6
1,911,221 - Psyr_1701 0.87 -4.3
1,911,227 - Psyr_1701 0.88 -0.9
1,911,277 + Psyr_1701 0.90 +3.1
1,911,278 - Psyr_1701 0.90 -0.4
1,911,278 - Psyr_1701 0.90 +3.4
1,911,280 + Psyr_1701 0.90 -3.1
1,911,280 + Psyr_1701 0.90 +0.1
1,911,280 + Psyr_1701 0.90 -2.1
1,911,280 + Psyr_1701 0.90 -2.3
1,911,688 - -2.5
1,911,695 + -3.2
1,911,738 + -3.0
1,911,739 - +1.6
1,911,762 + -2.5
1,911,762 + +0.1
1,911,890 + -5.0
1,912,064 + Psyr_1702 0.15 -3.4
1,912,066 + Psyr_1702 0.16 +0.1
1,912,066 + Psyr_1702 0.16 +0.1
1,912,067 - Psyr_1702 0.16 +0.1
1,912,147 + Psyr_1702 0.27 -2.4
1,912,147 + Psyr_1702 0.27 -3.8
1,912,147 + Psyr_1702 0.27 -1.2
1,912,216 - Psyr_1702 0.37 +0.1
1,912,308 - Psyr_1702 0.50 -2.2
1,912,336 - Psyr_1702 0.53 +0.6
1,912,373 - Psyr_1702 0.59 -0.3
1,912,432 + Psyr_1702 0.67 -0.3
1,912,432 + Psyr_1702 0.67 +2.6
1,912,433 - Psyr_1702 0.67 -3.1
1,912,508 + Psyr_1702 0.77 +0.1
1,912,508 + Psyr_1702 0.77 -2.7
1,912,508 + Psyr_1702 0.77 -0.4
1,912,508 + Psyr_1702 0.77 +0.1
1,912,508 + Psyr_1702 0.77 -4.2
1,912,509 - Psyr_1702 0.78 -4.7
1,912,509 - Psyr_1702 0.78 +0.1
1,912,513 - Psyr_1702 0.78 -3.8
1,912,513 - Psyr_1702 0.78 -2.5
1,912,557 + Psyr_1702 0.84 -3.2
1,912,557 + Psyr_1702 0.84 -2.4
1,912,641 + -1.4
1,912,641 + -1.7
1,912,667 + -5.2
1,912,851 - +3.4
1,912,897 + +2.1
1,912,927 + Psyr_1703 0.10 -1.5
1,912,928 - Psyr_1703 0.10 +2.9
1,912,931 + Psyr_1703 0.10 -1.7
1,912,932 - Psyr_1703 0.11 +2.1
1,912,932 - Psyr_1703 0.11 -1.1
1,912,932 - Psyr_1703 0.11 +0.1
1,912,938 + Psyr_1703 0.11 -1.1
1,913,012 - Psyr_1703 0.18 +2.9
1,913,159 + Psyr_1703 0.32 +0.1
1,913,187 + Psyr_1703 0.35 -1.4
1,913,246 - Psyr_1703 0.40 -0.9
1,913,275 + Psyr_1703 0.43 -1.4
1,913,276 - Psyr_1703 0.43 -0.4
1,913,276 - Psyr_1703 0.43 -4.5
1,913,276 - Psyr_1703 0.43 -3.4
1,913,293 + Psyr_1703 0.45 +0.1
1,913,293 + Psyr_1703 0.45 +0.1
1,913,294 - Psyr_1703 0.45 +1.6
1,913,294 - Psyr_1703 0.45 -4.1
1,913,307 + Psyr_1703 0.46 +0.1
1,913,307 + Psyr_1703 0.46 +3.2
1,913,387 - Psyr_1703 0.54 +1.6
1,913,395 + Psyr_1703 0.55 +3.4
1,913,403 + Psyr_1703 0.55 -1.1
1,913,403 + Psyr_1703 0.55 -2.4
1,913,404 - Psyr_1703 0.55 -2.1
1,913,405 + Psyr_1703 0.55 -1.3
1,913,406 - Psyr_1703 0.56 -2.3
1,913,486 + Psyr_1703 0.63 +0.1
1,913,488 + Psyr_1703 0.63 -1.7
1,913,488 + Psyr_1703 0.63 -0.4
1,913,488 + Psyr_1703 0.63 +2.1
1,913,488 + Psyr_1703 0.63 -3.9
1,913,489 - Psyr_1703 0.63 -3.4
1,913,489 - Psyr_1703 0.63 -0.4
1,913,561 - Psyr_1703 0.70 +0.1
1,913,570 - Psyr_1703 0.71 +2.1
1,913,644 - Psyr_1703 0.78 -2.7

Or see this region's nucleotide sequence