Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1170

Experiment: KB with Mitomycin C 0.625 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1169 and Psyr_1170 are separated by 14 nucleotidesPsyr_1170 and Psyr_1171 are separated by 211 nucleotidesPsyr_1171 and Psyr_1172 are separated by 61 nucleotides Psyr_1169: Psyr_1169 - nucleoside-binding protein, at 1,322,719 to 1,323,828 _1169 Psyr_1170: Psyr_1170 - Amidase, at 1,323,843 to 1,325,663 _1170 Psyr_1171: Psyr_1171 - conserved hypothetical protein, at 1,325,875 to 1,326,255 _1171 Psyr_1172: Psyr_1172 - transcriptional regulator, AsnC family, at 1,326,317 to 1,326,796 _1172 Position (kb) 1323 1324 1325 1326Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 1322.925 kb on - strand, within Psyr_1169at 1323.053 kb on + strand, within Psyr_1169at 1323.163 kb on + strand, within Psyr_1169at 1323.163 kb on + strand, within Psyr_1169at 1323.163 kb on + strand, within Psyr_1169at 1323.163 kb on + strand, within Psyr_1169at 1323.164 kb on - strand, within Psyr_1169at 1323.164 kb on - strand, within Psyr_1169at 1323.164 kb on - strand, within Psyr_1169at 1323.386 kb on + strand, within Psyr_1169at 1323.386 kb on + strand, within Psyr_1169at 1323.387 kb on - strand, within Psyr_1169at 1323.404 kb on + strand, within Psyr_1169at 1323.404 kb on + strand, within Psyr_1169at 1323.521 kb on + strand, within Psyr_1169at 1323.710 kb on + strand, within Psyr_1169at 1323.710 kb on + strand, within Psyr_1169at 1323.710 kb on + strand, within Psyr_1169at 1323.711 kb on - strand, within Psyr_1169at 1323.711 kb on - strand, within Psyr_1169at 1323.714 kb on + strand, within Psyr_1169at 1323.714 kb on + strand, within Psyr_1169at 1323.714 kb on + strand, within Psyr_1169at 1323.714 kb on + strand, within Psyr_1169at 1323.714 kb on + strand, within Psyr_1169at 1323.714 kb on + strand, within Psyr_1169at 1323.715 kb on - strand, within Psyr_1169at 1323.715 kb on - strand, within Psyr_1169at 1323.715 kb on - strand, within Psyr_1169at 1323.747 kb on - strandat 1323.898 kb on + strandat 1324.056 kb on + strand, within Psyr_1170at 1324.056 kb on + strand, within Psyr_1170at 1324.056 kb on + strand, within Psyr_1170at 1324.057 kb on - strand, within Psyr_1170at 1324.057 kb on - strand, within Psyr_1170at 1324.057 kb on - strand, within Psyr_1170at 1324.129 kb on + strandat 1324.130 kb on - strand, within Psyr_1170at 1324.130 kb on - strand, within Psyr_1170at 1324.256 kb on + strand, within Psyr_1170at 1324.256 kb on + strand, within Psyr_1170at 1324.257 kb on - strand, within Psyr_1170at 1324.258 kb on + strand, within Psyr_1170at 1324.259 kb on - strand, within Psyr_1170at 1324.456 kb on + strand, within Psyr_1170at 1324.456 kb on + strand, within Psyr_1170at 1324.456 kb on + strand, within Psyr_1170at 1324.457 kb on - strand, within Psyr_1170at 1324.457 kb on - strand, within Psyr_1170at 1324.457 kb on - strand, within Psyr_1170at 1324.457 kb on - strand, within Psyr_1170at 1324.738 kb on + strand, within Psyr_1170at 1324.739 kb on - strand, within Psyr_1170at 1324.832 