Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1682

Experiment: KB with Mitomycin C 0.625 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1681 and Psyr_1682 overlap by 1 nucleotidesPsyr_1682 and Psyr_1683 overlap by 35 nucleotides Psyr_1681: Psyr_1681 - Major facilitator superfamily, at 1,888,864 to 1,890,072 _1681 Psyr_1682: Psyr_1682 - arsenite efflux membrane protein ArsB, at 1,890,072 to 1,891,352 _1682 Psyr_1683: Psyr_1683 - conserved hypothetical protein, at 1,891,318 to 1,892,301 _1683 Position (kb) 1890 1891 1892Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4 5at 1889.107 kb on + strand, within Psyr_1681at 1889.107 kb on + strand, within Psyr_1681at 1889.108 kb on - strand, within Psyr_1681at 1889.108 kb on - strand, within Psyr_1681at 1889.108 kb on - strand, within Psyr_1681at 1889.108 kb on - strand, within Psyr_1681at 1889.584 kb on + strand, within Psyr_1681at 1889.584 kb on + strand, within Psyr_1681at 1889.584 kb on + strand, within Psyr_1681at 1889.584 kb on + strand, within Psyr_1681at 1889.584 kb on + strand, within Psyr_1681at 1889.584 kb on + strand, within Psyr_1681at 1889.584 kb on + strand, within Psyr_1681at 1889.584 kb on + strand, within Psyr_1681at 1889.584 kb on + strand, within Psyr_1681at 1889.585 kb on - strand, within Psyr_1681at 1889.585 kb on - strand, within Psyr_1681at 1889.585 kb on - strand, within Psyr_1681at 1889.585 kb on - strand, within Psyr_1681at 1889.585 kb on - strand, within Psyr_1681at 1889.585 kb on - strand, within Psyr_1681at 1889.605 kb on + strand, within Psyr_1681at 1889.606 kb on - strand, within Psyr_1681at 1889.606 kb on - strand, within Psyr_1681at 1889.617 kb on + strand, within Psyr_1681at 1889.617 kb on + strand, within Psyr_1681at 1889.617 kb on + strand, within Psyr_1681at 1889.617 kb on + strand, within Psyr_1681at 1889.618 kb on - strand, within Psyr_1681at 1889.618 kb on - strand, within Psyr_1681at 1889.618 kb on - strand, within Psyr_1681at 1889.618 kb on - strand, within Psyr_1681at 1889.618 kb on - strand, within Psyr_1681at 1889.795 kb on - strand, within Psyr_1681at 1889.820 kb on - strand, within Psyr_1681at 1889.875 kb on + strand, within Psyr_1681at 1889.876 kb on - strand, within Psyr_1681at 1890.070 kb on + strandat 1890.071 kb on - strandat 1890.071 kb on - strandat 1890.071 kb on - strandat 1890.071 kb on - strandat 1890.142 kb on + strandat 1890.570 kb on + strand, within Psyr_1682at 1890.570 kb on + strand, within Psyr_1682at 1890.571 kb on - strand, within Psyr_1682at 1890.660 kb on + strand, within Psyr_1682at 1890.660 kb on + strand, within Psyr_1682at 1890.661 kb on - strand, within Psyr_1682at 1890.872 kb on + strand, within Psyr_1682at 1890.873 kb on - strand, within Psyr_1682at 1890.939 kb on + strand, within Psyr_1682at 1890.939 kb on + strand, within Psyr_1682at 1890.939 kb on + strand, within Psyr_1682at 1890.939 kb on + strand, within Psyr_1682at 1890.939 kb on + strand, within Psyr_1682at 1890.939 kb on + strand, within Psyr_1682at 1890.939 kb on + strand, within Psyr_1682at 1890.939 kb on + strand, within Psyr_1682at 1890.939 kb on + strand, within Psyr_1682at 1890.940 kb on - strand, within Psyr_1682at 1890.940 kb on - strand, within Psyr_1682at 1890.940 kb on - strand, within Psyr_1682at 1890.940 kb on - strand, within Psyr_1682at 1890.940 kb on - strandat 1891.158 kb on + strand, within Psyr_1682at 1891.159 kb on - strand, within Psyr_1682at 1891.159 kb on - strand, within Psyr_1682at 1891.159 kb on - strand, within Psyr_1682at 1891.159 kb on - strand, within Psyr_1682at 1891.159 kb on - strand, within Psyr_1682at 1891.259 kb on + strandat 1891.260 kb on - strandat 1891.260 kb on - strandat 1891.273 kb on - strandat 1891.273 kb on - strandat 1891.273 kb on - strandat 1891.275 kb on + strandat 1891.275 kb on + strandat 1891.276 kb on - strandat 1891.276 kb on - strandat 1891.456 kb on + strand, within Psyr_1683at 1891.528 kb on - strand, within Psyr_1683at 