Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1131 and Psyr_1132 are separated by 21 nucleotides Psyr_1132 and Psyr_1133 are separated by 131 nucleotides Psyr_1133 and Psyr_1134 overlap by 4 nucleotides Psyr_1134 and Psyr_1135 are separated by 1 nucleotides
Psyr_1131: Psyr_1131 - Fimbrial protein, at 1,282,298 to 1,282,882
_1131
Psyr_1132: Psyr_1132 - pili assembly chaperone:Bacterial pili assembly chaperone, at 1,282,904 to 1,283,698
_1132
Psyr_1133: Psyr_1133 - Fimbrial biogenesis outer membrane usher protein, at 1,283,830 to 1,286,364
_1133
Psyr_1134: Psyr_1134 - pili assembly chaperone, at 1,286,361 to 1,287,146
_1134
Psyr_1135: Psyr_1135 - conserved hypothetical protein, at 1,287,148 to 1,288,146
_1135
Position (kb)
1283
1284
1285
1286
1287 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 1282.874 kb on + strand at 1282.874 kb on + strand at 1282.874 kb on + strand at 1282.875 kb on - strand at 1282.880 kb on + strand at 1283.022 kb on + strand, within Psyr_1132 at 1283.030 kb on - strand, within Psyr_1132 at 1283.030 kb on - strand, within Psyr_1132 at 1283.030 kb on - strand, within Psyr_1132 at 1283.045 kb on + strand, within Psyr_1132 at 1283.046 kb on - strand, within Psyr_1132 at 1283.224 kb on - strand, within Psyr_1132 at 1283.224 kb on - strand, within Psyr_1132 at 1283.278 kb on - strand, within Psyr_1132 at 1283.337 kb on + strand, within Psyr_1132 at 1283.338 kb on - strand, within Psyr_1132 at 1283.349 kb on + strand, within Psyr_1132 at 1283.349 kb on + strand, within Psyr_1132 at 1283.349 kb on + strand, within Psyr_1132 at 1283.349 kb on + strand, within Psyr_1132 at 1283.349 kb on + strand, within Psyr_1132 at 1283.350 kb on - strand, within Psyr_1132 at 1283.491 kb on - strand, within Psyr_1132 at 1283.781 kb on - strand at 1283.814 kb on + strand at 1283.814 kb on + strand at 1283.851 kb on - strand at 1283.853 kb on + strand at 1283.853 kb on + strand at 1283.853 kb on + strand at 1283.854 kb on - strand at 1283.862 kb on + strand at 1283.863 kb on - strand at 1284.048 kb on + strand at 1284.048 kb on + strand at 1284.048 kb on + strand at 1284.048 kb on + strand at 1284.049 kb on - strand at 1284.053 kb on + strand at 1284.053 kb on + strand at 1284.053 kb on + strand at 1284.053 kb on + strand at 1284.053 kb on + strand at 1284.053 kb on + strand at 1284.053 kb on + strand at 1284.053 kb on + strand at 1284.053 kb on + strand at 1284.053 kb on + strand at 1284.054 kb on - strand at 1284.054 kb on - strand at 1284.054 kb on - strand at 1284.054 kb on - strand at 1284.078 kb on + strand at 1284.078 kb on + strand at 1284.078 kb on + strand at 1284.078 kb on + strand at 1284.082 kb on + strand at 1284.082 kb on + strand at 1284.082 kb on + strand at 1284.082 kb on + strand at 1284.082 kb on + strand at 1284.083 kb on - strand at 1284.083 kb on - strand at 1284.083 kb on - strand at 1284.346 kb on + strand, within Psyr_1133 at 1284.391 kb on - strand, within Psyr_1133 at 1284.397 kb on + strand, within Psyr_1133 at 1284.397 kb on + strand, within Psyr_1133 at 1284.397 kb on + strand, within Psyr_1133 at 1284.397 kb on + strand, within Psyr_1133 at 1284.398 kb on - strand, within Psyr_1133 at 1284.448 kb on + strand, within Psyr_1133 at 1284.448 kb on + strand, within Psyr_1133 at 1284.448 kb on + strand, within Psyr_1133 at 1284.449 kb on - strand, within Psyr_1133 at 1284.449 kb on - strand, within Psyr_1133 at 1284.449 kb on - strand, within Psyr_1133 at 1284.451 kb on + strand, within Psyr_1133 at 1284.451 kb on + strand, within Psyr_1133 at 1284.451 kb on + strand, within Psyr_1133 at 1284.452 kb on - strand, within Psyr_1133 at 1284.452 kb on - strand, within Psyr_1133 at 1284.452 kb on - strand, within Psyr_1133 at 1284.452 kb on - strand, within Psyr_1133 at 1284.452 kb on - strand, within Psyr_1133 at 1284.555 kb on + strand, within Psyr_1133 at 1284.555 kb on + strand, within Psyr_1133 at 1284.556 kb on - strand, within Psyr_1133 at 1284.703 kb on + strand, within Psyr_1133 at 1284.703 kb on + strand, within Psyr_1133 at 1284.704 kb on - strand, within Psyr_1133 at 1284.820 kb on + strand, within Psyr_1133 at 1284.820 kb on + strand, within Psyr_1133 at 1284.820 kb on + strand, within Psyr_1133 at 1284.821 kb on - strand, within Psyr_1133 at 1284.821 kb on - strand, within Psyr_1133 at 1284.821 kb on - strand, within Psyr_1133 at 1284.878 kb on + strand, within Psyr_1133 at 1284.879 kb on - strand, within Psyr_1133 at 1284.879 kb on - strand, within Psyr_1133 at 1285.018 kb on + strand, within Psyr_1133 at 1285.018 kb on + strand, within Psyr_1133 at 1285.018 kb on + strand, within Psyr_1133 at 1285.018 kb on + strand, within Psyr_1133 at 1285.018 kb on + strand, within Psyr_1133 at 1285.019 kb on - strand, within Psyr_1133 at 1285.019 kb on - strand, within Psyr_1133 at 1285.019 kb on - strand, within Psyr_1133 at 1285.072 kb on + strand, within Psyr_1133 at 1285.073 kb on - strand, within Psyr_1133 at 1285.088 kb on + strand, within Psyr_1133 at 1285.088 kb on + strand, within Psyr_1133 at 1285.088 kb on + strand, within Psyr_1133 at 1285.088 kb on + strand, within Psyr_1133 at 1285.088 kb on + strand, within Psyr_1133 at 1285.088 kb on + strand, within Psyr_1133 at 1285.089 kb on - strand, within Psyr_1133 at 1285.089 kb on - strand, within Psyr_1133 at 1285.089 kb on - strand, within Psyr_1133 at 1285.089 kb on - strand, within Psyr_1133 at 1285.089 kb on - strand, within Psyr_1133 at 1285.089 kb on - strand, within Psyr_1133 at 1285.089 kb on - strand, within Psyr_1133 at 1285.204 kb on - strand, within Psyr_1133 at 1285.365 kb on - strand, within Psyr_1133 at 1285.365 kb on - strand, within Psyr_1133 at 1285.447 kb on + strand, within Psyr_1133 at 1285.448 kb on - strand, within Psyr_1133 at 1285.448 kb on - strand, within Psyr_1133 at 1285.448 kb on - strand, within Psyr_1133 at 1285.456 kb on + strand, within