kb on - strand, within Psyr_1170at 1324.951 kb on + strand, within Psyr_1170at 1324.952 kb on - strand, within Psyr_1170at 1325.204 kb on - strand, within Psyr_1170at 1325.204 kb on - strand, within Psyr_1170at 1325.237 kb on - strand, within Psyr_1170at 1325.350 kb on - strand, within Psyr_1170at 1325.353 kb on + strand, within Psyr_1170at 1325.354 kb on - strand, within Psyr_1170at 1325.354 kb on - strand, within Psyr_1170at 1325.450 kb on - strand, within Psyr_1170at 1325.561 kb on + strandat 1325.561 kb on + strandat 1325.562 kb on - strandat 1325.562 kb on - strandat 1325.636 kb on + strandat 1325.669 kb on + strandat 1325.669 kb on + strandat 1325.669 kb on + strandat 1325.669 kb on + strandat 1325.669 kb on + strandat 1325.669 kb on + strandat 1325.669 kb on + strandat 1325.669 kb on + strandat 1325.670 kb on - strandat 1325.670 kb on - strandat 1325.670 kb on - strandat 1325.670 kb on - strandat 1325.671 kb on + strandat 1325.671 kb on + strandat 1325.671 kb on + strandat 1325.672 kb on - strandat 1325.672 kb on - strandat 1325.729 kb on - strandat 1325.740 kb on - strandat 1325.746 kb on + strandat 1325.839 kb on + strandat 1325.840 kb on - strandat 1325.843 kb on - strandat 1325.926 kb on + strand, within Psyr_1171at 1325.927 kb on - strand, within Psyr_1171at 1325.927 kb on - strand, within Psyr_1171at 1325.927 kb on - strand, within Psyr_1171at 1325.972 kb on + strand, within Psyr_1171at 1325.973 kb on - strand, within Psyr_1171at 1326.100 kb on + strand, within Psyr_1171at 1326.100 kb on + strand, within Psyr_1171at 1326.100 kb on + strand, within Psyr_1171at 1326.100 kb on + strand, within Psyr_1171at 1326.101 kb on - strand, within Psyr_1171at 1326.101 kb on - strand, within Psyr_1171at 1326.104 kb on + strand, within Psyr_1171at 1326.104 kb on + strand, within Psyr_1171at 1326.104 kb on + strand, within Psyr_1171at 1326.104 kb on + strand, within Psyr_1171at 1326.104 kb on + strandat 1326.104 kb on + strand, within Psyr_1171at 1326.105 kb on - strand, within Psyr_1171at 1326.105 kb on - strand, within Psyr_1171at 1326.105 kb on - strand, within Psyr_1171at 1326.105 kb on - strand, within Psyr_1171at 1326.105 kb on - strand, within Psyr_1171at 1326.105 kb on - strand, within Psyr_1171at 1326.105 kb on - strand, within Psyr_1171at 1326.105 kb on - strand, within Psyr_1171at 1326.105 kb on - strand, within Psyr_1171at 1326.167 kb on + strand, within Psyr_1171at 1326.167 kb on + strand, within Psyr_1171at 1326.167 kb on + strand, within Psyr_1171at 1326.167 kb on + strand, within Psyr_1171at 1326.167 kb on + strand, within Psyr_1171at 1326.167 kb on + strand, within Psyr_1171at 1326.167 kb on + strand, within Psyr_1171at 1326.167 kb on + strand, within Psyr_1171at 1326.167 kb on + strand, within Psyr_1171at 1326.167 kb on + strand, within Psyr_1171at 1326.167 kb on + strand, within Psyr_1171at 1326.168 kb on - strand, within Psyr_1171at 1326.168 kb on - strand, within Psyr_1171at 1326.168 kb on - strand, within Psyr_1171at 1326.168 kb on - strand, within Psyr_1171at 1326.168 kb on - strand, within Psyr_1171at 1326.168 kb on - strand, within Psyr_1171at 1326.168 kb on - strand, within Psyr_1171at 1326.168 kb on - strand, within Psyr_1171at 1326.168 kb on - strand, within Psyr_1171at 1326.260 kb on - strandat 1326.267 kb on + strandat 1326.267 kb on + strandat 1326.268 kb on - strandat 1326.268 kb on - strandat 1326.313 kb on + strandat 1326.313 kb on + strandat 1326.313 kb on + strandat 1326.314 kb on - strandat 1326.314 kb on - strandat 1326.314 kb on - strandat 1326.314 kb on - strandat 1326.314 kb on - strandat 1326.314 kb on - strandat 1326.318 kb on + strandat 1326.318 kb on + strandat 1326.356 kb on + strandat 1326.356 kb on + strandat 1326.456 kb on - strand, within Psyr_1172at 1326.496 kb on - strand, within Psyr_1172at 1326.496 kb on - strand, within Psyr_1172at 1326.560 kb on - strand, within Psyr_1172at 1326.577 kb on + strand, within Psyr_1172at 1326.578 kb on - strand, within Psyr_1172at 1326.623 kb on + strand, within Psyr_1172at 1326.645 kb on + strand, within Psyr_1172at 1326.645 kb on + strand, within Psyr_1172at 1326.645 kb on + strand, within Psyr_1172at 1326.645 kb on + strand, within Psyr_1172at 1326.646 kb on - strand, within Psyr_1172at 1326.646 kb on - strand, within Psyr_1172

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
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1,322,925 - Psyr_1169 0.19 +3.2
1,323,053 + Psyr_1169 0.30 -1.5
1,323,163 + Psyr_1169 0.40 -0.7
1,323,163 + Psyr_1169 0.40 +0.4
1,323,163 + Psyr_1169 0.40 +2.3
1,323,163 + Psyr_1169 0.40 -2.1
1,323,164 - Psyr_1169 0.40 +1.0
1,323,164 - Psyr_1169 0.40 +1.5
1,323,164 - Psyr_1169 0.40 +4.5
1,323,386 + Psyr_1169 0.60 -2.3
1,323,386 + Psyr_1169 0.60 -1.4
1,323,387 - Psyr_1169 0.60 -3.7
1,323,404 + Psyr_1169 0.62 +2.0
1,323,404 + Psyr_1169 0.62 +4.4
1,323,521 + Psyr_1169 0.72 +2.0
1,323,710 + Psyr_1169 0.89 -1.2
1,323,710 + Psyr_1169 0.89 -3.5
1,323,710 + Psyr_1169 0.89 +4.0
1,323,711 - Psyr_1169 0.89 +1.6
1,323,711 - Psyr_1169 0.89 -1.1
1,323,714 + Psyr_1169 0.90 -2.4
1,323,714 + Psyr_1169 0.90 -2.7
1,323,714 + Psyr_1169 0.90 -2.5
1,323,714 + Psyr_1169 0.90 +0.4
1,323,714 + Psyr_1169 0.90 -0.5
1,323,714 + Psyr_1169 0.90 -0.0
1,323,715 - Psyr_1169 0.90 +2.0
1,323,715 - Psyr_1169 0.90 -3.5
1,323,715 - Psyr_1169 0.90 -1.4
1,323,747 - +0.6
1,323,898 + +2.6
1,324,056 + Psyr_1170 0.12 -0.0
1,324,056 + Psyr_1170 0.12 +0.1
1,324,056 + Psyr_1170 0.12 -1.8
1,324,057 - Psyr_1170 0.12 +1.6
1,324,057 - Psyr_1170 0.12 -3.8
1,324,057 - Psyr_1170 0.12 -0.5
1,324,129 + -0.0
1,324,130 - Psyr_1170 0.16 -1.6
1,324,130 - Psyr_1170 0.16 +2.6
1,324,256 + Psyr_1170 0.23 -1.2
1,324,256 + Psyr_1170 0.23 -1.8
1,324,257 - Psyr_1170 0.23 -0.4
1,324,258 + Psyr_1170 0.23 +2.6
1,324,259 - Psyr_1170 0.23 -1.8
1,324,456 + Psyr_1170 0.34 -4.2
1,324,456 + Psyr_1170 0.34 -0.5
1,324,456 + Psyr_1170 0.34 -2.2
1,324,457 - Psyr_1170 0.34 +4.6
1,324,457 - Psyr_1170 0.34 -0.0
1,324,457 - Psyr_1170 0.34 -0.6
1,324,457 - Psyr_1170 0.34 -0.0
1,324,738 + Psyr_1170 0.49 +0.1
1,324,739 - Psyr_1170 0.49 -0.2
1,324,832 - Psyr_1170 0.54 +2.0
