Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1162

Experiment: KB with Mitomycin C 0.625 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1160 and Psyr_1161 are separated by 107 nucleotidesPsyr_1161 and Psyr_1162 overlap by 4 nucleotidesPsyr_1162 and Psyr_1163 overlap by 1 nucleotidesPsyr_1163 and Psyr_1164 overlap by 4 nucleotides Psyr_1160: Psyr_1160 - Uncharacterized protein conserved in bacteria-like protein, at 1,314,808 to 1,315,554 _1160 Psyr_1161: Psyr_1161 - transcriptional regulator, GntR family, at 1,315,662 to 1,316,348 _1161 Psyr_1162: Psyr_1162 - conserved hypothetical protein, at 1,316,345 to 1,316,740 _1162 Psyr_1163: Psyr_1163 - Isochorismatase hydrolase, at 1,316,740 to 1,317,417 _1163 Psyr_1164: Psyr_1164 - nucleoside ABC transporter ATP-binding protein, at 1,317,414 to 1,318,949 _1164 Position (kb) 1316 1317Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4 5at 1315.408 kb on + strand, within Psyr_1160at 1315.408 kb on + strand, within Psyr_1160at 1315.408 kb on + strand, within Psyr_1160at 1315.408 kb on + strand, within Psyr_1160at 1315.408 kb on + strand, within Psyr_1160at 1315.408 kb on + strand, within Psyr_1160at 1315.408 kb on + strand, within Psyr_1160at 1315.408 kb on + strand, within Psyr_1160at 1315.409 kb on - strand, within Psyr_1160at 1315.409 kb on - strand, within Psyr_1160at 1315.409 kb on - strand, within Psyr_1160at 1315.409 kb on - strand, within Psyr_1160at 1315.409 kb on - strand, within Psyr_1160at 1315.432 kb on - strand, within Psyr_1160at 1315.432 kb on - strand, within Psyr_1160at 1315.477 kb on + strand, within Psyr_1160at 1315.553 kb on - strandat 1315.574 kb on - strandat 1315.617 kb on + strandat 1315.617 kb on + strandat 1315.618 kb on - strandat 1315.618 kb on - strandat 1315.654 kb on + strandat 1315.655 kb on - strandat 1315.716 kb on + strandat 1315.716 kb on + strandat 1315.716 kb on + strandat 1315.716 kb on + strandat 1315.717 kb on - strandat 1315.717 kb on - strandat 1315.717 kb on - strandat 1315.737 kb on + strand, within Psyr_1161at 1315.737 kb on + strand, within Psyr_1161at 1315.737 kb on + strand, within Psyr_1161at 1315.737 kb on + strand, within Psyr_1161at 1315.737 kb on + strand, within Psyr_1161at 1315.737 kb on + strand, within Psyr_1161at 1315.738 kb on - strand, within Psyr_1161at 1315.738 kb on - strand, within Psyr_1161at 1315.738 kb on - strand, within Psyr_1161at 1315.738 kb on - strand, within Psyr_1161at 1315.738 kb on - strand, within Psyr_1161at 1315.758 kb on + strand, within Psyr_1161at 1315.816 kb on + strand, within Psyr_1161at 1315.816 kb on + strand, within Psyr_1161at 1315.816 kb on + strand, within Psyr_1161at 1315.816 kb on + strand, within Psyr_1161at 1315.816 kb on + strand, within Psyr_1161at 1315.816 kb on + strand, within Psyr_1161at 1315.817 kb on - strand, within Psyr_1161at 1315.817 kb on - strand, within Psyr_1161at 1315.817 kb on - strand, within Psyr_1161at 1315.817 kb on - strand, within Psyr_1161at 1315.820 kb on + strand, within Psyr_1161at 1315.820 kb on + strand, within Psyr_1161at 1315.820 