Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1511

Experiment: KB with Mitomycin C 0.625 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_1510 and Psyr_1511 overlap by 4 nucleotidesPsyr_1511 and Psyr_1512 are separated by 2 nucleotidesPsyr_1512 and Psyr_1513 are separated by 38 nucleotides Psyr_1510: Psyr_1510 - prepilin, at 1,696,111 to 1,697,517 _1510 Psyr_1511: Psyr_1511 - type II secretion system protein E, at 1,697,514 to 1,698,446 _1511 Psyr_1512: Psyr_1512 - prepilin, at 1,698,449 to 1,698,973 _1512 Psyr_1513: Psyr_1513 - type II secretion system protein, at 1,699,012 to 1,700,103 _1513 Position (kb) 1697 1698 1699Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3 4 5at 1696.532 kb on + strand, within Psyr_1510at 1696.532 kb on + strand, within Psyr_1510at 1696.532 kb on + strand, within Psyr_1510at 1696.532 kb on + strand, within Psyr_1510at 1696.532 kb on + strand, within Psyr_1510at 1696.532 kb on + strand, within Psyr_1510at 1696.533 kb on - strand, within Psyr_1510at 1696.533 kb on - strand, within Psyr_1510at 1696.533 kb on - strand, within Psyr_1510at 1696.533 kb on - strand, within Psyr_1510at 1696.533 kb on - strand, within Psyr_1510at 1696.533 kb on - strand, within Psyr_1510at 1696.560 kb on - strand, within Psyr_1510at 1696.667 kb on + strand, within Psyr_1510at 1696.667 kb on + strand, within Psyr_1510at 1696.668 kb on - strand, within Psyr_1510at 1696.668 kb on - strand, within Psyr_1510at 1696.669 kb on + strand, within Psyr_1510at 1696.669 kb on + strand, within Psyr_1510at 1696.669 kb on + strand, within Psyr_1510at 1696.669 kb on + strand, within Psyr_1510at 1696.669 kb on + strand, within Psyr_1510at 1696.669 kb on + strand, within Psyr_1510at 1696.669 kb on + strand, within Psyr_1510at 1696.669 kb on + strand, within Psyr_1510at 1696.669 kb on + strand, within Psyr_1510at 1696.669 kb on + strand, within Psyr_1510at 1696.669 kb on + strand, within Psyr_1510at 1696.669 kb on + strand, within Psyr_1510at 1696.670 kb on - strand, within Psyr_1510at 1696.670 kb on - strand, within Psyr_1510at 1696.670 kb on - strand, within Psyr_1510at 1696.670 kb on - strand, within Psyr_1510at 1696.670 kb on - strand, within Psyr_1510at 1696.670 kb on - strand, within Psyr_1510at 1696.670 kb on - strand, within Psyr_1510at 1696.670 kb on - strand, within Psyr_1510at 1696.670 kb on - strand, within Psyr_1510at 1696.670 kb on - strand, within Psyr_1510at 1696.670 kb on - strand, within Psyr_1510at 1696.670 kb on - strand, within Psyr_1510at 1696.670 kb on - strand, within Psyr_1510at 1696.670 kb on - strand, within Psyr_1510at 1696.670 kb on - strand, within Psyr_1510at 1696.670 kb on - strand, within Psyr_1510at 1696.670 kb on - strand, within Psyr_1510at 1696.800 kb on + strand, within Psyr_1510at 1696.800 kb on + strand, within Psyr_1510at 1696.800 kb on + strand, within Psyr_1510at 1696.801 kb on - strand, within Psyr_1510at 1696.801 kb on - strand, within Psyr_1510at 1696.929 kb on - strand, within Psyr_1510at 1697.000 kb on + strand, within Psyr_1510at 1697.000 