Psyr_1133 at 1285.456 kb on + strand, within Psyr_1133 at 1285.456 kb on + strand, within Psyr_1133 at 1285.456 kb on + strand, within Psyr_1133 at 1285.456 kb on + strand, within Psyr_1133 at 1285.456 kb on + strand, within Psyr_1133 at 1285.456 kb on + strand, within Psyr_1133 at 1285.456 kb on + strand, within Psyr_1133 at 1285.456 kb on + strand, within Psyr_1133 at 1285.457 kb on - strand, within Psyr_1133 at 1285.457 kb on - strand, within Psyr_1133 at 1285.457 kb on - strand, within Psyr_1133 at 1285.483 kb on + strand, within Psyr_1133 at 1285.484 kb on - strand, within Psyr_1133 at 1285.484 kb on - strand, within Psyr_1133 at 1285.484 kb on - strand, within Psyr_1133 at 1285.484 kb on - strand, within Psyr_1133 at 1285.636 kb on + strand, within Psyr_1133 at 1285.636 kb on + strand, within Psyr_1133 at 1285.690 kb on + strand, within Psyr_1133 at 1285.691 kb on - strand, within Psyr_1133 at 1285.786 kb on - strand, within Psyr_1133 at 1285.786 kb on - strand, within Psyr_1133 at 1285.786 kb on - strand, within Psyr_1133 at 1285.786 kb on - strand, within Psyr_1133 at 1285.786 kb on - strand, within Psyr_1133 at 1285.801 kb on + strand, within Psyr_1133 at 1285.801 kb on + strand, within Psyr_1133 at 1285.802 kb on - strand, within Psyr_1133 at 1285.979 kb on - strand, within Psyr_1133 at 1286.336 kb on - strand at 1286.354 kb on + strand at 1286.462 kb on - strand, within Psyr_1134 at 1286.530 kb on + strand, within Psyr_1134 at 1286.662 kb on - strand, within Psyr_1134 at 1286.709 kb on + strand, within Psyr_1134 at 1286.709 kb on + strand, within Psyr_1134 at 1286.709 kb on + strand, within Psyr_1134 at 1286.709 kb on + strand, within Psyr_1134 at 1286.709 kb on + strand, within Psyr_1134 at 1286.709 kb on + strand, within Psyr_1134 at 1286.709 kb on + strand, within Psyr_1134 at 1286.709 kb on + strand, within Psyr_1134 at 1286.709 kb on + strand, within Psyr_1134 at 1286.709 kb on + strand, within Psyr_1134 at 1286.709 kb on + strand, within Psyr_1134 at 1286.709 kb on + strand, within Psyr_1134 at 1286.709 kb on + strand, within Psyr_1134 at 1286.709 kb on + strand, within Psyr_1134 at 1286.710 kb on - strand, within Psyr_1134 at 1286.710 kb on - strand, within Psyr_1134 at 1286.710 kb on - strand, within Psyr_1134 at 1286.710 kb on - strand, within Psyr_1134 at 1286.710 kb on - strand, within Psyr_1134 at 1286.710 kb on - strand, within Psyr_1134 at 1286.710 kb on - strand, within Psyr_1134 at 1286.710 kb on - strand, within Psyr_1134 at 1286.710 kb on - strand, within Psyr_1134 at 1286.710 kb on - strand, within Psyr_1134 at 1286.710 kb on - strand, within Psyr_1134 at 1286.710 kb on - strand, within Psyr_1134 at 1286.710 kb on - strand, within Psyr_1134 at 1286.710 kb on - strand, within Psyr_1134 at 1286.788 kb on - strand, within Psyr_1134 at 1287.051 kb on + strand, within Psyr_1134 at 1287.147 kb on + strand at 1287.147 kb on + strand at 1287.200 kb on + strand at 1287.200 kb on + strand at 1287.234 kb on + strand at 1287.234 kb on + strand at 1287.283 kb on - strand, within Psyr_1135