kb on + strand, within Psyr_1161at 1315.820 kb on + strand, within Psyr_1161at 1315.820 kb on + strand, within Psyr_1161at 1315.820 kb on + strand, within Psyr_1161at 1315.820 kb on + strand, within Psyr_1161at 1315.820 kb on + strand, within Psyr_1161at 1315.820 kb on + strand, within Psyr_1161at 1315.820 kb on + strand, within Psyr_1161at 1315.820 kb on + strand, within Psyr_1161at 1315.820 kb on + strand, within Psyr_1161at 1315.820 kb on + strand, within Psyr_1161at 1315.820 kb on + strand, within Psyr_1161at 1315.821 kb on - strand, within Psyr_1161at 1315.821 kb on - strand, within Psyr_1161at 1315.821 kb on - strand, within Psyr_1161at 1315.821 kb on - strand, within Psyr_1161at 1315.821 kb on - strand, within Psyr_1161at 1315.821 kb on - strand, within Psyr_1161at 1315.821 kb on - strand, within Psyr_1161at 1315.821 kb on - strand, within Psyr_1161at 1315.821 kb on - strand, within Psyr_1161at 1315.821 kb on - strand, within Psyr_1161at 1315.821 kb on - strand, within Psyr_1161at 1315.821 kb on - strand, within Psyr_1161at 1315.821 kb on - strand, within Psyr_1161at 1315.821 kb on - strand, within Psyr_1161at 1315.821 kb on - strand, within Psyr_1161at 1315.866 kb on - strand, within Psyr_1161at 1315.973 kb on + strand, within Psyr_1161at 1315.973 kb on + strand, within Psyr_1161at 1315.973 kb on + strand, within Psyr_1161at 1315.973 kb on + strand, within Psyr_1161at 1315.973 kb on + strand, within Psyr_1161at 1315.974 kb on - strand, within Psyr_1161at 1315.974 kb on - strand, within Psyr_1161at 1315.974 kb on - strand, within Psyr_1161at 1315.974 kb on - strand, within Psyr_1161at 1315.974 kb on - strand, within Psyr_1161at 1315.974 kb on - strand, within Psyr_1161at 1315.977 kb on + strand, within Psyr_1161at 1315.977 kb on + strand, within Psyr_1161at 1315.977 kb on + strand, within Psyr_1161at 1315.977 kb on + strand, within Psyr_1161at 1315.977 kb on + strand, within Psyr_1161at 1315.977 kb on + strand, within Psyr_1161at 1315.977 kb on + strand, within Psyr_1161at 1315.977 kb on + strand, within Psyr_1161at 1315.977 kb on + strand, within Psyr_1161at 1315.977 kb on + strand, within Psyr_1161at 1315.977 kb on + strand, within Psyr_1161at 1315.977 kb on + strand, within Psyr_1161at 1315.977 kb on + strand, within Psyr_1161at 1315.977 kb on + strand, within Psyr_1161at 1315.977 kb on + strand, within Psyr_1161at 1315.977 kb on + strand, within Psyr_1161at 1315.978 kb on - strand, within Psyr_1161at 1315.978 kb on - strand, within Psyr_1161at 1315.978 kb on - strand, within Psyr_1161at 1315.978 kb on - strand, within Psyr_1161at 1315.978 kb on - strand, within Psyr_1161at 1315.978 kb on - strand, within Psyr_1161at 1315.978 kb on - strand, within Psyr_1161at 1315.978 kb on - strand, within Psyr_1161at 1315.978 kb on - strand, within Psyr_1161at 1315.978 kb on - strand, within Psyr_1161at 1316.021 kb on + strand, within Psyr_1161at 1316.022 kb on - strand, within Psyr_1161at 1316.022 kb on - strand, within Psyr_1161at 1316.098 kb on + strand, within Psyr_1161at 1316.098 kb on + strand, within