Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1130 and Psyr_1131 are separated by 330 nucleotides Psyr_1131 and Psyr_1132 are separated by 21 nucleotides Psyr_1132 and Psyr_1133 are separated by 131 nucleotides
Psyr_1130: Psyr_1130 - conserved hypothetical protein, at 1,281,587 to 1,281,967
_1130
Psyr_1131: Psyr_1131 - Fimbrial protein, at 1,282,298 to 1,282,882
_1131
Psyr_1132: Psyr_1132 - pili assembly chaperone:Bacterial pili assembly chaperone, at 1,282,904 to 1,283,698
_1132
Psyr_1133: Psyr_1133 - Fimbrial biogenesis outer membrane usher protein, at 1,283,830 to 1,286,364
_1133
Position (kb) 1282
1283
1284 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 1281.959 kb on + strand at 1281.959 kb on + strand at 1281.965 kb on + strand at 1281.965 kb on + strand at 1281.966 kb on - strand at 1281.966 kb on - strand at 1281.970 kb on - strand at 1282.045 kb on + strand at 1282.045 kb on + strand at 1282.045 kb on + strand at 1282.045 kb on + strand at 1282.046 kb on - strand at 1282.046 kb on - strand at 1282.046 kb on - strand at 1282.046 kb on - strand at 1282.050 kb on - strand at 1282.050 kb on - strand at 1282.050 kb on - strand at 1282.145 kb on + strand at 1282.145 kb on + strand at 1282.145 kb on + strand at 1282.146 kb on - strand at 1282.146 kb on - strand at 1282.147 kb on + strand at 1282.147 kb on + strand at 1282.148 kb on - strand at 1282.152 kb on - strand at 1282.228 kb on - strand at 1282.240 kb on - strand at 1282.241 kb on + strand at 1282.276 kb on + strand at 1282.276 kb on + strand at 1282.277 kb on - strand at 1282.315 kb on + strand at 1282.315 kb on + strand at 1282.315 kb on + strand at 1282.315 kb on + strand at 1282.316 kb on - strand at 1282.411 kb on + strand, within Psyr_1131 at 1282.412 kb on - strand, within Psyr_1131 at 1282.586 kb on + strand, within Psyr_1131 at 1282.586 kb on + strand, within Psyr_1131 at 1282.587 kb on - strand, within Psyr_1131 at 1282.587 kb on - strand, within Psyr_1131 at 1282.587 kb on - strand, within Psyr_1131 at 1282.609 kb on + strand, within Psyr_1131 at 1282.609 kb on + strand, within Psyr_1131 at 1282.808 kb on + strand, within Psyr_1131 at 1282.808 kb on + strand, within Psyr_1131 at 1282.808 kb on + strand, within Psyr_1131 at 1282.808 kb on + strand, within Psyr_1131 at 1282.808 kb on + strand, within Psyr_1131 at 1282.808 kb on + strand, within Psyr_1131 at 1282.808 kb on + strand, within Psyr_1131 at 1282.808 kb on + strand, within Psyr_1131 at 1282.808 kb on + strand, within Psyr_1131 at 1282.809 kb on - strand, within Psyr_1131 at 1282.809 kb on - strand, within Psyr_1131 at 1282.809 kb on - strand, within Psyr_1131 at 1282.809 kb on - strand, within Psyr_1131 at 1282.809 kb on - strand, within Psyr_1131 at 1282.809 kb on - strand, within Psyr_1131 at 1282.809 kb on - strand, within Psyr_1131 at 1282.809 kb on - strand, within Psyr_1131 at 1282.816 kb on + strand, within Psyr_1131 at 1282.817 kb on - strand, within Psyr_1131 at 1282.874 kb on + strand at 1282.874 kb on + strand at 1282.874 kb on + strand at 1282.875 kb on - strand at 1282.880 kb on + strand at 1283.022 kb on + strand, within Psyr_1132 at 1283.030 kb on - strand, within Psyr_1132 at 1283.030 kb on - strand, within Psyr_1132 at 1283.030 kb on - strand, within Psyr_1132 at 1283.045 