kb on + strand, within Psyr_1510at 1697.001 kb on - strand, within Psyr_1510at 1697.001 kb on - strand, within Psyr_1510at 1697.032 kb on + strand, within Psyr_1510at 1697.032 kb on + strand, within Psyr_1510at 1697.240 kb on + strand, within Psyr_1510at 1697.240 kb on + strand, within Psyr_1510at 1697.240 kb on + strand, within Psyr_1510at 1697.240 kb on + strand, within Psyr_1510at 1697.240 kb on + strand, within Psyr_1510at 1697.240 kb on + strand, within Psyr_1510at 1697.241 kb on - strand, within Psyr_1510at 1697.241 kb on - strand, within Psyr_1510at 1697.241 kb on - strand, within Psyr_1510at 1697.255 kb on - strand, within Psyr_1510at 1697.304 kb on - strand, within Psyr_1510at 1697.304 kb on - strand, within Psyr_1510at 1697.330 kb on + strand, within Psyr_1510at 1697.330 kb on + strand, within Psyr_1510at 1697.330 kb on + strand, within Psyr_1510at 1697.331 kb on - strand, within Psyr_1510at 1697.334 kb on + strand, within Psyr_1510at 1697.335 kb on - strand, within Psyr_1510at 1697.381 kb on + strandat 1697.382 kb on - strandat 1697.382 kb on - strandat 1697.382 kb on - strandat 1697.382 kb on - strandat 1697.382 kb on - strandat 1697.422 kb on + strandat 1697.423 kb on - strandat 1697.423 kb on - strandat 1697.682 kb on + strand, within Psyr_1511at 1697.682 kb on + strand, within Psyr_1511at 1697.683 kb on - strand, within Psyr_1511at 1697.683 kb on - strand, within Psyr_1511at 1697.683 kb on - strand, within Psyr_1511at 1697.689 kb on - strand, within Psyr_1511at 1697.689 kb on - strand, within Psyr_1511at 1698.031 kb on - strand, within Psyr_1511at 1698.031 kb on - strand, within Psyr_1511at 1698.069 kb on - strand, within Psyr_1511at 1698.120 kb on - strand, within Psyr_1511at 1698.319 kb on - strand, within Psyr_1511at 1698.384 kb on + strandat 1698.384 kb on + strandat 1698.384 kb on + strandat 1698.384 kb on + strandat 1698.384 kb on + strandat 1698.385 kb on - strandat 1698.385 kb on - strandat 1698.410 kb on - strandat 1698.419 kb on + strandat 1698.478 kb on + strandat 1698.484 kb on + strandat 1698.484 kb on + strandat 1698.547 kb on + strand, within Psyr_1512at 1698.547 kb on + strand, within Psyr_1512at 1698.681 kb on + strand, within Psyr_1512at 1698.681 kb on + strand, within Psyr_1512at 1698.681 kb on + strand, within Psyr_1512at 1698.681 kb on + strand, within Psyr_1512at 1698.682 kb on - strand, within Psyr_1512at 1698.682 kb on - strand, within Psyr_1512at 1698.682 kb on - strand, within Psyr_1512at 1698.682 kb on - strand, within Psyr_1512at 1698.706 kb on + strand, within Psyr_1512at 1698.706 kb on + strand, within Psyr_1512at 1698.707 kb on - strand, within Psyr_1512at 1698.707 kb on - strand, within Psyr_1512at 1698.722 kb on + strand, within Psyr_1512at 1698.868 kb on - strand, within Psyr_1512at 1698.868 kb on - strand, within Psyr_1512at 1698.896 kb on - strand, within Psyr_1512at 1698.928 kb on + strandat 1698.928 kb on + strandat 1698.928 kb on + strandat 1698.928 kb on + strandat 1698.929 kb on - strandat 1698.929 kb on - strandat 1698.929 kb