Psyr_1161at 1316.098 kb on + strand, within Psyr_1161at 1316.099 kb on - strand, within Psyr_1161at 1316.099 kb on - strand, within Psyr_1161at 1316.168 kb on - strand, within Psyr_1161at 1316.189 kb on - strand, within Psyr_1161at 1316.272 kb on + strand, within Psyr_1161at 1316.272 kb on + strand, within Psyr_1161at 1316.272 kb on + strand, within Psyr_1161at 1316.272 kb on + strand, within Psyr_1161at 1316.273 kb on - strand, within Psyr_1161at 1316.273 kb on - strand, within Psyr_1161at 1316.640 kb on + strand, within Psyr_1162at 1316.640 kb on + strand, within Psyr_1162at 1316.640 kb on + strand, within Psyr_1162at 1316.641 kb on - strand, within Psyr_1162at 1316.641 kb on - strand, within Psyr_1162at 1316.641 kb on - strand, within Psyr_1162at 1316.641 kb on - strand, within Psyr_1162at 1316.686 kb on - strand, within Psyr_1162at 1316.858 kb on + strand, within Psyr_1163at 1316.858 kb on + strand, within Psyr_1163at 1316.859 kb on - strand, within Psyr_1163at 1316.859 kb on - strand, within Psyr_1163at 1316.859 kb on - strand, within Psyr_1163at 1316.859 kb on - strand, within Psyr_1163at 1317.269 kb on - strand, within Psyr_1163at 1317.708 kb on + strand, within Psyr_1164at 1317.709 kb on - strand, within Psyr_1164at 1317.709 kb on - strand, within Psyr_1164

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
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1,315,408 + Psyr_1160 0.80 +0.0
1,315,408 + Psyr_1160 0.80 +4.1
1,315,408 + Psyr_1160 0.80 -0.6
1,315,408 + Psyr_1160 0.80 +2.3
1,315,408 + Psyr_1160 0.80 -2.8
1,315,408 + Psyr_1160 0.80 -4.2
1,315,408 + Psyr_1160 0.80 -0.3
1,315,408 + Psyr_1160 0.80 -0.9
1,315,409 - Psyr_1160 0.80 +1.0
1,315,409 - Psyr_1160 0.80 -2.2
1,315,409 - Psyr_1160 0.80 -1.0
1,315,409 - Psyr_1160 0.80 -0.7
1,315,409 - Psyr_1160 0.80 -3.6
1,315,432 - Psyr_1160 0.84 +1.6
1,315,432 - Psyr_1160 0.84 +0.0
1,315,477 + Psyr_1160 0.90 +0.0
1,315,553 - -4.1
1,315,574 - +0.3
1,315,617 + -4.0
1,315,617 + +2.8
1,315,618 - -3.7
1,315,618 - +0.0
1,315,654 + -0.6
1,315,655 - -3.8
1,315,716 + +3.0
1,315,716 + -2.7
1,315,716 + +1.6
1,315,716 + +3.7
1,315,717 - +1.6
1,315,717 - +0.0
1,315,717 - +2.0
1,315,737 + Psyr_1161 0.11 +0.6
1,315,737 + Psyr_1161 0.11 +0.0
1,315,737 + Psyr_1161 0.11 +3.0
1,315,737 + Psyr_1161 0.11 +0.1
1,315,737 + Psyr_1161 0.11 -2.8
1,315,737 + Psyr_1161 0.11 -2.8
1,315,738 - Psyr_1161 0.11 +1.6
1,315,738 - Psyr_1161 0.11 +0.0
1,315,738 - Psyr_1161 0.11 -2.3
1,315,738 - Psyr_1161 0.11 -2.0
1,315,738 - Psyr_1161 0.11 -2.0
1,315,758 + Psyr_1161 0.14 +0.3
1,315,816 + Psyr_1161 0.22 +2.6
1,315,816 + Psyr_1161 0.22 -0.1
1,315,816 + Psyr_1161 0.22 +1.0
1,315,816 + Psyr_1161 0.22 +4.0
1,315,816 + Psyr_1161 0.22 +0.0
1,315,816 + Psyr_1161 0.22 +1.3
1,315,817 - Psyr_1161 0.23 -5.0
1,315,817 - Psyr_1161 0.23 +0.0
1,315,817 - Psyr_1161 0.23 +0.2
1,315,817 - Psyr_1161 0.23 -4.5
1,315,820 + Psyr_1161 0.23 -1.0
1,315,820 + Psyr_1161 0.23 -0.7
1,315,820 + Psyr_1161 0.23 -4.3
1,315,820 + Psyr_1161 0.23 -1.4
1,315,820 + Psyr_1161 0.23 -2.4
1,315,820 + Psyr_1161 0.23 +2.8
