Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1216 and Psyr_1217 are separated by 166 nucleotides Psyr_1217 and Psyr_1218 are separated by 64 nucleotides
Psyr_1216: Psyr_1216 - type III secretion outer membrane protein PopN, at 1,373,498 to 1,374,679
_1216
Psyr_1217: Psyr_1217 - Sigma-70 region 2:Sigma-70 region 4, at 1,374,846 to 1,375,400
_1217
Psyr_1218: Psyr_1218 - type III helper protein HrpK1, at 1,375,465 to 1,377,777
_1218
Position (kb) 1374
1375
1376 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 1374.040 kb on - strand, within Psyr_1216 at 1374.051 kb on - strand, within Psyr_1216 at 1374.151 kb on + strand, within Psyr_1216 at 1374.152 kb on - strand, within Psyr_1216 at 1374.152 kb on - strand, within Psyr_1216 at 1374.170 kb on + strand, within Psyr_1216 at 1374.171 kb on - strand, within Psyr_1216 at 1374.171 kb on - strand, within Psyr_1216 at 1374.174 kb on + strand, within Psyr_1216 at 1374.174 kb on + strand, within Psyr_1216 at 1374.174 kb on + strand, within Psyr_1216 at 1374.174 kb on + strand, within Psyr_1216 at 1374.174 kb on + strand, within Psyr_1216 at 1374.174 kb on + strand, within Psyr_1216 at 1374.174 kb on + strand, within Psyr_1216 at 1374.174 kb on + strand, within Psyr_1216 at 1374.175 kb on - strand, within Psyr_1216 at 1374.175 kb on - strand, within Psyr_1216 at 1374.175 kb on - strand, within Psyr_1216 at 1374.175 kb on - strand, within Psyr_1216 at 1374.175 kb on - strand, within Psyr_1216 at 1374.175 kb on - strand, within Psyr_1216 at 1374.175 kb on - strand, within Psyr_1216 at 1374.208 kb on + strand, within Psyr_1216 at 1374.208 kb on + strand, within Psyr_1216 at 1374.209 kb on - strand, within Psyr_1216 at 1374.209 kb on - strand, within Psyr_1216 at 1374.209 kb on - strand, within Psyr_1216 at 1374.366 kb on + strand, within Psyr_1216 at 1374.367 kb on - strand, within Psyr_1216 at 1374.583 kb on + strand at 1374.583 kb on + strand at 1374.584 kb on - strand at 1374.584 kb on - strand at 1374.584 kb on - strand at 1374.605 kb on - strand at 1374.706 kb on - strand at 1374.814 kb on - strand at 1375.070 kb on - strand, within Psyr_1217 at 1375.070 kb on - strand, within Psyr_1217 at 1375.195 kb on + strand, within Psyr_1217 at 1375.195 kb on + strand, within Psyr_1217 at 1375.195 kb on + strand, within Psyr_1217 at 1375.196 kb on - strand, within Psyr_1217 at 1375.196 kb on - strand, within Psyr_1217 at 1375.196 kb on - strand, within Psyr_1217 at 1375.226 kb on - strand, within Psyr_1217 at 1375.384 kb on + strand at 1375.384 kb on + strand at 1375.384 kb on + strand at 1375.384 kb on + strand at 1375.384 kb on + strand at 1375.384 kb on + strand at 1375.384 kb on + strand at 1375.384 kb on + strand at 1375.385 kb on - strand at 1375.385 kb on - strand at 1375.385 kb on - strand at 1375.385 kb on - strand at 1375.385 kb on - strand at 1375.385 kb on - strand at 1375.385 kb on - strand at 1375.385 kb on - strand at 1375.385 kb on - strand at 1375.385 kb on - strand at 1375.385 kb on - strand at 1375.385 kb on - strand at 1375.385 kb on - strand at 1375.410 kb on + strand at 1375.410 kb on + strand at 1375.410 kb on + strand at 1375.410 kb on + strand at 