Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1180

Experiment: KB with Mitomycin C 0.625 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Mitomycin C 0.625 ug/ml
1,333,448	+		Psyr_1179	0.67	-4.1
1,333,449	-		Psyr_1179	0.67	+2.0
1,333,449	-		Psyr_1179	0.67	-0.5
1,333,539	+		Psyr_1179	0.72	+0.0
1,333,539	+		Psyr_1179	0.72	-1.3
1,333,539	+		Psyr_1179	0.72	-0.1
1,333,539	+		Psyr_1179	0.72	-3.1
1,333,540	-		Psyr_1179	0.72	+2.3
1,333,540	-		Psyr_1179	0.72	-0.7
1,333,540	-		Psyr_1179	0.72	+4.2
1,333,540	-		Psyr_1179	0.72	-4.4
1,333,540	-		Psyr_1179	0.72	-4.5
1,333,540	-		Psyr_1179	0.72	-1.0
1,333,620	+		Psyr_1179	0.77	-2.4
1,333,620	+		Psyr_1179	0.77	-2.3
1,333,708	+		Psyr_1179	0.82	-3.2
1,333,708	+		Psyr_1179	0.82	+4.1
1,333,708	+		Psyr_1179	0.82	+0.1
1,333,709	-		Psyr_1179	0.82	-1.0
1,333,709	-		Psyr_1179	0.82	+2.3
1,333,709	-		Psyr_1179	0.82	-4.3
1,333,709	-		Psyr_1179	0.82	-1.9
1,333,710	+		Psyr_1179	0.82	-3.2
1,333,711	-		Psyr_1179	0.82	+1.0
1,333,909	-				+2.3
1,333,965	-				+2.3
1,334,057	+				+3.2
1,334,057	+				-2.0
1,334,057	+				-1.5
1,334,057	+				+0.2
1,334,057	+				+1.6
1,334,057	+				-2.7
1,334,057	+				+1.6
1,334,058	-				-2.9
1,334,058	-				-1.4
1,334,058	-				-2.5
1,334,058	-				+1.6
1,334,060	-				-1.6
1,334,060	-				-0.8
1,334,060	-				+3.0
1,334,091	-				+1.6
1,334,091	-				+1.6
1,334,109	+				-0.8
1,334,109	+				-1.1
1,334,185	+				+2.0
1,334,186	-				+0.0
1,334,186	-				-2.1
1,334,229	+				-0.6
1,334,229	+				+2.3
1,334,230	-				-3.3
1,334,230	-				+0.0
1,334,230	-				-4.0
1,334,230	-				-3.7
1,334,249	-				+0.0
1,334,249	-				+0.0
1,334,371	+		Psyr_1180	0.29	+1.5
1,334,371	+		Psyr_1180	0.29	+1.0
1,334,372	-		Psyr_1180	0.30	-3.0
1,334,372	-		Psyr_1180	0.30	+0.0
1,334,372	-		Psyr_1180	0.30	-2.6
1,334,372	-		Psyr_1180	0.30	+0.0
1,334,372	-		Psyr_1180	0.30	+0.0
1,334,391	+		Psyr_1180	0.34	+0.0
1,334,392	-		Psyr_1180	0.34	-2.3
1,334,392	-		Psyr_1180	0.34	-2.3
1,334,407	+		Psyr_1180	0.37	-3.6
1,334,408	-		Psyr_1180	0.37	-2.6
1,334,408	-		Psyr_1180	0.37	-2.0
1,334,408	-		Psyr_1180	0.37	-2.8
1,334,408	-		Psyr_1180	0.37	-2.1
1,334,458	+		Psyr_1180	0.47	-1.4
1,334,458	+		Psyr_1180	0.47	-1.0
1,334,556	+		Psyr_1180	0.67	+2.0
1,334,556	+		Psyr_1180	0.67	-2.8
1,334,556	+		Psyr_1180	0.67	-2.8
1,334,556	+		Psyr_1180	0.67	-2.2
1,334,557	-		Psyr_1180	0.68	-2.3
1,334,557	-		Psyr_1180	0.68	-2.6
1,334,666	-				-3.6
1,334,738	-				+2.6
1,334,762	+				-1.1
1,334,762	+				+0.0
1,334,762	+				+0.0
1,334,762	+				-4.3