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 1,282,874 + -3.6 1,282,874 + +4.2 1,282,874 + +1.6 1,282,875 - -3.2 1,282,880 + -1.9 1,283,022 + Psyr_1132 0.15 -3.5 1,283,030 - Psyr_1132 0.16 -1.4 1,283,030 - Psyr_1132 0.16 +2.6 1,283,030 - Psyr_1132 0.16 +0.3 1,283,045 + Psyr_1132 0.18 -1.6 1,283,046 - Psyr_1132 0.18 +2.3 1,283,224 - Psyr_1132 0.40 -2.7 1,283,224 - Psyr_1132 0.40 -0.0 1,283,278 - Psyr_1132 0.47 +3.1 1,283,337 + Psyr_1132 0.54 -2.8 1,283,338 - Psyr_1132 0.55 -1.6 1,283,349 + Psyr_1132 0.56 -0.0 1,283,349 + Psyr_1132 0.56 -0.2 1,283,349 + Psyr_1132 0.56 -2.3 1,283,349 + Psyr_1132 0.56 +3.4 1,283,349 + Psyr_1132 0.56 +3.3 1,283,350 - Psyr_1132 0.56 -4.3 1,283,491 - Psyr_1132 0.74 -0.0 1,283,781 - -0.1 1,283,814 + -3.1 1,283,814 + +2.6 1,283,851 - -0.0 1,283,853 + +2.3 1,283,853 + -0.0 1,283,853 + +4.1 1,283,854 - +3.3 1,283,862 + -0.3 1,283,863 - -1.8 1,284,048 + +0.8 1,284,048 + +3.0 1,284,048 + -1.4 1,284,048 + -4.2 1,284,049 - -1.0 1,284,053 + -0.0 1,284,053 + -0.8 1,284,053 + +0.5 1,284,053 + -0.8 1,284,053 + -1.0 1,284,053 + -2.1 1,284,053 + -0.3 1,284,053 + +1.0 1,284,053 + -0.7 1,284,053 + -4.3 1,284,054 - +3.9 1,284,054 - -2.0 1,284,054 - -1.3 1,284,054 - -1.1 1,284,078 + -0.0 1,284,078 + +1.0 1,284,078 + -0.9 1,284,078 + -0.7 1,284,082 + +1.6 1,284,082 + -4.2 1,284,082 + -0.8 1,284,082 + -1.8 1,284,082 + -2.3 1,284,083 - -3.7 1,284,083 - +1.0 1,284,083 - -1.7 1,284,346 + Psyr_1133 0.20 +0.2 1,284,391 - Psyr_1133 0.22 -2.5 1,284,397 + Psyr_1133 0.22 -0.0 1,284,397 + Psyr_1133 0.22 +2.0 1,284,397 + Psyr_1133 0.22 -3.3 1,284,397 + Psyr_1133 0.22 +2.3 1,284,398 - Psyr_1133 0.22 -1.0 1,284,448 + Psyr_1133 0.24 -1.2 1,284,448 + Psyr_1133 0.24 -2.5 1,284,448 + Psyr_1133 0.24 -1.7 1,284,449 - Psyr_1133 0.24 +3.4 1,284,449 - Psyr_1133 0.24 -1.6 1,284,449 - Psyr_1133 0.24 +1.7 1,284,451 + Psyr_1133 0.24 +3.0 1,284,451 + Psyr_1133 0.24 +0.6 1,284,451 + Psyr_1133 0.24 +0.4 1,284,452 - Psyr_1133 0.25 -3.5 1,284,452 - Psyr_1133 0.25 +2.8 1,284,452 - Psyr_1133 0.25 -2.4 1,284,452 - Psyr_1133 0.25 -1.5 1,284,452 - Psyr_1133 0.25 -0.0 1,284,555 + Psyr_1133 0.29 +1.0 1,284,555 + Psyr_1133 0.29 -0.9 1,284,556 - Psyr_1133 0.29 -0.0 1,284,703 + Psyr_1133 0.34 +2.8 1,284,703 + Psyr_1133 0.34 -1.3 1,284,704 - Psyr_1133 0.34 -4.5 1,284,820 + Psyr_1133 0.39 -0.5 1,284,820 + Psyr_1133 0.39 -1.7 1,284,820 + Psyr_1133 0.39 +3.7 1,284,821 - Psyr_1133 0.39 +3.1 1,284,821 - Psyr_1133 0.39 +2.0 1,284,821 - Psyr_1133 0.39 +0.7 1,284,878 + Psyr_1133 0.41 +2.8 1,284,879 - Psyr_1133 0.41 -0.2 1,284,879 - Psyr_1133 0.41 -0.9 1,285,018 + Psyr_1133 0.47 -1.9 1,285,018 + Psyr_1133 0.47 +1.3 1,285,018 + Psyr_1133 0.47 -2.2 1,285,018 + Psyr_1133 0.47 +2.8 1,285,018 + Psyr_1133 0.47 +1.0 1,285,019 - Psyr_1133 0.47 -3.3 1,285,019 - Psyr_1133 0.47 +0.6 1,285,019 - Psyr_1133 