1,315,820 + Psyr_1161 0.23 -1.9
1,315,820 + Psyr_1161 0.23 +1.0
1,315,820 + Psyr_1161 0.23 -0.6
1,315,820 + Psyr_1161 0.23 +0.2
1,315,820 + Psyr_1161 0.23 -1.2
1,315,820 + Psyr_1161 0.23 -1.1
1,315,820 + Psyr_1161 0.23 -0.5
1,315,820 + Psyr_1161 0.23 -2.3
1,315,821 - Psyr_1161 0.23 -3.3
1,315,821 - Psyr_1161 0.23 -3.0
1,315,821 - Psyr_1161 0.23 -1.1
1,315,821 - Psyr_1161 0.23 -3.2
1,315,821 - Psyr_1161 0.23 +0.0
1,315,821 - Psyr_1161 0.23 +3.0
1,315,821 - Psyr_1161 0.23 +2.3
1,315,821 - Psyr_1161 0.23 -2.2
1,315,821 - Psyr_1161 0.23 -2.9
1,315,821 - Psyr_1161 0.23 -0.6
1,315,821 - Psyr_1161 0.23 -1.9
1,315,821 - Psyr_1161 0.23 -1.1
1,315,821 - Psyr_1161 0.23 +2.3
1,315,821 - Psyr_1161 0.23 -3.0
1,315,821 - Psyr_1161 0.23 +2.3
1,315,866 - Psyr_1161 0.30 +0.0
1,315,973 + Psyr_1161 0.45 +3.3
1,315,973 + Psyr_1161 0.45 -0.9
1,315,973 + Psyr_1161 0.45 +0.0
1,315,973 + Psyr_1161 0.45 +2.3
1,315,973 + Psyr_1161 0.45 -0.1
1,315,974 - Psyr_1161 0.45 +4.1
1,315,974 - Psyr_1161 0.45 +0.3
1,315,974 - Psyr_1161 0.45 +1.7
1,315,974 - Psyr_1161 0.45 -4.2
1,315,974 - Psyr_1161 0.45 +0.0
1,315,974 - Psyr_1161 0.45 +2.6
1,315,977 + Psyr_1161 0.46 -1.8
1,315,977 + Psyr_1161 0.46 +0.0
1,315,977 + Psyr_1161 0.46 -1.4
1,315,977 + Psyr_1161 0.46 +0.0
1,315,977 + Psyr_1161 0.46 +0.4
1,315,977 + Psyr_1161 0.46 +2.0
1,315,977 + Psyr_1161 0.46 +4.8
1,315,977 + Psyr_1161 0.46 +3.0
1,315,977 + Psyr_1161 0.46 +4.1
1,315,977 + Psyr_1161 0.46 +4.6
1,315,977 + Psyr_1161 0.46 -0.3
1,315,977 + Psyr_1161 0.46 -1.2
1,315,977 + Psyr_1161 0.46 +0.5
1,315,977 + Psyr_1161 0.46 -1.6
1,315,977 + Psyr_1161 0.46 +0.9
1,315,977 + Psyr_1161 0.46 +2.6
1,315,978 - Psyr_1161 0.46 +0.0
1,315,978 - Psyr_1161 0.46 -5.0
1,315,978 - Psyr_1161 0.46 -4.0
1,315,978 - Psyr_1161 0.46 +2.3
1,315,978 - Psyr_1161 0.46 +0.2
1,315,978 - Psyr_1161 0.46 -3.6
1,315,978 - Psyr_1161 0.46 +1.6
1,315,978 - Psyr_1161 0.46 +0.2
1,315,978 - Psyr_1161 0.46 -3.3
1,315,978 - Psyr_1161 0.46 -4.1
1,316,021 + Psyr_1161 0.52 +2.3
1,316,022 - Psyr_1161 0.52 +0.4
1,316,022 - Psyr_1161 0.52 -4.2
1,316,098 + Psyr_1161 0.63 -2.7
1,316,098 + Psyr_1161 0.63 +4.9
1,316,098 + Psyr_1161 0.63 +0.4
1,316,099 - Psyr_1161 0.64 -1.8
1,316,099 - Psyr_1161 0.64 +3.6
1,316,168 - Psyr_1161 0.74 -2.4
1,316,189 - Psyr_1161 0.77 +2.0
1,316,272 + Psyr_1161 0.89 -2.7
1,316,272 + Psyr_1161 0.89 +0.5
1,316,272 + Psyr_1161 0.89 -0.7
1,316,272 + Psyr_1161 0.89 -0.9
1,316,273 - Psyr_1161 0.89 +1.0
1,316,273 - Psyr_1161 0.89 +2.3
1,316,640 + Psyr_1162 0.74 +1.5
1,316,640 + Psyr_1162 0.74 -0.0
1,316,640 + Psyr_1162 0.74 +3.8
1,316,641 - Psyr_1162 0.75 +3.5
1,316,641 - Psyr_1162 0.75 +4.4
1,316,641 - Psyr_1162 0.75 -2.2
1,316,641 - Psyr_1162 0.75 +2.8
1,316,686 - Psyr_1162 0.86 -1.0
1,316,858 + Psyr_1163 0.17 -1.9
1,316,858 + Psyr_1163 0.17 -4.0
1,316,859 - Psyr_1163 0.18 +1.0
1,316,859 - Psyr_1163 0.18 -1.7
1,316,859 - Psyr_1163 0.18 -1.0
1,316,859 - Psyr_1163 0.18 -0.7
1,317,269 - Psyr_1163 0.78 -0.3
1,317,708 + Psyr_1164 0.19 -0.0
1,317,709 - Psyr_1164 0.19 +2.3
1,317,709 - Psyr_1164 0.19 +2.6

Or see this region's nucleotide sequence