Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1127

Experiment: KB with Mitomycin C 0.625 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1126 and Psyr_1127 overlap by 11 nucleotidesPsyr_1127 and Psyr_1128 are separated by 10 nucleotides Psyr_1126: Psyr_1126 - Heavy metal sensor kinase, at 1,274,985 to 1,276,349 _1126 Psyr_1127: Psyr_1127 - Heavy metal response regulator, at 1,276,339 to 1,277,016 _1127 Psyr_1128: Psyr_1128 - Acriflavin resistance protein, at 1,277,027 to 1,280,131 _1128 Position (kb) 1276 1277 1278Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1275.382 kb on + strand, within Psyr_1126at 1275.395 kb on + strand, within Psyr_1126at 1275.535 kb on + strand, within Psyr_1126at 1275.535 kb on + strand, within Psyr_1126at 1275.535 kb on + strand, within Psyr_1126at 1275.536 kb on - strand, within Psyr_1126at 1276.072 kb on + strand, within Psyr_1126at 1276.261 kb on + strandat 1276.261 kb on + strandat 1276.261 kb on + strandat 1276.261 kb on + strandat 1276.262 kb on - strandat 1276.262 kb on - strandat 1276.262 kb on - strandat 1276.262 kb on - strandat 1276.326 kb on + strandat 1276.326 kb on + strandat 1276.367 kb on + strandat 1276.367 kb on + strandat 1276.368 kb on - strandat 1276.461 kb on + strand, within Psyr_1127at 1276.618 kb on + strand, within Psyr_1127at 1276.727 kb on + strand, within Psyr_1127at 1276.727 kb on + strand, within Psyr_1127at 1276.944 kb on - strand, within Psyr_1127at 1276.944 kb on - strand, within Psyr_1127at 1276.973 kb on + strandat 1276.974 kb on - strandat 1277.100 kb on + strandat 1277.100 kb on + strandat 1277.100 kb on + strandat 1277.100 kb on + strandat 1277.101 kb on - strandat 1277.101 kb on - strandat 1277.101 kb on - strandat 1277.101 kb on - strandat 1277.283 kb on + strandat 1277.283 kb on + strandat 1277.283 kb on + strandat 1277.283 kb on + strandat 1277.283 kb on + strandat 1277.283 kb on + strandat 1277.283 kb on + strandat 1277.283 kb on + strandat 1277.283 kb on + strandat 1277.284 kb on - strandat 1277.284 kb on - strandat 1277.502 kb on + strand, within Psyr_1128at 1277.502 kb on + strand, within Psyr_1128at 1277.502 kb on + strand, within Psyr_1128at 1277.503 kb on - strand, within Psyr_1128at 1277.522 kb on - strand, within Psyr_1128at 1277.522 kb on - strand, within Psyr_1128at 1277.522 kb on - strand, within Psyr_1128at 1277.523 kb on + strand, within Psyr_1128at 1277.523 kb on + strand, within Psyr_1128at 1277.523 kb on + strand, within Psyr_1128at 1277.523 kb on + strand, within Psyr_1128at 1277.523 kb on + strand, within Psyr_1128at 1277.523 kb on + strand, within Psyr_1128at 1277.523 kb on + strand, within Psyr_1128at 1277.523 kb on + strand, within Psyr_1128at 1277.523 kb on + strand, within Psyr_1128at 1277.523 kb on + strand, within Psyr_1128at 1277.523 kb on + strand, within Psyr_1128at 1277.523 kb on + strand, within Psyr_1128at 1277.524 kb on - strand, within Psyr_1128at 1277.524 kb on - strand, within Psyr_1128at 1277.524 kb on - strand, within Psyr_1128at 1277.524 kb on - strand, within Psyr_1128at 1277.524 kb on - strand, within Psyr_1128at 1277.524 kb on - strand, within Psyr_1128at 1277.524 kb on - strand, within Psyr_1128at 1277.524 kb on - strand, within Psyr_1128at 1277.524 kb on - strand, within Psyr_1128at 1277.524 kb on - strand, within Psyr_1128at 1277.524 kb on - strand, within Psyr_1128at 1277.524 kb on - strand, within Psyr_1128at 1277.544 kb on - strand, within Psyr_1128at 1277.820 kb on + strand, within Psyr_1128at 1277.820 kb on + strand, within Psyr_1128at 1277.820 kb on + strand, within Psyr_1128at 1277.821 kb on - strand, within Psyr_1128at 1277.826 kb on + strand, within Psyr_1128at 1277.826 kb on + strand, within Psyr_1128at 1277.826 kb on + strand, within Psyr_1128at 1277.827 kb on - strand, within Psyr_1128at 1277.827 kb on - strand, within Psyr_1128at 1277.827 kb on - strand, within Psyr_1128at 1277.883 kb on + strand, within Psyr_1128at 1277.884 kb on - strand, within Psyr_1128at 1277.904 kb on + strand, within Psyr_1128at 1277.937 kb on + strand, within Psyr_1128at 1277.937 kb on + strand, within Psyr_1128at 1277.938 kb on - strand, within Psyr_1128

