Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1168 and Psyr_1169 are separated by 9 nucleotides Psyr_1169 and Psyr_1170 are separated by 14 nucleotides
Psyr_1168: Psyr_1168 - nucleoside ABC transporter membrane protein, at 1,321,600 to 1,322,709
_1168
Psyr_1169: Psyr_1169 - nucleoside-binding protein, at 1,322,719 to 1,323,828
_1169
Psyr_1170: Psyr_1170 - Amidase, at 1,323,843 to 1,325,663
_1170
Position (kb) 1322
1323
1324 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 1322.072 kb on + strand, within Psyr_1168 at 1322.072 kb on + strand, within Psyr_1168 at 1322.072 kb on + strand, within Psyr_1168 at 1322.072 kb on + strand, within Psyr_1168 at 1322.072 kb on + strand, within Psyr_1168 at 1322.072 kb on + strand, within Psyr_1168 at 1322.073 kb on - strand, within Psyr_1168 at 1322.073 kb on - strand, within Psyr_1168 at 1322.073 kb on - strand, within Psyr_1168 at 1322.073 kb on - strand, within Psyr_1168 at 1322.073 kb on - strand, within Psyr_1168 at 1322.073 kb on - strand, within Psyr_1168 at 1322.073 kb on - strand, within Psyr_1168 at 1322.073 kb on - strand, within Psyr_1168 at 1322.073 kb on - strand, within Psyr_1168 at 1322.148 kb on + strand, within Psyr_1168 at 1322.148 kb on + strand, within Psyr_1168 at 1322.148 kb on + strand, within Psyr_1168 at 1322.148 kb on + strand, within Psyr_1168 at 1322.148 kb on + strand, within Psyr_1168 at 1322.148 kb on + strand, within Psyr_1168 at 1322.149 kb on - strand, within Psyr_1168 at 1322.149 kb on - strand, within Psyr_1168 at 1322.149 kb on - strand, within Psyr_1168 at 1322.149 kb on - strand, within Psyr_1168 at 1322.149 kb on - strand, within Psyr_1168 at 1322.150 kb on + strand, within Psyr_1168 at 1322.150 kb on + strand, within Psyr_1168 at 1322.150 kb on + strand, within Psyr_1168 at 1322.150 kb on + strand, within Psyr_1168 at 1322.150 kb on + strand, within Psyr_1168 at 1322.150 kb on + strand, within Psyr_1168 at 1322.150 kb on + strand, within Psyr_1168 at 1322.150 kb on + strand, within Psyr_1168 at 1322.150 kb on + strand, within Psyr_1168 at 1322.150 kb on + strand, within Psyr_1168 at 1322.150 kb on + strand, within Psyr_1168 at 1322.150 kb on + strand, within Psyr_1168 at 1322.150 kb on + strand, within Psyr_1168 at 1322.150 kb on + strand, within Psyr_1168 at 1322.150 kb on + strand, within Psyr_1168 at 1322.150 kb on + strand, within Psyr_1168 at 1322.151 kb on - strand, within Psyr_1168 at 1322.151 kb on - strand, within Psyr_1168 at 1322.151 kb on - strand, within Psyr_1168 at 1322.151 kb on - strand, within Psyr_1168 at 1322.151 kb on - strand, within Psyr_1168 at 1322.151 kb on - strand, within Psyr_1168 at 1322.151 kb on - strand, within Psyr_1168 at 1322.151 kb on - strand, within Psyr_1168 at 1322.151 kb on - strand, within Psyr_1168 at 1322.151 kb on - strand, within Psyr_1168 at 1322.151 kb on - strand, within Psyr_1168 at 1322.151 kb on - strand, within Psyr_1168 at 1322.247 kb on - strand, within Psyr_1168 at 1322.247 kb on - strand, within Psyr_1168 at 1322.247 kb on - strand, within Psyr_1168 at 1322.247 kb on - strand, within Psyr_1168 at 1322.247 kb on - strand, within Psyr_1168 at 1322.653 kb on - strand at 1322.653 kb on - strand at 1322.750 kb on + strand at 1322.750 kb on + strand at 1322.750 kb on + strand at 1322.751 kb on - strand at 1322.751 kb on - strand at 1322.925 kb on - strand, within Psyr_1169 at 1323.053 kb on + strand, within Psyr_1169 at 1323.163 kb on + strand, within Psyr_1169 at 1323.163 kb on + strand, within Psyr_1169 at 1323.163 kb on + strand, within Psyr_1169 at 1323.163 kb on + strand, within Psyr_1169 at 1323.164 kb on - strand, within Psyr_1169 at 1323.164 kb on - strand, within Psyr_1169 at 1323.164 kb on - strand, within Psyr_1169 at 1323.386 kb on + strand, within Psyr_1169 at 1323.386 kb on + strand, within Psyr_1169 at 1323.387 kb on - strand, within Psyr_1169 at 1323.404 kb on + strand, within Psyr_1169 at 1323.404 kb on + strand, within Psyr_1169 at 1323.521 kb on + strand, within Psyr_1169 at 1323.710 kb on + strand, within Psyr_1169 at 1323.710 kb on + strand, within Psyr_1169 at 1323.710 kb on + strand, within Psyr_1169 at 1323.711 kb on - strand, within Psyr_1169 at 1323.711 kb on - strand, within Psyr_1169 at 1323.714 kb on + strand, within Psyr_1169 at 1323.714 kb on + strand, within Psyr_1169 at 1323.714 kb on + strand, within Psyr_1169 at 1323.714 kb on + strand, within Psyr_1169 at 1323.714 kb on + strand, within Psyr_1169 at 1323.714 kb on + strand, within Psyr_1169 at 1323.715 kb on - strand, within Psyr_1169 at 1323.715 kb on - strand, within Psyr_1169 at 1323.715 kb on - strand, within Psyr_1169 at 1323.747 kb on - strand at 1323.898 kb on + strand at 1324.056 kb on + strand, within Psyr_1170 at 1324.056 kb on + strand, within Psyr_1170 at 1324.056 kb on + strand, within Psyr_1170 at 1324.057 kb on - strand, within Psyr_1170 at 1324.057 kb on - strand, within Psyr_1170 at 1324.057 kb on - strand, within Psyr_1170 at 1324.129 kb on + strand at 1324.130 kb on - strand, within Psyr_1170 at 1324.130 kb on - strand, within Psyr_1170 at 1324.256 kb on + strand, within Psyr_1170 at 1324.256 kb on + strand, within Psyr_1170 at 1324.257 kb on - strand, within Psyr_1170 at 1324.258 kb on + strand, within Psyr_1170 at 1324.259 kb on - strand, within Psyr_1170 at 1324.456 kb on + strand, within Psyr_1170 at 1324.456 kb on + strand, within Psyr_1170 at 1324.456 kb on + strand, within Psyr_1170 at 1324.457 kb on - strand, within Psyr_1170 at 1324.457 kb on - strand, within Psyr_1170 at 1324.457 kb on - strand, within Psyr_1170 at 1324.457 kb on - strand, within Psyr_1170 at 1324.738 kb on + strand, within Psyr_1170 at 1324.739 kb on - strand, within Psyr_1170
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 1,322,072 + Psyr_1168 0.43 -0.3 1,322,072 + Psyr_1168 0.43 +2.6 1,322,072 + Psyr_1168 0.43 -1.1 1,322,072 + Psyr_1168 0.43 +2.3 1,322,072 + Psyr_1168 0.43 -3.8 1,322,072 + Psyr_1168 0.43 -0.0 1,322,073 - Psyr_1168 0.43 -1.6 1,322,073 - Psyr_1168 0.43 -1.0 1,322,073 - Psyr_1168 0.43 +2.0 1,322,073 - Psyr_1168 0.43 -0.0 1,322,073 - Psyr_1168 0.43 -1.8 1,322,073 - Psyr_1168 0.43 +1.6 1,322,073 - Psyr_1168 0.43 -1.2 1,322,073 - Psyr_1168 0.43 +0.9 1,322,073 - Psyr_1168 0.43 -0.0 1,322,148 + Psyr_1168 0.49 -0.0 1,322,148 + Psyr_1168 0.49 +1.0 1,322,148 + Psyr_1168 