Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1258

Experiment: KB with Mitomycin C 0.625 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1257 and Psyr_1258 are separated by 373 nucleotidesPsyr_1258 and Psyr_1259 are separated by 7 nucleotides Psyr_1257: Psyr_1257 - 2-isopropylmalate synthase, at 1,413,086 to 1,414,756 _1257 Psyr_1258: Psyr_1258 - Peptidase M23B, at 1,415,130 to 1,415,954 _1258 Psyr_1259: Psyr_1259 - Exodeoxyribonuclease VII large subunit, at 1,415,962 to 1,417,353 _1259 Position (kb) 1415 1416Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1414.231 kb on - strand, within Psyr_1257at 1414.269 kb on + strand, within Psyr_1257at 1414.269 kb on + strand, within Psyr_1257at 1414.270 kb on - strand, within Psyr_1257at 1414.270 kb on - strand, within Psyr_1257at 1414.368 kb on + strand, within Psyr_1257at 1414.368 kb on + strand, within Psyr_1257at 1414.368 kb on + strand, within Psyr_1257at 1414.369 kb on - strand, within Psyr_1257at 1414.369 kb on - strand, within Psyr_1257at 1414.369 kb on - strand, within Psyr_1257at 1414.369 kb on - strand, within Psyr_1257at 1414.369 kb on - strand, within Psyr_1257at 1414.448 kb on + strand, within Psyr_1257at 1414.691 kb on - strandat 1414.725 kb on + strandat 1414.726 kb on - strandat 1414.772 kb on + strandat 1414.772 kb on + strandat 1414.772 kb on + strandat 1414.773 kb on - strandat 1414.773 kb on - strandat 1414.811 kb on + strandat 1414.812 kb on - strandat 1414.815 kb on + strandat 1414.815 kb on + strandat 1414.816 kb on - strandat 1414.816 kb on - strandat 1414.816 kb on - strandat 1414.816 kb on - strandat 1415.024 kb on - strandat 1415.055 kb on - strandat 1415.131 kb on + strandat 1415.131 kb on + strandat 1415.132 kb on - strandat 1415.294 kb on + strand, within Psyr_1258at 1415.294 kb on + strand, within Psyr_1258at 1415.294 kb on + strand, within Psyr_1258at 1415.294 kb on + strand, within Psyr_1258at 1415.294 kb on + strand, within Psyr_1258at 1415.294 kb on + strand, within Psyr_1258at 1415.295 kb on - strand, within Psyr_1258at 1415.295 kb on - strand, within Psyr_1258at 1415.295 kb on - strand, within Psyr_1258at 1415.295 kb on - strand, within Psyr_1258at 1415.295 kb on - strand, within Psyr_1258at 1415.295 kb on - strand, within Psyr_1258at 1415.295 kb on - strand, within Psyr_1258at 1415.337 kb on + strand, within Psyr_1258at 1415.338 kb on - strand, within Psyr_1258at 1415.359 kb on + strand, within Psyr_1258at 1415.359 kb on + strand, within Psyr_1258at 1415.359 kb on + strand, within Psyr_1258at 1415.359 kb on + strand, within Psyr_1258at 1415.359 kb on + strand, within Psyr_1258at 1415.359 kb on + strand, within Psyr_1258at 1415.359 kb on + strand, within Psyr_1258at 1415.359 kb on + strand, within Psyr_1258at 1415.359 kb on + strand, within Psyr_1258at 1415.360 kb on - strand, within Psyr_1258at 1415.360 kb on - strand, within Psyr_1258at 1415.360 kb on - strand, within Psyr_1258at 1415.803 kb on + strand, within Psyr_1258at 1415.803 kb on + strand, within Psyr_1258at 1415.803 kb on + strand, within Psyr_1258at 1415.803 kb on + strand, within Psyr_1258at 1415.804 kb on - strand, within Psyr_1258at 1415.804 kb on - strand, within Psyr_1258at 1415.804 kb on - strand, within Psyr_1258at 1415.804 kb on - strand, within Psyr_1258at 1415.804 kb on - strand, within Psyr_1258at 1415.888 kb on + strandat 1415.888 kb on + strandat 1415.888 kb on + strandat 1415.888 kb on + strandat 1415.888 kb on + strandat 1415.889 kb on - strandat 1415.949 kb on + strandat 1415.950 kb on - strandat 1415.950 kb on - strandat 1415.950 kb on - strandat 1415.950 kb on - strandat 1416.175 kb on + strand, within Psyr_1259at 1416.175 kb on + strand, within Psyr_1259at 1416.175 kb on + strand, within Psyr_1259at 1416.176 kb on - strand, within Psyr_1259at 1416.176 kb on - strand, within Psyr_1259