on - strandat 1698.929 kb on - strandat 1698.929 kb on - strandat 1698.929 kb on - strandat 1698.930 kb on + strandat 1698.930 kb on + strandat 1698.931 kb on - strandat 1698.931 kb on - strandat 1698.931 kb on - strandat 1698.931 kb on - strandat 1698.931 kb on - strandat 1698.931 kb on - strandat 1698.989 kb on + strandat 1699.006 kb on + strandat 1699.007 kb on - strandat 1699.007 kb on - strandat 1699.053 kb on - strandat 1699.147 kb on + strand, within Psyr_1513at 1699.148 kb on - strand, within Psyr_1513at 1699.264 kb on + strand, within Psyr_1513at 1699.264 kb on + strand, within Psyr_1513at 1699.264 kb on + strand, within Psyr_1513at 1699.265 kb on - strand, within Psyr_1513at 1699.265 kb on - strand, within Psyr_1513at 1699.265 kb on - strand, within Psyr_1513at 1699.265 kb on - strand, within Psyr_1513at 1699.265 kb on - strand, within Psyr_1513at 1699.351 kb on + strand, within Psyr_1513at 1699.439 kb on + strand, within Psyr_1513at 1699.439 kb on + strand, within Psyr_1513at 1699.439 kb on + strandat 1699.439 kb on + strand, within Psyr_1513at 1699.440 kb on - strand, within Psyr_1513at 1699.440 kb on - strand, within Psyr_1513at 1699.440 kb on - strand, within Psyr_1513at 1699.440 kb on - strand, within Psyr_1513

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
remove
1,696,532 + Psyr_1510 0.30 +5.0
1,696,532 + Psyr_1510 0.30 -0.6
1,696,532 + Psyr_1510 0.30 +0.2
1,696,532 + Psyr_1510 0.30 +0.9
1,696,532 + Psyr_1510 0.30 -1.9
1,696,532 + Psyr_1510 0.30 +0.2
1,696,533 - Psyr_1510 0.30 -0.5
1,696,533 - Psyr_1510 0.30 +1.2
1,696,533 - Psyr_1510 0.30 +0.2
1,696,533 - Psyr_1510 0.30 +0.1
1,696,533 - Psyr_1510 0.30 -0.5
1,696,533 - Psyr_1510 0.30 -0.9
1,696,560 - Psyr_1510 0.32 -1.0
1,696,667 + Psyr_1510 0.40 -1.6
1,696,667 + Psyr_1510 0.40 +0.0
1,696,668 - Psyr_1510 0.40 +2.5
1,696,668 - Psyr_1510 0.40 +0.2
1,696,669 + Psyr_1510 0.40 -0.1
1,696,669 + Psyr_1510 0.40 +0.2
1,696,669 + Psyr_1510 0.40 +3.3
1,696,669 + Psyr_1510 0.40 -1.3
1,696,669 + Psyr_1510 0.40 -1.5
1,696,669 + Psyr_1510 0.40 -0.3
1,696,669 + Psyr_1510 0.40 -0.9
1,696,669 + Psyr_1510 0.40 -2.1
1,696,669 + Psyr_1510 0.40 +3.9
1,696,669 + Psyr_1510 0.40 +0.2
1,696,669 + Psyr_1510 0.40 -0.3
1,696,669 + Psyr_1510 0.40 -3.7
1,696,670 - Psyr_1510 0.40 -1.2
1,696,670 - Psyr_1510 0.40 +1.8
1,696,670 - Psyr_1510 0.40 +0.2
1,696,670 - Psyr_1510 0.40 +3.3
1,696,670 - Psyr_1510 0.40 +1.1
1,696,670 - Psyr_1510 0.40 -2.5
1,696,670 - Psyr_1510 0.40 -1.0
1,696,670 - Psyr_1510 0.40 +2.8
1,696,670 - Psyr_1510 0.40 -0.7
1,696,670 - Psyr_1510 0.40 +0.2
1,696,670 - Psyr_1510 0.40 +1.2
1,696,670 - Psyr_1510 0.40 -2.2
1,696,670 - Psyr_1510 0.40 -1.7
1,696,670 - Psyr_1510 0.40 -1.2
1,696,670 - Psyr_1510 0.40 -1.2
1,696,670 - Psyr_1510 0.40 +3.9
1,696,670 - Psyr_1510 0.40 +2.2
1,696,800 + Psyr_1510 0.49 +0.0
1,696,800 + Psyr_1510 0.49 +1.2
1,696,800 + Psyr_1510 0.49 -1.3
1,696,801 - Psyr_1510 0.49 +2.5
1,696,801 - Psyr_1510 0.49 +4.3
1,696,929 - Psyr_1510 0.58 -2.6
1,697,000 + Psyr_1510 0.63 +0.6
1,697,000 + Psyr_1510 0.63 -1.8