0.47 +0.3 1,285,072 + Psyr_1133 0.49 -1.8 1,285,073 - Psyr_1133 0.49 +2.6 1,285,088 + Psyr_1133 0.50 -0.6 1,285,088 + Psyr_1133 0.50 -0.0 1,285,088 + Psyr_1133 0.50 -1.2 1,285,088 + Psyr_1133 0.50 -1.1 1,285,088 + Psyr_1133 0.50 +1.0 1,285,088 + Psyr_1133 0.50 -0.8 1,285,089 - Psyr_1133 0.50 -0.7 1,285,089 - Psyr_1133 0.50 -0.7 1,285,089 - Psyr_1133 0.50 +3.3 1,285,089 - Psyr_1133 0.50 +1.3 1,285,089 - Psyr_1133 0.50 -1.9 1,285,089 - Psyr_1133 0.50 -0.8 1,285,089 - Psyr_1133 0.50 +2.1 1,285,204 - Psyr_1133 0.54 +0.2 1,285,365 - Psyr_1133 0.61 -0.9 1,285,365 - Psyr_1133 0.61 -2.3 1,285,447 + Psyr_1133 0.64 +2.0 1,285,448 - Psyr_1133 0.64 -3.8 1,285,448 - Psyr_1133 0.64 -0.6 1,285,448 - Psyr_1133 0.64 -0.4 1,285,456 + Psyr_1133 0.64 -0.3 1,285,456 + Psyr_1133 0.64 -1.1 1,285,456 + Psyr_1133 0.64 -1.5 1,285,456 + Psyr_1133 0.64 +0.7 1,285,456 + Psyr_1133 0.64 +0.7 1,285,456 + Psyr_1133 0.64 -0.0 1,285,456 + Psyr_1133 0.64 +0.1 1,285,456 + Psyr_1133 0.64 -0.0 1,285,456 + Psyr_1133 0.64 +0.4 1,285,457 - Psyr_1133 0.64 -2.3 1,285,457 - Psyr_1133 0.64 +3.7 1,285,457 - Psyr_1133 0.64 +0.0 1,285,483 + Psyr_1133 0.65 +4.7 1,285,484 - Psyr_1133 0.65 -0.4 1,285,484 - Psyr_1133 0.65 -1.1 1,285,484 - Psyr_1133 0.65 +0.1 1,285,484 - Psyr_1133 0.65 +1.6 1,285,636 + Psyr_1133 0.71 -1.5 1,285,636 + Psyr_1133 0.71 -3.9 1,285,690 + Psyr_1133 0.73 -3.2 1,285,691 - Psyr_1133 0.73 -1.8 1,285,786 - Psyr_1133 0.77 +1.0 1,285,786 - Psyr_1133 0.77 -0.2 1,285,786 - Psyr_1133 0.77 +0.8 1,285,786 - Psyr_1133 0.77 +0.7 1,285,786 - Psyr_1133 0.77 -0.5 1,285,801 + Psyr_1133 0.78 -1.2 1,285,801 + Psyr_1133 0.78 +0.5 1,285,802 - Psyr_1133 0.78 +2.0 1,285,979 - Psyr_1133 0.85 +2.0 1,286,336 - +2.0 1,286,354 + +3.8 1,286,462 - Psyr_1134 0.13 +0.7 1,286,530 + Psyr_1134 0.22 +3.8 1,286,662 - Psyr_1134 0.38 +0.5 1,286,709 + Psyr_1134 0.44 +1.6 1,286,709 + Psyr_1134 0.44 +2.8 1,286,709 + Psyr_1134 0.44 +2.0 1,286,709 + Psyr_1134 0.44 +3.6 1,286,709 + Psyr_1134 0.44 +3.8 1,286,709 + Psyr_1134 0.44 -2.3 1,286,709 + Psyr_1134 0.44 +4.1 1,286,709 + Psyr_1134 0.44 -0.9 1,286,709 + Psyr_1134 0.44 +3.0 1,286,709 + Psyr_1134 0.44 -1.5 1,286,709 + Psyr_1134 0.44 -0.0 1,286,709 + Psyr_1134 0.44 +3.0 1,286,709 + Psyr_1134 0.44 -0.5 1,286,709 + Psyr_1134 0.44 -0.0 1,286,710 - Psyr_1134 0.44 +0.7 1,286,710 - Psyr_1134 0.44 +0.1 1,286,710 - Psyr_1134 0.44 -1.5 1,286,710 - Psyr_1134 0.44 -1.2 1,286,710 - Psyr_1134 0.44 +3.7 1,286,710 - Psyr_1134 0.44 -1.2 1,286,710 - Psyr_1134 0.44 +1.6 1,286,710 - Psyr_1134 0.44 +2.8 1,286,710 - Psyr_1134 0.44 +3.6 1,286,710 - Psyr_1134 0.44 +1.6 1,286,710 - Psyr_1134 0.44 -1.2 1,286,710 - Psyr_1134 0.44 +4.4 1,286,710 - Psyr_1134 0.44 -2.0 1,286,710 - Psyr_1134 0.44 +2.8 1,286,788 - Psyr_1134 0.54 -1.4 1,287,051 + Psyr_1134 0.88 -2.4 1,287,147 + +3.7 1,287,147 + -0.6 1,287,200 + -0.0 1,287,200 + -1.5 1,287,234 + -0.9 1,287,234 + +3.6 1,287,283 - Psyr_1135 0.14 -1.6
Or see this region's nucleotide sequence