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
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1,414,231 - Psyr_1257 0.69 -1.2
1,414,269 + Psyr_1257 0.71 -0.9
1,414,269 + Psyr_1257 0.71 +0.0
1,414,270 - Psyr_1257 0.71 +1.0
1,414,270 - Psyr_1257 0.71 +0.0
1,414,368 + Psyr_1257 0.77 -0.6
1,414,368 + Psyr_1257 0.77 +2.8
1,414,368 + Psyr_1257 0.77 +0.7
1,414,369 - Psyr_1257 0.77 +0.8
1,414,369 - Psyr_1257 0.77 +1.0
1,414,369 - Psyr_1257 0.77 -3.7
1,414,369 - Psyr_1257 0.77 +0.0
1,414,369 - Psyr_1257 0.77 +0.0
1,414,448 + Psyr_1257 0.82 -3.0
1,414,691 - +2.0
1,414,725 + +1.6
1,414,726 - -1.6
1,414,772 + -1.7
1,414,772 + +0.3
1,414,772 + -2.0
1,414,773 - +0.0
1,414,773 - -3.1
1,414,811 + -0.0
1,414,812 - +0.0
1,414,815 + +3.0
1,414,815 + +3.2
1,414,816 - -1.2
1,414,816 - -1.6
1,414,816 - -2.2
1,414,816 - -0.5
1,415,024 - +0.0
1,415,055 - -2.0
1,415,131 + +0.0
1,415,131 + +2.6
1,415,132 - -1.7
1,415,294 + Psyr_1258 0.20 -1.6
1,415,294 + Psyr_1258 0.20 +1.1
1,415,294 + Psyr_1258 0.20 +2.8
1,415,294 + Psyr_1258 0.20 +2.8
1,415,294 + Psyr_1258 0.20 -2.1
1,415,294 + Psyr_1258 0.20 +2.3
1,415,295 - Psyr_1258 0.20 +1.6
1,415,295 - Psyr_1258 0.20 +0.1
1,415,295 - Psyr_1258 0.20 +3.2
1,415,295 - Psyr_1258 0.20 +0.3
1,415,295 - Psyr_1258 0.20 -0.5
1,415,295 - Psyr_1258 0.20 +4.0
1,415,295 - Psyr_1258 0.20 -0.1
1,415,337 + Psyr_1258 0.25 +3.5
1,415,338 - Psyr_1258 0.25 -2.9
1,415,359 + Psyr_1258 0.28 -1.4
1,415,359 + Psyr_1258 0.28 +4.7
1,415,359 + Psyr_1258 0.28 +0.1
1,415,359 + Psyr_1258 0.28 -4.5
1,415,359 + Psyr_1258 0.28 +0.0
1,415,359 + Psyr_1258 0.28 -1.9
1,415,359 + Psyr_1258 0.28 +2.0
1,415,359 + Psyr_1258 0.28 +0.6
1,415,359 + Psyr_1258 0.28 -1.5
1,415,360 - Psyr_1258 0.28 +1.1
1,415,360 - Psyr_1258 0.28 +1.0
1,415,360 - Psyr_1258 0.28 +1.0
1,415,803 + Psyr_1258 0.82 -3.6
1,415,803 + Psyr_1258 0.82 +4.2
1,415,803 + Psyr_1258 0.82 -0.3
1,415,803 + Psyr_1258 0.82 +2.6
1,415,804 - Psyr_1258 0.82 +0.4
1,415,804 - Psyr_1258 0.82 +1.6
1,415,804 - Psyr_1258 0.82 +2.0
1,415,804 - Psyr_1258 0.82 +3.5
1,415,804 - Psyr_1258 0.82 +2.0
1,415,888 + +2.6
1,415,888 + -4.4
1,415,888 + +3.7
1,415,888 + -0.2
1,415,888 + -1.9
1,415,889 - +0.0
1,415,949 + +0.3
1,415,950 - +0.6
1,415,950 - -1.1
1,415,950 - +4.5
1,415,950 - -3.9
1,416,175 + Psyr_1259 0.15 +2.6
1,416,175 + Psyr_1259 0.15 +2.7
1,416,175 + Psyr_1259 0.15 +2.3
1,416,176 - Psyr_1259 0.15 -4.1
1,416,176 - Psyr_1259 0.15 -3.0

Or see this region's nucleotide sequence