kb on + strand, within Psyr_1132 at 1283.046 kb on - strand, within Psyr_1132 at 1283.224 kb on - strand, within Psyr_1132 at 1283.224 kb on - strand, within Psyr_1132 at 1283.278 kb on - strand, within Psyr_1132 at 1283.337 kb on + strand, within Psyr_1132 at 1283.338 kb on - strand, within Psyr_1132 at 1283.349 kb on + strand, within Psyr_1132 at 1283.349 kb on + strand, within Psyr_1132 at 1283.349 kb on + strand, within Psyr_1132 at 1283.349 kb on + strand, within Psyr_1132 at 1283.349 kb on + strand, within Psyr_1132 at 1283.350 kb on - strand, within Psyr_1132 at 1283.491 kb on - strand, within Psyr_1132 at 1283.781 kb on - strand at 1283.814 kb on + strand at 1283.814 kb on + strand at 1283.851 kb on - strand at 1283.853 kb on + strand at 1283.853 kb on + strand at 1283.853 kb on + strand at 1283.854 kb on - strand at 1283.862 kb on + strand at 1283.863 kb on - strand at 1284.048 kb on + strand at 1284.048 kb on + strand at 1284.048 kb on + strand at 1284.048 kb on + strand at 1284.049 kb on - strand at 1284.053 kb on + strand at 1284.053 kb on + strand at 1284.053 kb on + strand at 1284.053 kb on + strand at 1284.053 kb on + strand at 1284.053 kb on + strand at 1284.053 kb on + strand at 1284.053 kb on + strand at 1284.053 kb on + strand at 1284.053 kb on + strand at 1284.054 kb on - strand at 1284.054 kb on - strand at 1284.054 kb on - strand at 1284.054 kb on - strand at 1284.078 kb on + strand at 1284.078 kb on + strand at 1284.078 kb on + strand at 1284.078 kb on + strand at 1284.082 kb on + strand at 1284.082 kb on + strand at 1284.082 kb on + strand at 1284.082 kb on + strand at 1284.082 kb on + strand at 1284.083 kb on - strand at 1284.083 kb on - strand at 1284.083 kb on - strand at 1284.346 kb on + strand, within Psyr_1133 at 1284.391 kb on - strand, within Psyr_1133 at 1284.397 kb on + strand, within Psyr_1133 at 1284.397 kb on + strand, within Psyr_1133 at 1284.397 kb on + strand, within Psyr_1133 at 1284.397 kb on + strand, within Psyr_1133 at 1284.398 kb on - strand, within Psyr_1133 at 1284.448 kb on + strand, within Psyr_1133 at 1284.448 kb on + strand, within Psyr_1133 at 1284.448 kb on + strand, within Psyr_1133 at 1284.449 kb on - strand, within Psyr_1133 at 1284.449 kb on - strand, within Psyr_1133 at 1284.449 kb on - strand, within Psyr_1133 at 1284.451 kb on + strand, within Psyr_1133 at 1284.451 kb on + strand, within Psyr_1133 at 1284.451 kb on + strand, within Psyr_1133 at 1284.452 kb on - strand, within Psyr_1133 at 1284.452 kb on - strand, within Psyr_1133 at 1284.452 kb on - strand, within Psyr_1133 at 1284.452 kb on - strand, within Psyr_1133 at 1284.452 kb on - strand, within Psyr_1133 at 1284.555 kb on + strand, within Psyr_1133 at 1284.555 kb on + strand, within Psyr_1133 at 1284.556 kb on - strand, within Psyr_1133