1,334,762	+				-0.7
1,334,763	-				-1.5
1,334,763	-				+2.3
1,334,763	-				+0.0
1,334,763	-				+1.6
1,334,873	+		Psyr_1181	0.30	-1.3
1,334,949	+		Psyr_1181	0.56	-1.5
1,334,950	-		Psyr_1181	0.56	-2.6
1,334,950	-		Psyr_1181	0.56	-1.4
1,335,011	+		Psyr_1181	0.77	-2.9
1,335,011	+		Psyr_1181	0.77	+3.3
1,335,011	+		Psyr_1181	0.77	+2.0
1,335,011	+		Psyr_1181	0.77	-3.7
1,335,011	+		Psyr_1181	0.77	+2.0
1,335,011	+		Psyr_1181	0.77	+2.3
1,335,011	+		Psyr_1181	0.77	+0.0
1,335,011	+		Psyr_1181	0.77	-2.2
1,335,012	-		Psyr_1181	0.78	-2.1
1,335,012	-		Psyr_1181	0.78	-2.0
1,335,012	-		Psyr_1181	0.78	-1.5
1,335,012	-		Psyr_1181	0.78	-0.2
1,335,012	-		Psyr_1181	0.78	+0.0
1,335,012	-		Psyr_1181	0.78	+3.3
1,335,012	-		Psyr_1181	0.78	+1.5
1,335,012	-		Psyr_1181	0.78	-2.5
1,335,012	-		Psyr_1181	0.78	+0.0
1,335,055	+				+0.6
1,335,075	+				-2.4
1,335,075	+				+2.6
1,335,075	+				-1.8
1,335,075	+				-0.4
1,335,075	+				+0.0
1,335,075	+				+0.0
1,335,075	+				-0.1
1,335,075	+				+0.0
1,335,075	+				-0.7
1,335,075	+				-1.9
1,335,075	+				+3.2
1,335,075	+				+2.6
1,335,075	+				+5.3
1,335,075	+				-0.9
1,335,075	+				-0.4
1,335,075	+				+2.3
1,335,075	+				-0.5
1,335,075	+				+4.0
1,335,075	+				+0.0
1,335,075	+				-1.2
1,335,076	-				+0.0
1,335,076	-				-1.6
1,335,076	-				-4.9
1,335,076	-				+3.2
1,335,076	-				+2.8
1,335,076	-				+0.6
1,335,076	-				+1.0
1,335,076	-				+1.6
1,335,076	-				+0.0
1,335,076	-				-0.8
1,335,076	-				-0.3
1,335,076	-				+2.0
1,335,076	-				-3.7
1,335,076	-				-0.7
1,335,076	-				-3.6
1,335,076	-				+0.0
1,335,076	-				-2.7
1,335,076	-				-4.4
1,335,076	-				-2.1
1,335,101	+				-1.5
1,335,101	+				+1.9
1,335,101	+				-1.6
1,335,101	+				-0.8
1,335,101	+				+1.5
1,335,101	+				-1.7
1,335,101	+				+0.6
1,335,101	+				+0.0
1,335,101	+				+0.0
1,335,101	+				-0.3
1,335,101	+				-1.1
1,335,102	-				-2.3
1,335,102	-				+1.6
1,335,102	-				+0.0
1,335,118	+				-1.1
1,335,119	-				+2.6
1,335,178	+				+0.4
1,335,178	+				+0.0
1,335,179	-				+1.0
1,335,362	+				-1.0
1,335,362	+				+1.0
1,335,363	-				-5.6
1,335,363	-				+0.6
1,335,400	+				+4.1
1,335,400	+				+4.3
1,335,400	+				-4.2
1,335,400	+				-0.9
1,335,400	+				+0.0
1,335,401	-				+3.9
1,335,401	-				+0.1
1,335,401	-				-0.2
1,335,431	+				-1.0
1,335,431	+				+1.0
1,335,431	+				-0.7
1,335,431	+				+2.3
1,335,432	-				-0.7
1,335,432	-				-1.6
1,335,434	-				-2.2
1,335,434	-				-1.0
1,335,447	-				+0.5
1,335,450	+				+3.0
1,335,451	-				+2.3
1,335,451	-				+3.2