1375.410 kb on + strand at 1375.410 kb on + strand at 1375.411 kb on - strand at 1375.411 kb on - strand at 1375.411 kb on - strand at 1375.411 kb on - strand at 1375.431 kb on + strand at 1375.431 kb on + strand at 1375.479 kb on + strand at 1375.479 kb on + strand at 1375.479 kb on + strand at 1375.479 kb on + strand at 1375.479 kb on + strand at 1375.479 kb on + strand at 1375.479 kb on + strand at 1375.479 kb on + strand at 1375.479 kb on + strand at 1375.479 kb on + strand at 1375.479 kb on + strand at 1375.479 kb on + strand at 1375.479 kb on + strand at 1375.479 kb on + strand at 1375.479 kb on + strand at 1375.479 kb on + strand at 1375.479 kb on + strand at 1375.479 kb on + strand at 1375.479 kb on + strand at 1375.479 kb on + strand at 1375.479 kb on + strand at 1375.479 kb on + strand at 1375.479 kb on + strand at 1375.480 kb on - strand at 1375.480 kb on - strand at 1375.480 kb on - strand at 1375.480 kb on - strand at 1375.480 kb on - strand at 1375.480 kb on - strand at 1375.480 kb on - strand at 1375.480 kb on - strand at 1375.480 kb on - strand at 1375.480 kb on - strand at 1375.480 kb on - strand at 1375.480 kb on - strand at 1375.480 kb on - strand at 1375.480 kb on - strand at 1375.480 kb on - strand at 1375.480 kb on - strand at 1375.480 kb on - strand at 1375.480 kb on - strand at 1375.480 kb on - strand at 1375.481 kb on + strand at 1375.481 kb on + strand at 1375.704 kb on + strand, within Psyr_1218 at 1375.704 kb on + strand, within Psyr_1218 at 1375.853 kb on - strand, within Psyr_1218 at 1375.853 kb on - strand, within Psyr_1218 at 1376.155 kb on + strand, within Psyr_1218 at 1376.155 kb on + strand, within Psyr_1218 at 1376.155 kb on + strand, within Psyr_1218 at 1376.155 kb on + strand, within Psyr_1218 at 1376.155 kb on + strand, within Psyr_1218 at 1376.155 kb on + strand, within Psyr_1218 at 1376.155 kb on + strand, within Psyr_1218 at 1376.156 kb on - strand, within Psyr_1218 at 1376.156 kb on - strand, within Psyr_1218 at 1376.156 kb on - strand, within Psyr_1218 at 1376.156 kb on - strand, within Psyr_1218 at 1376.156 kb on - strand, within Psyr_1218 at 1376.156 kb on - strand, within Psyr_1218 at 1376.229 kb on + strand, within Psyr_1218 at 1376.229 kb on + strand, within Psyr_1218 at 1376.229 kb on + strand, within Psyr_1218 at 1376.230 kb on - strand, within Psyr_1218 at 1376.230 kb on - strand, within Psyr_1218 at 1376.230 kb on - strand, within Psyr_1218 at 1376.331 kb on + strand, within Psyr_1218 at 1376.332 kb on - strand, within Psyr_1218 at 1376.355 kb on + strand, within Psyr_1218 at 1376.356 kb on - strand, within Psyr_1218 at 1376.356 kb on - strand, within Psyr_1218
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 1,374,040 - Psyr_1216 0.46 -1.2 1,374,051 - Psyr_1216 0.47 -0.2 1,374,151 + Psyr_1216 0.55 -3.4 1,374,152 - Psyr_1216 0.55 -1.4 1,374,152 - Psyr_1216 0.55 +2.6 1,374,170 + Psyr_1216 0.57 +0.0 1,374,171 - Psyr_1216 0.57 -1.9 1,374,171 - Psyr_1216 0.57 -4.1 1,374,174 + Psyr_1216 0.57 +1.8 1,374,174 + Psyr_1216 0.57 -2.2 1,374,174 + Psyr_1216 0.57 -3.3 1,374,174 + Psyr_1216 0.57 +3.9 1,374,174 + Psyr_1216 0.57 +3.3 1,374,174 + Psyr_1216 0.57 +2.8 1,374,174 + Psyr_1216 0.57 +2.0 1,374,174 + Psyr_1216 0.57 -4.0 1,374,175 - Psyr_1216 0.57 -2.8 1,374,175 - Psyr_1216 0.57 -2.1 1,374,175 - Psyr_1216 0.57 +0.0 1,374,175 - Psyr_1216 0.57 +3.2 1,374,175 - Psyr_1216 0.57 -2.4 1,374,175 - Psyr_1216 0.57 -0.9 1,374,175 - Psyr_1216 0.57 -0.5 1,374,208 + Psyr_1216 0.60 +0.5 1,374,208 + Psyr_1216 0.60 -1.3 1,374,209 - Psyr_1216 0.60 -3.8 1,374,209 - Psyr_1216 0.60 +2.3 1,374,209 - Psyr_1216 0.60 -2.6 1,374,366 + Psyr_1216 0.73 -2.4 1,374,367 - Psyr_1216 0.74 +0.0 1,374,583 + -2.0 1,374,583 + +0.0 1,374,584 - -2.4 1,374,584 - -0.8 1,374,584 - -1.8 1,374,605 - -0.3 1,374,706 - +0.0 1,374,814 - +1.0 1,375,070 - Psyr_1217 0.40 -4.0 1,375,070 - Psyr_1217 0.40 +3.3 1,375,195 + Psyr_1217 0.63 -0.5 1,375,195 + Psyr_1217 0.63 +0.5 1,375,195 + Psyr_1217 0.63 +3.0 1,375,196 - Psyr_1217 0.63 +1.6 1,375,196 - Psyr_1217 0.63 +0.0 1,375,196 - Psyr_1217 0.63 +2.0 1,375,226 - Psyr_1217 0.68 +1.0 1,375,384 + +1.8 1,375,384 + +0.7 1,375,384 + +2.6 1,375,384 + -1.6 1,375,384 + -0.5 1,375,384 + +2.0 1,375,384 + -0.4 1,375,384 + +1.6 1,375,385 - +1.0 1,375,385 - -1.4 1,375,385 - +2.3 1,375,385 - +0.2 1,375,385 - -3.2 1,375,385 - -0.8 1,375,385 - +0.0 1,375,385 - -2.4 1,375,385 - -3.0 1,375,385 - -1.9 1,375,385 - -0.9 1,375,385 - -1.1 1,375,385 - -1.2 1,375,410 + +0.9 1,375,410 + -0.5 1,375,410 + -0.2 1,375,410 + -1.4 1,375,410 + +2.3 1,375,410 + +0.5 1,375,411 - +3.2 1,375,411 - +1.0 1,375,411 - -3.2 1,375,411 - +2.0 1,375,431 + -2.0 1,375,431 + -0.9 1,375,479 + +2.6 1,375,479 + -0.6 1,375,479 + -2.3 1,375,479 + -2.0 1,375,479 + -3.8 1,375,479 + +0.0 1,375,479 + +3.0 1,375,479 + -3.7 1,375,479 + -2.7 1,375,479 + -1.2 1,375,479 + +0.2 1,375,479 + +1.3 1,375,479 + +2.6 1,375,479 + -2.7 1,375,479 + -2.9 1,375,479 + -3.9 1,375,479 + +1.0 1,375,479 + -1.8 1,375,479 + -0.6 1,375,479 + +2.0 1,375,479 + +3.3 1,375,479 + -1.5 1,375,479 + -4.1 1,375,480 - +4.0 1,375,480 - -1.5 1,375,480 - +3.8 1,375,480 - -1.4 1,375,480 - +4.3 1,375,480 - -2.2 1,375,480 - -1.8 1,375,480 - +0.7 1,375,480 - +3.3 1,375,480 - +1.2 1,375,480 - -3.8 1,375,480 - -1.5 1,375,480 - -3.3 1,375,480 - +3.9 1,375,480 - -0.6 1,375,480 - +1.6 1,375,480 - -0.8 1,375,480 - +2.0 1,375,480 - +0.1 1,375,481 + -1.8 1,375,481 + -0.6 1,375,704 + Psyr_1218 0.10 +0.0 1,375,704 + Psyr_1218 0.10 -2.3 1,375,853 - Psyr_1218 0.17 -2.0 1,375,853 - Psyr_1218 0.17 +1.0 1,376,155 + Psyr_1218 0.30 +1.9 1,376,155 + Psyr_1218 0.30 -1.3 1,376,155 + Psyr_1218 0.30 -0.6 1,376,155 + Psyr_1218 0.30 +2.0 1,376,155 + Psyr_1218 0.30 +3.0 1,376,155 + Psyr_1218 0.30 +5.1 1,376,155 + Psyr_1218 0.30 +0.2 1,376,156 - Psyr_1218 0.30 +0.0 1,376,156 - Psyr_1218 0.30 +3.8 1,376,156 - Psyr_1218 0.30 -2.0 1,376,156 - Psyr_1218 0.30 +0.1 1,376,156 - Psyr_1218 0.30 +0.2 1,376,156 - Psyr_1218 0.30 -1.1 1,376,229 + Psyr_1218 0.33 +3.0 1,376,229 + Psyr_1218 0.33 -1.7 1,376,229 + Psyr_1218 0.33 -0.6 1,376,230 - Psyr_1218 0.33 +4.5 1,376,230 - Psyr_1218 0.33 -1.7 1,376,230 - Psyr_1218 0.33 -1.3 1,376,331 + Psyr_1218 0.37 +1.6 1,376,332 - Psyr_1218 0.37 -2.3 1,376,355 + Psyr_1218 0.38 +3.6 1,376,356 - Psyr_1218 0.39 -0.5 1,376,356 - Psyr_1218 0.39 -2.4
Or see this region's nucleotide sequence