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
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1,275,382 + Psyr_1126 0.29 -0.9
1,275,395 + Psyr_1126 0.30 -0.0
1,275,535 + Psyr_1126 0.40 -0.2
1,275,535 + Psyr_1126 0.40 +1.0
1,275,535 + Psyr_1126 0.40 +0.1
1,275,536 - Psyr_1126 0.40 +1.6
1,276,072 + Psyr_1126 0.80 -1.5
1,276,261 + -0.9
1,276,261 + -4.5
1,276,261 + +3.0
1,276,261 + -2.0
1,276,262 - -3.9
1,276,262 - -2.1
1,276,262 - -0.9
1,276,262 - +0.4
1,276,326 + -0.6
1,276,326 + +1.6
1,276,367 + -0.0
1,276,367 + -0.0
1,276,368 - +3.7
1,276,461 + Psyr_1127 0.18 +1.4
1,276,618 + Psyr_1127 0.41 +0.1
1,276,727 + Psyr_1127 0.57 +1.8
1,276,727 + Psyr_1127 0.57 +4.2
1,276,944 - Psyr_1127 0.89 -3.0
1,276,944 - Psyr_1127 0.89 +2.0
1,276,973 + -0.5
1,276,974 - -0.0
1,277,100 + -1.2
1,277,100 + -0.9
1,277,100 + -0.8
1,277,100 + -2.0
1,277,101 - +3.9
1,277,101 - +0.2
1,277,101 - +2.8
1,277,101 - +0.5
1,277,283 + +4.3
1,277,283 + -1.5
1,277,283 + -1.2
1,277,283 + -0.8
1,277,283 + -0.8
1,277,283 + +2.0
1,277,283 + -1.8
1,277,283 + -1.9
1,277,283 + -1.7
1,277,284 - -2.7
1,277,284 - +2.0
1,277,502 + Psyr_1128 0.15 -2.5
1,277,502 + Psyr_1128 0.15 +3.8
1,277,502 + Psyr_1128 0.15 -3.1
1,277,503 - Psyr_1128 0.15 -0.0
1,277,522 - Psyr_1128 0.16 -2.3
1,277,522 - Psyr_1128 0.16 +3.2
1,277,522 - Psyr_1128 0.16 +3.2
1,277,523 + Psyr_1128 0.16 -0.6
1,277,523 + Psyr_1128 0.16 +3.3
1,277,523 + Psyr_1128 0.16 +0.5
1,277,523 + Psyr_1128 0.16 -1.4
1,277,523 + Psyr_1128 0.16 +1.7
1,277,523 + Psyr_1128 0.16 -1.1
1,277,523 + Psyr_1128 0.16 -0.0
1,277,523 + Psyr_1128 0.16 +1.0
1,277,523 + Psyr_1128 0.16 -1.8
1,277,523 + Psyr_1128 0.16 -0.4
1,277,523 + Psyr_1128 0.16 +3.8
1,277,523 + Psyr_1128 0.16 -3.7
1,277,524 - Psyr_1128 0.16 +2.8
1,277,524 - Psyr_1128 0.16 -2.4
1,277,524 - Psyr_1128 0.16 +0.9
1,277,524 - Psyr_1128 0.16 -0.1
1,277,524 - Psyr_1128 0.16 -1.6
1,277,524 - Psyr_1128 0.16 -0.2
1,277,524 - Psyr_1128 0.16 +1.6
1,277,524 - Psyr_1128 0.16 -2.1
1,277,524 - Psyr_1128 0.16 +1.6
1,277,524 - Psyr_1128 0.16 -3.3
1,277,524 - Psyr_1128 0.16 -0.0
1,277,524 - Psyr_1128 0.16 -1.2
1,277,544 - Psyr_1128 0.17 -0.6
1,277,820 + Psyr_1128 0.26 -1.4
1,277,820 + Psyr_1128 0.26 -1.9
1,277,820 + Psyr_1128 0.26 -1.6
1,277,821 - Psyr_1128 0.26 -1.8
1,277,826 + Psyr_1128 0.26 -4.1
1,277,826 + Psyr_1128 0.26 -2.5
1,277,826 + Psyr_1128 0.26 -3.2
1,277,827 - Psyr_1128 0.26 -0.6
1,277,827 - Psyr_1128 0.26 +1.0
1,277,827 - Psyr_1128 0.26 -1.6
1,277,883 + Psyr_1128 0.28 -3.0
1,277,884 - Psyr_1128 0.28 -1.6
1,277,904 + Psyr_1128 0.28 +3.3
1,277,937 + Psyr_1128 0.29 +2.6
1,277,937 + Psyr_1128 0.29 +1.0
1,277,938 - Psyr_1128 0.29 -1.6

Or see this region's nucleotide sequence