Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1642

Experiment: KB with Mitomycin C 0.625 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1641 and Psyr_1642 are separated by 55 nucleotidesPsyr_1642 and Psyr_1643 are separated by 31 nucleotidesPsyr_1643 and Psyr_1644 are separated by 13 nucleotidesPsyr_1644 and Psyr_1645 are separated by 34 nucleotides Psyr_1641: Psyr_1641 - Peptidase S49, SppA, at 1,847,951 to 1,848,949 _1641 Psyr_1642: Psyr_1642 - Maf-like protein, at 1,849,005 to 1,849,658 _1642 Psyr_1643: Psyr_1643 - Protein of unknown function DUF177, at 1,849,690 to 1,850,217 _1643 Psyr_1644: Psyr_1644 - LSU ribosomal protein L32P, at 1,850,231 to 1,850,413 _1644 Psyr_1645: Psyr_1645 - phosphate:acyl-[acyl carrier protein] acyltransferase, at 1,850,448 to 1,851,440 _1645 Position (kb) 1849 1850Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1848.019 kb on + strandat 1848.019 kb on + strandat 1848.020 kb on - strandat 1848.020 kb on - strandat 1848.345 kb on - strand, within Psyr_1641at 1848.350 kb on + strand, within Psyr_1641at 1848.351 kb on - strand, within Psyr_1641at 1848.398 kb on + strand, within Psyr_1641at 1848.398 kb on + strand, within Psyr_1641at 1848.399 kb on - strand, within Psyr_1641at 1848.399 kb on - strand, within Psyr_1641at 1848.434 kb on + strand, within Psyr_1641at 1848.434 kb on + strand, within Psyr_1641at 1848.437 kb on + strand, within Psyr_1641at 1848.437 kb on + strand, within Psyr_1641at 1848.437 kb on + strand, within Psyr_1641at 1848.437 kb on + strand, within Psyr_1641at 1848.437 kb on + strand, within Psyr_1641at 1848.437 kb on + strand, within Psyr_1641at 1848.437 kb on + strand, within Psyr_1641at 1848.437 kb on + strand, within Psyr_1641at 1848.437 kb on + strand, within Psyr_1641at 1848.437 kb on + strand, within Psyr_1641at 1848.437 kb on + strand, within Psyr_1641at 1848.438 kb on - strand, within Psyr_1641at 1848.438 kb on - strand, within Psyr_1641at 1848.438 kb on - strand, within Psyr_1641at 1848.438 kb on - strand, within Psyr_1641at 1848.438 kb on - strand, within Psyr_1641at 1848.438 kb on - strand, within Psyr_1641at 1848.464 kb on + strand, within Psyr_1641at 1848.464 kb on + strand, within Psyr_1641at 1848.464 kb on + strand, within Psyr_1641at 1848.465 kb on - strand, within Psyr_1641at 1848.465 kb on - strand, within Psyr_1641at 1848.559 kb on + strand, within Psyr_1641at 1848.559 kb on + strand, within Psyr_1641at 1848.560 kb on - strand, within Psyr_1641at 1848.560 kb on - strand, within Psyr_1641at 1848.560 kb on - strand, within Psyr_1641at 1848.563 kb on + strand, within Psyr_1641at 1848.563 kb on + strand, within Psyr_1641at 1848.563 kb on + strand, within Psyr_1641at 1848.563 kb on + strand, within Psyr_1641at 1848.563 kb on + strand, within Psyr_1641at 1848.563 kb on + strand, within Psyr_1641at 1848.563 kb on + strand, within Psyr_1641at 1848.563 kb on + strand, within Psyr_1641at 1848.563 kb on + strand, within Psyr_1641at 1848.564 kb on - strand, within Psyr_1641at 1848.564 kb on - strand, within Psyr_1641at 1848.564 kb on - strand, within Psyr_1641at 1848.564 kb on - strand, within Psyr_1641at 1848.564 kb on - strand, within Psyr_1641at 1848.564 kb on - strand, within Psyr_1641at 1848.565 kb on + strand, within Psyr_1641at 1848.565 kb on + strand, within Psyr_1641at 1848.565 kb on + strand, within Psyr_1641at 1848.801 kb on - strand, within Psyr_1641at 1848.801 kb on - strand, within Psyr_1641at 1848.801 kb on - strand, within Psyr_1641at 1848.801 kb on - strand, within Psyr_1641at 1848.801 kb on - strand, within Psyr_1641at 1848.801 kb on - strand, within Psyr_1641at 1848.801 kb on - strand, within Psyr_1641at 1848.842 kb on + strand, within Psyr_1641at 1848.842 kb on + strand, within Psyr_1641at 1848.964 kb on + strandat 1848.964 kb on + strandat 1848.964 kb on + strandat 1848.964 kb on + strandat 1848.965 kb on - strandat 1848.966 kb