1891.528 kb on - strand, within Psyr_1683at 1891.529 kb on + strand, within Psyr_1683at 1891.529 kb on + strand, within Psyr_1683at 1891.529 kb on + strand, within Psyr_1683at 1891.529 kb on + strand, within Psyr_1683at 1891.529 kb on + strand, within Psyr_1683at 1891.529 kb on + strand, within Psyr_1683at 1891.530 kb on - strand, within Psyr_1683at 1891.530 kb on - strand, within Psyr_1683at 1891.530 kb on - strand, within Psyr_1683at 1891.530 kb on - strand, within Psyr_1683at 1891.530 kb on - strand, within Psyr_1683at 1891.530 kb on - strand, within Psyr_1683at 1891.530 kb on - strand, within Psyr_1683at 1891.621 kb on + strand, within Psyr_1683at 1891.621 kb on + strand, within Psyr_1683at 1891.889 kb on + strand, within Psyr_1683at 1892.000 kb on - strand, within Psyr_1683at 1892.293 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
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1,889,107 + Psyr_1681 0.20 +2.4
1,889,107 + Psyr_1681 0.20 +1.7
1,889,108 - Psyr_1681 0.20 -2.6
1,889,108 - Psyr_1681 0.20 +2.4
1,889,108 - Psyr_1681 0.20 -2.3
1,889,108 - Psyr_1681 0.20 +3.9
1,889,584 + Psyr_1681 0.60 +1.1
1,889,584 + Psyr_1681 0.60 +0.1
1,889,584 + Psyr_1681 0.60 +1.1
1,889,584 + Psyr_1681 0.60 +1.1
1,889,584 + Psyr_1681 0.60 +2.1
1,889,584 + Psyr_1681 0.60 +3.5
1,889,584 + Psyr_1681 0.60 +0.1
1,889,584 + Psyr_1681 0.60 -2.1
1,889,584 + Psyr_1681 0.60 -1.8
1,889,585 - Psyr_1681 0.60 +2.7
1,889,585 - Psyr_1681 0.60 -0.8
1,889,585 - Psyr_1681 0.60 +3.4
1,889,585 - Psyr_1681 0.60 +4.2
1,889,585 - Psyr_1681 0.60 +3.1
1,889,585 - Psyr_1681 0.60 +2.4
1,889,605 + Psyr_1681 0.61 +1.4
1,889,606 - Psyr_1681 0.61 +0.1
1,889,606 - Psyr_1681 0.61 -0.3
1,889,617 + Psyr_1681 0.62 +2.1
1,889,617 + Psyr_1681 0.62 -0.6
1,889,617 + Psyr_1681 0.62 +1.7
1,889,617 + Psyr_1681 0.62 -0.9
1,889,618 - Psyr_1681 0.62 +0.1
1,889,618 - Psyr_1681 0.62 +2.1
1,889,618 - Psyr_1681 0.62 -0.8
1,889,618 - Psyr_1681 0.62 +4.8
1,889,618 - Psyr_1681 0.62 +1.3
1,889,795 - Psyr_1681 0.77 -2.8
1,889,820 - Psyr_1681 0.79 -2.7
1,889,875 + Psyr_1681 0.84 -3.8
1,889,876 - Psyr_1681 0.84 +2.1
1,890,070 + +1.7
1,890,071 - +1.7
1,890,071 - -0.6
1,890,071 - +1.1
1,890,071 - +3.4
1,890,142 + -3.5
1,890,570 + Psyr_1682 0.39 -0.9
1,890,570 + Psyr_1682 0.39 +4.0
1,890,571 - Psyr_1682 0.39 -3.7
1,890,660 + Psyr_1682 0.46 -5.1
1,890,660 + Psyr_1682 0.46 +2.4
1,890,661 - Psyr_1682 0.46 +0.1
1,890,872 + Psyr_1682 0.62 +0.1
1,890,873 - Psyr_1682 0.63 +2.4
1,890,939 + Psyr_1682 0.68 +0.3
1,890,939 + Psyr_1682 0.68 -2.3
1,890,939 + Psyr_1682 0.68 +2.1
1,890,939 + Psyr_1682 0.68 -3.7
1,890,939 + Psyr_1682 0.68 -1.2
1,890,939 + Psyr_1682 0.68 +0.3
1,890,939 + Psyr_1682 0.68 -2.6
1,890,939 + Psyr_1682 0.68 -1.8
1,890,939 + Psyr_1682 0.68 -2.1
1,890,940 - Psyr_1682 0.68 -1.9
1,890,940 - Psyr_1682 0.68 -2.9
1,890,940 - Psyr_1682 0.68 -3.9
1,890,940 - Psyr_1682 0.68 +0.1
1,890,940 - +1.7
1,891,158 + Psyr_1682 0.85 -1.4
1,891,159 - Psyr_1682 0.85 -1.8
1,891,159 - Psyr_1682 0.85 +0.4
1,891,159 - Psyr_1682 0.85 +0.1
1,891,159 - Psyr_1682 0.85 +0.1
1,891,159 - Psyr_1682 0.85 +1.1
1,891,259 + -1.4
1,891,260 - +3.9
1,891,260 - +3.5
1,891,273 - -3.6
1,891,273 - +0.1
1,891,273 - -3.3
1,891,275 + +1.1
1,891,275 + +0.1
1,891,276 - -2.0
1,891,276 - +4.0
1,891,456 + Psyr_1683 0.14 -2.7
1,891,528 - Psyr_1683 0.21 +0.1
1,891,528 - Psyr_1683 0.21 +2.1
1,891,529 + Psyr_1683 0.21 +0.1
1,891,529 + Psyr_1683 0.21 +0.1
1,891,529 + Psyr_1683 0.21 -2.3
1,891,529 + Psyr_1683 0.21 +0.1
1,891,529 + Psyr_1683 0.21 +3.1
1,891,529 + Psyr_1683 0.21 -2.9
1,891,530 - Psyr_1683 0.22 +0.1
1,891,530 - Psyr_1683 0.22 +1.1
1,891,530 - Psyr_1683 0.22 -1.4
1,891,530 - Psyr_1683 0.22 -1.9
1,891,530 - Psyr_1683 0.22 +3.1
1,891,530 - Psyr_1683 0.22 -0.6
1,891,530 - Psyr_1683 0.22 -2.6
1,891,621 + Psyr_1683 0.31 -1.5
1,891,621 + Psyr_1683 0.31 -0.7
1,891,889 + Psyr_1683 0.58 -0.1
1,892,000 - Psyr_1683 0.69 -3.4
1,892,293 + +1.1

Or see this region's nucleotide sequence