1,697,001 - Psyr_1510 0.63 -2.1
1,697,001 - Psyr_1510 0.63 -0.5
1,697,032 + Psyr_1510 0.65 -2.8
1,697,032 + Psyr_1510 0.65 +3.0
1,697,240 + Psyr_1510 0.80 -3.6
1,697,240 + Psyr_1510 0.80 +1.8
1,697,240 + Psyr_1510 0.80 +0.8
1,697,240 + Psyr_1510 0.80 -0.3
1,697,240 + Psyr_1510 0.80 +3.8
1,697,240 + Psyr_1510 0.80 -0.4
1,697,241 - Psyr_1510 0.80 -0.5
1,697,241 - Psyr_1510 0.80 -0.4
1,697,241 - Psyr_1510 0.80 -0.9
1,697,255 - Psyr_1510 0.81 +0.5
1,697,304 - Psyr_1510 0.85 -1.1
1,697,304 - Psyr_1510 0.85 -1.7
1,697,330 + Psyr_1510 0.87 +2.2
1,697,330 + Psyr_1510 0.87 -5.8
1,697,330 + Psyr_1510 0.87 +0.2
1,697,331 - Psyr_1510 0.87 -1.7
1,697,334 + Psyr_1510 0.87 +0.8
1,697,335 - Psyr_1510 0.87 +0.3
1,697,381 + -4.0
1,697,382 - -1.4
1,697,382 - -2.8
1,697,382 - +1.2
1,697,382 - -2.8
1,697,382 - -2.2
1,697,422 + +1.2
1,697,423 - -0.9
1,697,423 - +2.2
1,697,682 + Psyr_1511 0.18 +0.2
1,697,682 + Psyr_1511 0.18 +1.8
1,697,683 - Psyr_1511 0.18 +3.2
1,697,683 - Psyr_1511 0.18 -1.9
1,697,683 - Psyr_1511 0.18 +1.8
1,697,689 - Psyr_1511 0.19 +4.7
1,697,689 - Psyr_1511 0.19 +0.8
1,698,031 - Psyr_1511 0.55 +1.2
1,698,031 - Psyr_1511 0.55 -2.0
1,698,069 - Psyr_1511 0.59 -1.5
1,698,120 - Psyr_1511 0.65 -2.8
1,698,319 - Psyr_1511 0.86 +1.8
1,698,384 + -2.5
1,698,384 + +0.2
1,698,384 + -0.9
1,698,384 + +3.0
1,698,384 + +0.6
1,698,385 - -0.6
1,698,385 - +0.3
1,698,410 - +1.2
1,698,419 + +1.5
1,698,478 + -0.9
1,698,484 + +0.2
1,698,484 + -0.4
1,698,547 + Psyr_1512 0.19 +2.9
1,698,547 + Psyr_1512 0.19 +2.2
1,698,681 + Psyr_1512 0.44 -0.9
1,698,681 + Psyr_1512 0.44 +0.2
1,698,681 + Psyr_1512 0.44 -1.9
1,698,681 + Psyr_1512 0.44 +1.8
1,698,682 - Psyr_1512 0.44 -0.6
1,698,682 - Psyr_1512 0.44 +2.8
1,698,682 - Psyr_1512 0.44 -2.1
1,698,682 - Psyr_1512 0.44 -1.1
1,698,706 + Psyr_1512 0.49 -2.3
1,698,706 + Psyr_1512 0.49 +4.1
1,698,707 - Psyr_1512 0.49 +4.5
1,698,707 - Psyr_1512 0.49 -1.0
1,698,722 + Psyr_1512 0.52 -1.0
1,698,868 - Psyr_1512 0.80 +2.5
1,698,868 - Psyr_1512 0.80 +3.3
1,698,896 - Psyr_1512 0.85 +4.3
1,698,928 + -0.9
1,698,928 + +2.8
1,698,928 + +1.2
1,698,928 + -2.0
1,698,929 - -1.1
1,698,929 - -0.3
1,698,929 - +0.7
1,698,929 - +4.1
1,698,929 - -2.3
1,698,929 - -0.2
1,698,930 + +0.0
1,698,930 + +0.2
1,698,931 - -5.0
1,698,931 - +3.2
1,698,931 - +1.2
1,698,931 - -2.8
1,698,931 - -4.5
1,698,931 - -0.7
1,698,989 + +3.0
1,699,006 + +0.3
1,699,007 - -1.3
1,699,007 - +3.2
1,699,053 - -2.0
1,699,147 + Psyr_1513 0.12 -3.2
1,699,148 - Psyr_1513 0.12 -3.2
1,699,264 + Psyr_1513 0.23 +3.5
1,699,264 + Psyr_1513 0.23 +0.2
1,699,264 + Psyr_1513 0.23 -2.4
1,699,265 - Psyr_1513 0.23 +2.2
1,699,265 - Psyr_1513 0.23 +0.2
1,699,265 - Psyr_1513 0.23 +1.2
1,699,265 - Psyr_1513 0.23 -3.8
1,699,265 - Psyr_1513 0.23 +0.2
1,699,351 + Psyr_1513 0.31 +0.2
1,699,439 + Psyr_1513 0.39 +3.5
1,699,439 + Psyr_1513 0.39 -0.8
1,699,439 + +0.2
1,699,439 + Psyr_1513 0.39 -2.3
1,699,440 - Psyr_1513 0.39 +0.2
1,699,440 - Psyr_1513 0.39 +3.8
1,699,440 - Psyr_1513 0.39 -3.0
1,699,440 - Psyr_1513 0.39 +2.2

Or see this region's nucleotide sequence