on + strandat 1848.966 kb on + strandat 1848.966 kb on + strandat 1848.967 kb on - strandat 1848.967 kb on - strandat 1848.967 kb on - strandat 1848.967 kb on - strandat 1848.967 kb on - strandat 1848.967 kb on - strandat 1848.967 kb on - strandat 1849.029 kb on + strandat 1849.029 kb on + strandat 1849.032 kb on + strandat 1849.032 kb on + strandat 1849.032 kb on + strandat 1849.032 kb on + strandat 1849.033 kb on - strandat 1849.033 kb on - strandat 1849.033 kb on - strandat 1849.050 kb on + strandat 1849.051 kb on - strandat 1849.051 kb on - strandat 1849.150 kb on + strand, within Psyr_1642at 1849.214 kb on + strand, within Psyr_1642at 1849.214 kb on + strand, within Psyr_1642at 1849.215 kb on - strand, within Psyr_1642at 1849.215 kb on - strand, within Psyr_1642at 1849.449 kb on + strand, within Psyr_1642at 1849.450 kb on - strand, within Psyr_1642at 1849.614 kb on - strandat 1850.507 kb on + strandat 1850.508 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
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1,848,019 + +3.5
1,848,019 + -1.3
1,848,020 - -3.8
1,848,020 - -3.6
1,848,345 - Psyr_1641 0.39 -3.6
1,848,350 + Psyr_1641 0.40 +2.4
1,848,351 - Psyr_1641 0.40 -1.9
1,848,398 + Psyr_1641 0.45 +3.2
1,848,398 + Psyr_1641 0.45 -0.9
1,848,399 - Psyr_1641 0.45 +1.7
1,848,399 - Psyr_1641 0.45 +0.1
1,848,434 + Psyr_1641 0.48 -2.8
1,848,434 + Psyr_1641 0.48 -0.2
1,848,437 + Psyr_1641 0.49 -1.2
1,848,437 + Psyr_1641 0.49 +3.2
1,848,437 + Psyr_1641 0.49 +4.0
1,848,437 + Psyr_1641 0.49 +1.0
1,848,437 + Psyr_1641 0.49 -2.0
1,848,437 + Psyr_1641 0.49 +0.1
1,848,437 + Psyr_1641 0.49 +2.9
1,848,437 + Psyr_1641 0.49 -0.7
1,848,437 + Psyr_1641 0.49 +0.1
1,848,437 + Psyr_1641 0.49 +3.9
1,848,437 + Psyr_1641 0.49 +0.1
1,848,438 - Psyr_1641 0.49 -2.6
1,848,438 - Psyr_1641 0.49 +0.1
1,848,438 - Psyr_1641 0.49 -4.3
1,848,438 - Psyr_1641 0.49 -1.9
1,848,438 - Psyr_1641 0.49 -4.4
1,848,438 - Psyr_1641 0.49 +0.1
1,848,464 + Psyr_1641 0.51 +4.1
1,848,464 + Psyr_1641 0.51 +2.1
1,848,464 + Psyr_1641 0.51 +0.2
1,848,465 - Psyr_1641 0.51 -3.5
1,848,465 - Psyr_1641 0.51 -2.3
1,848,559 + Psyr_1641 0.61 -3.6
1,848,559 + Psyr_1641 0.61 +2.7
1,848,560 - Psyr_1641 0.61 +1.1
1,848,560 - Psyr_1641 0.61 +2.4
1,848,560 - Psyr_1641 0.61 -0.3
1,848,563 + Psyr_1641 0.61 -0.8
1,848,563 + Psyr_1641 0.61 -0.7
1,848,563 + Psyr_1641 0.61 +0.1
1,848,563 + Psyr_1641 0.61 +0.5
1,848,563 + Psyr_1641 0.61 +4.4
1,848,563 + Psyr_1641 0.61 -0.9
1,848,563 + Psyr_1641 0.61 +0.1
1,848,563 + Psyr_1641 0.61 -1.3
1,848,563 + Psyr_1641 0.61 +0.1
1,848,564 - Psyr_1641 0.61 +0.1
1,848,564 - Psyr_1641 0.61 +0.1
1,848,564 - Psyr_1641 0.61 +1.1
1,848,564 - Psyr_1641 0.61 +0.7
1,848,564 - Psyr_1641 0.61 +0.1
1,848,564 - Psyr_1641 0.61 +1.7
1,848,565 + Psyr_1641 0.61 -0.6
1,848,565 + Psyr_1641 0.61 +2.4
1,848,565 + Psyr_1641 0.61 +0.1
1,848,801 - Psyr_1641 0.85 +3.7
1,848,801 - Psyr_1641 0.85 -3.8
1,848,801 - Psyr_1641 0.85 -2.9
1,848,801 - Psyr_1641 0.85 -3.1
1,848,801 - Psyr_1641 0.85 +0.1
1,848,801 - Psyr_1641 0.85 -2.9
1,848,801 - Psyr_1641 0.85 +0.1
1,848,842 + Psyr_1641 0.89 +3.8
1,848,842 + Psyr_1641 0.89 +3.4
1,848,964 + +0.6
1,848,964 + +2.1
1,848,964 + +1.7
1,848,964 + +2.9
1,848,965 - -0.6
1,848,966 + +2.4
1,848,966 + +2.9
1,848,966 + +2.1
1,848,967 - +1.1
1,848,967 - -3.4
1,848,967 - -3.6
1,848,967 - -4.2
1,848,967 - +0.1
1,848,967 - +1.1
1,848,967 - -3.1
1,849,029 + +1.7
1,849,029 + -2.6
1,849,032 + +0.2
1,849,032 + +3.5
1,849,032 + +0.2
1,849,032 + -1.0
1,849,033 - +2.0
1,849,033 - -0.4
1,849,033 - +3.4
1,849,050 + +4.2
1,849,051 - -1.2
1,849,051 - +1.4
1,849,150 + Psyr_1642 0.22 -1.9
1,849,214 + Psyr_1642 0.32 -1.4
1,849,214 + Psyr_1642 0.32 +3.1
1,849,215 - Psyr_1642 0.32 +0.1
1,849,215 - Psyr_1642 0.32 +0.6
1,849,449 + Psyr_1642 0.68 +2.9
1,849,450 - Psyr_1642 0.68 +2.1
1,849,614 - +3.1
1,850,507 + +0.1
1,850,508 - +0.1

Or see this region's nucleotide sequence