0.49 +2.6 1,322,148 + Psyr_1168 0.49 -2.5 1,322,148 + Psyr_1168 0.49 +2.0 1,322,148 + Psyr_1168 0.49 +0.5 1,322,149 - Psyr_1168 0.49 -0.0 1,322,149 - Psyr_1168 0.49 +1.6 1,322,149 - Psyr_1168 0.49 +1.6 1,322,149 - Psyr_1168 0.49 +2.8 1,322,149 - Psyr_1168 0.49 +3.8 1,322,150 + Psyr_1168 0.50 +3.5 1,322,150 + Psyr_1168 0.50 -2.1 1,322,150 + Psyr_1168 0.50 -3.8 1,322,150 + Psyr_1168 0.50 +3.7 1,322,150 + Psyr_1168 0.50 +0.7 1,322,150 + Psyr_1168 0.50 -0.0 1,322,150 + Psyr_1168 0.50 -2.0 1,322,150 + Psyr_1168 0.50 -0.0 1,322,150 + Psyr_1168 0.50 -2.3 1,322,150 + Psyr_1168 0.50 -0.0 1,322,150 + Psyr_1168 0.50 -1.5 1,322,150 + Psyr_1168 0.50 -4.9 1,322,150 + Psyr_1168 0.50 -1.1 1,322,150 + Psyr_1168 0.50 -0.9 1,322,150 + Psyr_1168 0.50 -2.0 1,322,150 + Psyr_1168 0.50 -2.7 1,322,151 - Psyr_1168 0.50 +4.0 1,322,151 - Psyr_1168 0.50 -0.0 1,322,151 - Psyr_1168 0.50 -2.7 1,322,151 - Psyr_1168 0.50 +0.3 1,322,151 - Psyr_1168 0.50 +0.6 1,322,151 - Psyr_1168 0.50 +3.2 1,322,151 - Psyr_1168 0.50 -0.0 1,322,151 - Psyr_1168 0.50 -1.4 1,322,151 - Psyr_1168 0.50 -1.5 1,322,151 - Psyr_1168 0.50 +2.8 1,322,151 - Psyr_1168 0.50 -0.0 1,322,151 - Psyr_1168 0.50 +1.8 1,322,247 - Psyr_1168 0.58 -0.0 1,322,247 - Psyr_1168 0.58 +3.6 1,322,247 - Psyr_1168 0.58 -2.5 1,322,247 - Psyr_1168 0.58 -2.6 1,322,247 - Psyr_1168 0.58 +4.2 1,322,653 - -0.2 1,322,653 - +0.2 1,322,750 + -0.0 1,322,750 + -2.7 1,322,750 + -2.0 1,322,751 - +0.6 1,322,751 - -1.8 1,322,925 - Psyr_1169 0.19 +3.2 1,323,053 + Psyr_1169 0.30 -1.5 1,323,163 + Psyr_1169 0.40 -0.7 1,323,163 + Psyr_1169 0.40 +0.4 1,323,163 + Psyr_1169 0.40 +2.3 1,323,163 + Psyr_1169 0.40 -2.1 1,323,164 - Psyr_1169 0.40 +1.0 1,323,164 - Psyr_1169 0.40 +1.5 1,323,164 - Psyr_1169 0.40 +4.5 1,323,386 + Psyr_1169 0.60 -2.3 1,323,386 + Psyr_1169 0.60 -1.4 1,323,387 - Psyr_1169 0.60 -3.7 1,323,404 + Psyr_1169 0.62 +2.0 1,323,404 + Psyr_1169 0.62 +4.4 1,323,521 + Psyr_1169 0.72 +2.0 1,323,710 + Psyr_1169 0.89 -1.2 1,323,710 + Psyr_1169 0.89 -3.5 1,323,710 + Psyr_1169 0.89 +4.0 1,323,711 - Psyr_1169 0.89 +1.6 1,323,711 - Psyr_1169 0.89 -1.1 1,323,714 + Psyr_1169 0.90 -2.4 1,323,714 + Psyr_1169 0.90 -2.7 1,323,714 + Psyr_1169 0.90 -2.5 1,323,714 + Psyr_1169 0.90 +0.4 1,323,714 + Psyr_1169 0.90 -0.5 1,323,714 + Psyr_1169 0.90 -0.0 1,323,715 - Psyr_1169 0.90 +2.0 1,323,715 - Psyr_1169 0.90 -3.5 1,323,715 - Psyr_1169 0.90 -1.4 1,323,747 - +0.6 1,323,898 + +2.6 1,324,056 + Psyr_1170 0.12 -0.0 1,324,056 + Psyr_1170 0.12 +0.1 1,324,056 + Psyr_1170 0.12 -1.8 1,324,057 - Psyr_1170 0.12 +1.6 1,324,057 - Psyr_1170 0.12 -3.8 1,324,057 - Psyr_1170 0.12 -0.5 1,324,129 + -0.0 1,324,130 - Psyr_1170 0.16 -1.6 1,324,130 - Psyr_1170 0.16 +2.6 1,324,256 + Psyr_1170 0.23 -1.2 1,324,256 + Psyr_1170 0.23 -1.8 1,324,257 - Psyr_1170 0.23 -0.4 1,324,258 + Psyr_1170 0.23 +2.6 1,324,259 - Psyr_1170 0.23 -1.8 1,324,456 + Psyr_1170 0.34 -4.2 1,324,456 + Psyr_1170 0.34 -0.5 1,324,456 + Psyr_1170 0.34 -2.2 1,324,457 - Psyr_1170 0.34 +4.6 1,324,457 - Psyr_1170 0.34 -0.0 1,324,457 - Psyr_1170 0.34 -0.6 1,324,457 - Psyr_1170 0.34 -0.0 1,324,738 + Psyr_1170 0.49 +0.1 1,324,739 - Psyr_1170 0.49 -0.2
Or see this region's nucleotide sequence