1,324,951 + Psyr_1170 0.61 +1.6
1,324,952 - Psyr_1170 0.61 -0.8
1,325,204 - Psyr_1170 0.75 +3.9
1,325,204 - Psyr_1170 0.75 +2.8
1,325,237 - Psyr_1170 0.77 +1.2
1,325,350 - Psyr_1170 0.83 -1.4
1,325,353 + Psyr_1170 0.83 -0.5
1,325,354 - Psyr_1170 0.83 +0.7
1,325,354 - Psyr_1170 0.83 -0.5
1,325,450 - Psyr_1170 0.88 -1.3
1,325,561 + +2.0
1,325,561 + -0.1
1,325,562 - -2.3
1,325,562 - -0.1
1,325,636 + -1.5
1,325,669 + -0.8
1,325,669 + +1.0
1,325,669 + +3.2
1,325,669 + -0.8
1,325,669 + -0.6
1,325,669 + -2.3
1,325,669 + +2.0
1,325,669 + -2.3
1,325,670 - +1.6
1,325,670 - -0.6
1,325,670 - -0.0
1,325,670 - -0.0
1,325,671 + +2.3
1,325,671 + +2.0
1,325,671 + +0.8
1,325,672 - -1.4
1,325,672 - +1.0
1,325,729 - -1.7
1,325,740 - -2.6
1,325,746 + +4.5
1,325,839 + -2.1
1,325,840 - -4.5
1,325,843 - -3.5
1,325,926 + Psyr_1171 0.13 +2.3
1,325,927 - Psyr_1171 0.14 +1.6
1,325,927 - Psyr_1171 0.14 +0.4
1,325,927 - Psyr_1171 0.14 +1.0
1,325,972 + Psyr_1171 0.25 +3.0
1,325,973 - Psyr_1171 0.26 +3.2
1,326,100 + Psyr_1171 0.59 -2.1
1,326,100 + Psyr_1171 0.59 -3.9
1,326,100 + Psyr_1171 0.59 +2.6
1,326,100 + Psyr_1171 0.59 -1.8
1,326,101 - Psyr_1171 0.59 -0.5
1,326,101 - Psyr_1171 0.59 +2.6
1,326,104 + Psyr_1171 0.60 -3.6
1,326,104 + Psyr_1171 0.60 -0.0
1,326,104 + Psyr_1171 0.60 -4.1
1,326,104 + Psyr_1171 0.60 +1.0
1,326,104 + -3.3
1,326,104 + Psyr_1171 0.60 -1.3
1,326,105 - Psyr_1171 0.60 +2.0
1,326,105 - Psyr_1171 0.60 -1.5
1,326,105 - Psyr_1171 0.60 +2.6
1,326,105 - Psyr_1171 0.60 +0.1
1,326,105 - Psyr_1171 0.60 +4.7
1,326,105 - Psyr_1171 0.60 +1.6
1,326,105 - Psyr_1171 0.60 +1.2
1,326,105 - Psyr_1171 0.60 -1.3
1,326,105 - Psyr_1171 0.60 -1.3
1,326,167 + Psyr_1171 0.77 +1.6
1,326,167 + Psyr_1171 0.77 -2.2
1,326,167 + Psyr_1171 0.77 +2.0
1,326,167 + Psyr_1171 0.77 -3.0
1,326,167 + Psyr_1171 0.77 +4.9
1,326,167 + Psyr_1171 0.77 +1.6
1,326,167 + Psyr_1171 0.77 -0.0
1,326,167 + Psyr_1171 0.77 -1.3
1,326,167 + Psyr_1171 0.77 -4.1
1,326,167 + Psyr_1171 0.77 +1.6
1,326,167 + Psyr_1171 0.77 +2.0
1,326,168 - Psyr_1171 0.77 +0.2
1,326,168 - Psyr_1171 0.77 -0.7
1,326,168 - Psyr_1171 0.77 +0.7
1,326,168 - Psyr_1171 0.77 -0.0
1,326,168 - Psyr_1171 0.77 +4.3
1,326,168 - Psyr_1171 0.77 -1.8
1,326,168 - Psyr_1171 0.77 -1.0
1,326,168 - Psyr_1171 0.77 +1.6
1,326,168 - Psyr_1171 0.77 -4.2
1,326,260 - -0.5
1,326,267 + -0.0
1,326,267 + -4.3
1,326,268 - -0.1
1,326,268 - -1.2
1,326,313 + -2.0
1,326,313 + -1.6
1,326,313 + +2.3
1,326,314 - +0.3
1,326,314 - +2.0
1,326,314 - +1.0
1,326,314 - -2.7
1,326,314 - +3.6
1,326,314 - -0.2
1,326,318 + -0.8
1,326,318 + +1.6
1,326,356 + -1.6
1,326,356 + +2.6
1,326,456 - Psyr_1172 0.29 -0.3
1,326,496 - Psyr_1172 0.37 +0.3
1,326,496 - Psyr_1172 0.37 +2.3
1,326,560 - Psyr_1172 0.51 -2.0
1,326,577 + Psyr_1172 0.54 -1.6
1,326,578 - Psyr_1172 0.54 +1.6
1,326,623 + Psyr_1172 0.64 -2.6
1,326,645 + Psyr_1172 0.68 -1.4
1,326,645 + Psyr_1172 0.68 +0.5
1,326,645 + Psyr_1172 0.68 +2.3
1,326,645 + Psyr_1172 0.68 +3.7
1,326,646 - Psyr_1172 0.69 +3.8
1,326,646 - Psyr_1172 0.69 -1.9

Or see this region's nucleotide sequence