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 1,281,959 + -1.5 1,281,959 + -2.2 1,281,965 + +1.9 1,281,965 + +2.3 1,281,966 - -2.8 1,281,966 - +3.0 1,281,970 - -1.9 1,282,045 + -0.8 1,282,045 + -0.5 1,282,045 + +1.0 1,282,045 + +3.9 1,282,046 - -0.2 1,282,046 - -2.6 1,282,046 - +1.6 1,282,046 - -5.0 1,282,050 - -3.6 1,282,050 - -2.7 1,282,050 - -3.2 1,282,145 + +1.6 1,282,145 + -1.2 1,282,145 + -0.0 1,282,146 - -1.6 1,282,146 - -0.0 1,282,147 + -0.0 1,282,147 + +2.6 1,282,148 - +2.3 1,282,152 - -4.8 1,282,228 - +1.6 1,282,240 - -0.0 1,282,241 + +2.6 1,282,276 + -0.3 1,282,276 + +3.0 1,282,277 - -3.5 1,282,315 + +2.6 1,282,315 + +3.4 1,282,315 + -1.9 1,282,315 + +2.0 1,282,316 - -3.4 1,282,411 + Psyr_1131 0.19 +3.2 1,282,412 - Psyr_1131 0.19 -0.0 1,282,586 + Psyr_1131 0.49 +3.7 1,282,586 + Psyr_1131 0.49 -0.0 1,282,587 - Psyr_1131 0.49 -0.5 1,282,587 - Psyr_1131 0.49 -0.3 1,282,587 - Psyr_1131 0.49 +3.2 1,282,609 + Psyr_1131 0.53 -2.2 1,282,609 + Psyr_1131 0.53 +0.7 1,282,808 + Psyr_1131 0.87 -1.8 1,282,808 + Psyr_1131 0.87 +0.6 1,282,808 + Psyr_1131 0.87 +1.6 1,282,808 + Psyr_1131 0.87 +3.0 1,282,808 + Psyr_1131 0.87 +4.0 1,282,808 + Psyr_1131 0.87 +4.9 1,282,808 + Psyr_1131 0.87 +4.8 1,282,808 + Psyr_1131 0.87 +3.0 1,282,808 + Psyr_1131 0.87 +0.1 1,282,809 - Psyr_1131 0.87 -3.0 1,282,809 - Psyr_1131 0.87 -1.3 1,282,809 - Psyr_1131 0.87 -0.4 1,282,809 - Psyr_1131 0.87 -2.1 1,282,809 - Psyr_1131 0.87 -0.9 1,282,809 - Psyr_1131 0.87 -2.7 1,282,809 - Psyr_1131 0.87 -0.4 1,282,809 - Psyr_1131 0.87 -4.8 1,282,816 + Psyr_1131 0.89 -0.9 1,282,817 - Psyr_1131 0.89 -3.9 1,282,874 + -3.6 1,282,874 + +4.2 1,282,874 + +1.6 1,282,875 - -3.2 1,282,880 + -1.9 1,283,022 + Psyr_1132 0.15 -3.5 1,283,030 - Psyr_1132 0.16 -1.4 1,283,030 - Psyr_1132 0.16 +2.6 1,283,030 - Psyr_1132 0.16 +0.3 1,283,045 + Psyr_1132 0.18 -1.6 1,283,046 - Psyr_1132 0.18 +2.3 1,283,224 - Psyr_1132 0.40 -2.7 1,283,224 - Psyr_1132 0.40 -0.0 1,283,278 - Psyr_1132 0.47 +3.1 1,283,337 + Psyr_1132 0.54 -2.8 1,283,338 - Psyr_1132 0.55 -1.6 1,283,349 + Psyr_1132 0.56 -0.0 1,283,349 + Psyr_1132 0.56 -0.2 1,283,349 + Psyr_1132 0.56 -2.3 1,283,349 + Psyr_1132 0.56 +3.4 1,283,349 + Psyr_1132 0.56 +3.3 1,283,350 - Psyr_1132 0.56 -4.3 1,283,491 - Psyr_1132 0.74 -0.0 1,283,781 - -0.1 1,283,814 + -3.1 1,283,814 + +2.6 1,283,851 - -0.0 1,283,853 + +2.3 1,283,853 + -0.0 1,283,853 + +4.1 1,283,854 - +3.3 1,283,862 + -0.3 1,283,863 - -1.8 1,284,048 + +0.8 1,284,048 + +3.0 1,284,048 + -1.4 1,284,048 + -4.2 1,284,049 - -1.0 1,284,053 + -0.0 1,284,053 + -0.8 1,284,053 + +0.5 1,284,053 + -0.8 1,284,053 + -1.0 1,284,053 + -2.1 1,284,053 + -0.3 1,284,053 + +1.0 1,284,053 + -0.7 1,284,053 + -4.3 1,284,054 - +3.9 1,284,054 - -2.0 1,284,054 - -1.3 1,284,054 - -1.1 1,284,078 + -0.0 1,284,078 + +1.0 1,284,078 + -0.9 1,284,078 + -0.7 1,284,082 + +1.6 1,284,082 + -4.2 1,284,082 + -0.8 1,284,082 + -1.8 1,284,082 + -2.3 1,284,083 - -3.7 1,284,083 - +1.0 1,284,083 - -1.7 1,284,346 + Psyr_1133 0.20 +0.2 1,284,391 - Psyr_1133 0.22 -2.5 1,284,397 + Psyr_1133 0.22 -0.0 1,284,397 + Psyr_1133 0.22 +2.0 1,284,397 + Psyr_1133 0.22 -3.3 1,284,397 + Psyr_1133 0.22 +2.3 1,284,398 - Psyr_1133 0.22 -1.0 1,284,448 + Psyr_1133 0.24 -1.2 1,284,448 + Psyr_1133 0.24 -2.5 1,284,448 + Psyr_1133 0.24 -1.7 1,284,449 - Psyr_1133 0.24 +3.4 1,284,449 - Psyr_1133 0.24 -1.6 1,284,449 - Psyr_1133 0.24 +1.7 1,284,451 + Psyr_1133 0.24 +3.0 1,284,451 + Psyr_1133 0.24 +0.6 1,284,451 + Psyr_1133 0.24 +0.4 1,284,452 - Psyr_1133 0.25 -3.5 1,284,452 - Psyr_1133 0.25 +2.8 1,284,452 - Psyr_1133 0.25 -2.4 1,284,452 - Psyr_1133 0.25 -1.5 1,284,452 - Psyr_1133 0.25 -0.0 1,284,555 + Psyr_1133 0.29 +1.0 1,284,555 + Psyr_1133 0.29 -0.9 1,284,556 - Psyr_1133 0.29 -0.0
Or see this region's nucleotide sequence